Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G3563 Papaver somniferum HOM05D006152 ORTHO05D008137 1.6e-184 649.4 359 100.0
PSO384G4708 Papaver somniferum HOM05D006152 ORTHO05D008137 3.0e-183 645.2 359 98.6
PSO339G6042 Papaver somniferum HOM05D006152 ORTHO05D008137 1.3e-149 533.5 278 94.6
Actinidia38346 Actinidia chinensis HOM05D006152 ORTHO05D008137 1.4e-116 423.7 316 65.8
Thecc.09G035000 Theobroma cacao HOM05D006152 ORTHO05D008137 1.4e-116 423.7 326 66.0
Nn2g12295 Nelumbo nucifera HOM05D006152 ORTHO05D008137 5.3e-116 421.8 331 66.8
TWI32G1323 Tripterygium wilfordii HOM05D006152 ORTHO05D008137 5.3e-116 421.8 322 65.8
Aqoxy1G03917 Aquilegia oxysepala HOM05D006152 ORTHO05D008137 2.2e-114 416.4 315 65.1
Ciclev10008799m.g Citrus clementina HOM05D006152 ORTHO05D008137 1.1e-113 414.1 315 67.3
CSS0018805 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 1.9e-113 413.3 298 68.1
Gohir.D05G052200 Gossypium hirsutum HOM05D006152 ORTHO05D008137 1.9e-113 413.3 324 64.2
CiPaw.16G115700 Carya illinoinensis HOM05D006152 ORTHO05D008137 2.1e-112 409.8 316 67.1
MD02G1011000 Malus domestica HOM05D006152 ORTHO05D008137 8.0e-112 407.9 320 65.9
Prupe.7G259100 Prunus persica HOM05D006152 ORTHO05D008137 8.0e-112 407.9 324 66.0
Gorai.009G054000 Gossypium raimondii HOM05D006152 ORTHO05D008137 1.4e-111 407.1 335 62.4
Manes.06G038100 Manihot esculenta HOM05D006152 ORTHO05D008137 2.3e-111 406.4 324 63.0
FvH4_1g01320 Fragaria vesca HOM05D006152 ORTHO05D008137 5.2e-111 405.2 317 63.7
RcHm_v2.0_Chr2g0086151 Rosa chinensis HOM05D006152 ORTHO05D008137 2.0e-110 403.3 322 63.7
HanXRQChr10g0314551 Helianthus annuus HOM05D006152 ORTHO05D008137 9.8e-110 401.0 328 63.4
CSS0025720 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 2.2e-109 399.8 313 64.2
MSTRG.26302 Avicennia marina HOM05D006152 ORTHO05D008137 1.1e-108 397.5 318 62.3
Oeu043492.1 Olea europaea HOM05D006152 ORTHO05D008137 3.1e-108 396.0 323 61.6
Sopen07g001260 Solanum pennellii HOM05D006152 ORTHO05D008137 7.0e-108 394.8 320 60.0
Solyc07g005120.3 Solanum lycopersicum HOM05D006152 ORTHO05D008137 9.1e-108 394.4 319 60.2
Lj7A453G70 Lonicera japonica HOM05D006152 ORTHO05D008137 1.0e-106 391.0 299 62.9
QL02p092448 Quercus lobata HOM05D006152 ORTHO05D008137 1.0e-106 391.0 280 68.2
Rhsim01G0042700 Rhododendron simsii HOM05D006152 ORTHO05D008137 2.3e-106 389.8 286 67.5
DCAR_019366 Daucus carota HOM05D006152 ORTHO05D008137 5.0e-106 388.7 321 61.7
Gohir.A05G050600 Gossypium hirsutum HOM05D006152 ORTHO05D008137 6.6e-106 388.3 284 66.9
Eucgr.C00382 Eucalyptus grandis HOM05D006152 ORTHO05D008137 9.5e-105 384.4 313 62.3
Migut.K00351 Erythranthe guttata HOM05D006152 ORTHO05D008137 1.2e-104 384.0 318 60.7
Glyma.13G155700 Glycine max HOM05D006152 ORTHO05D008137 4.7e-104 382.1 321 61.7
Cc06_g15390 Coffea canephora HOM05D006152 ORTHO05D008137 1.0e-103 380.9 334 58.1
CsaV3_2G003440 Cucumis sativus L. HOM05D006152 ORTHO05D008137 1.0e-103 380.9 325 58.2
Lalb_Chr12g0198561 Lupinus albus HOM05D006152 ORTHO05D008137 1.8e-103 380.2 322 59.9
TPR.G37046 Trifolium pratense HOM05D006152 ORTHO05D008137 2.3e-103 379.8 317 60.3
TPR.G6509 Trifolium pratense HOM05D006152 ORTHO05D008137 5.2e-103 378.6 320 59.7
Lsat_1_v5_gn_5_90820 Lactuca sativa HOM05D006152 ORTHO05D008137 1.5e-102 377.1 324 62.3
Hund21620 Selenicereus undatus HOM05D006152 ORTHO05D008137 2.6e-102 376.3 322 59.9
MD15G1156000 Malus domestica HOM05D006152 ORTHO05D008137 3.4e-102 375.9 281 67.3
Sc14g0000030 Simmondsia chinensis HOM05D006152 ORTHO05D008137 3.4e-102 375.9 284 63.4
Haze_19246 Corylus avellana HOM05D006152 ORTHO05D008137 1.7e-101 373.6 303 63.7
Lj4g0021784 Lotus japonicus HOM05D006152 ORTHO05D008137 2.8e-101 372.9 319 59.9
Phvul.003G158400 Phaseolus vulgaris HOM05D006152 ORTHO05D008137 1.4e-100 370.5 320 60.0
ATR0184G013 Amborella trichopoda HOM05D006152 ORTHO05D008137 4.1e-100 369.0 278 63.3
Thhalv10014084m.g Eutrema salsugineum HOM05D006152 ORTHO05D008137 4.1e-100 369.0 319 58.9
Sabra06G0143900 Salix brachista HOM05D006152 ORTHO05D008137 1.6e-99 367.1 327 59.3
Sabra06G0145100 Salix brachista HOM05D006152 ORTHO05D008137 1.6e-99 367.1 327 59.3
Carub.0008s1874 Capsella rubella HOM05D006152 ORTHO05D008137 2.0e-99 366.7 318 59.4
Sp6g19860 Schrenkiella parvula HOM05D006152 ORTHO05D008137 2.7e-99 366.3 318 56.9
Medtr4g131670 Medicago truncatula HOM05D006152 ORTHO05D008137 4.5e-99 365.5 323 59.4
Peaxi162Scf00347g00517 Petunia axillaris HOM05D006152 ORTHO05D008137 1.3e-98 364.0 295 60.0
FAN23G2003 Fragaria x ananassa HOM05D006152 ORTHO05D008137 1.7e-98 363.6 327 57.2
Sed0008154 Sechium edule HOM05D006152 ORTHO05D008137 1.7e-98 363.6 322 57.8
A02p07870 Brassica napus HOM05D006152 ORTHO05D008137 5.0e-98 362.1 318 57.2
Rhsim01G0046600 Rhododendron simsii HOM05D006152 ORTHO05D008137 6.6e-98 361.7 296 62.2
Os06g0182400 Oryza sativa ssp. japonica HOM05D006152 ORTHO05D008137 1.1e-97 360.9 311 58.5
arahy.Tifrunner.gnm1.ann1.QAR9AW Arachis hypogaea HOM05D006152 ORTHO05D008137 3.3e-97 359.4 322 57.8
CARHR272000 Cardamine hirsuta HOM05D006152 ORTHO05D008137 7.3e-97 358.2 286 62.2
C02p13510 Brassica napus HOM05D006152 ORTHO05D008137 9.5e-97 357.8 318 57.2
Hma1.2p1_0222F.1_g093200 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 9.5e-97 357.8 258 67.8
AT5G58200 Arabidopsis thaliana HOM05D006152 ORTHO05D008137 1.6e-96 357.1 321 57.6
THA.LOC104811841 Tarenaya hassleriana HOM05D006152 ORTHO05D008137 2.1e-96 356.7 320 57.8
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 4.7e-96 355.5 319 57.1
PGR142G2956 Punica granatum HOM05D006152 ORTHO05D008137 1.4e-95 354.0 330 54.5
BcaB05g22408 Brassica carinata HOM05D006152 ORTHO05D008137 1.8e-95 353.6 321 56.1
AL8G34300 Arabidopsis lyrata HOM05D006152 ORTHO05D008137 6.8e-95 351.7 319 57.1
arahy.Tifrunner.gnm1.ann1.L77CZK Arachis hypogaea HOM05D006152 ORTHO05D008137 6.8e-95 351.7 282 62.1
BraA02t05860Z Brassica rapa HOM05D006152 ORTHO05D008137 8.9e-95 351.3 332 54.8
Nitab4.5_0003856g0050 Nicotiana tabacum HOM05D006152 ORTHO05D008137 2.6e-94 349.7 303 56.1
SGA_v2.0_scaffold387G50519 Striga asiatica HOM05D006152 ORTHO05D008137 2.2e-93 346.7 385 50.1
BolC2t07463H Brassica oleracea HOM05D006152 ORTHO05D008137 3.7e-93 345.9 329 55.0
vmacro13046 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 3.7e-93 345.9 309 57.9
vmacro23231 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 3.7e-93 345.9 309 57.9
BcaC03g14112 Brassica carinata HOM05D006152 ORTHO05D008137 6.4e-93 345.1 329 54.4
ECA234G4022 Erigeron canadensis HOM05D000464 ORTHO05D000408 6.4e-93 345.1 271 63.5
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 2.0e-91 340.1 277 59.6
SEGI_04227 Sequoiadendron giganteum HOM05D006152 ORTHO05D008137 4.6e-91 339.0 319 56.4
Duzib168G0440 Durio zibethinus HOM05D006152 ORTHO05D008137 2.1e-88 330.1 326 56.1
SalBow5G3728 Salvia bowleyana HOM05D001472 ORTHO05D002655 2.1e-88 330.1 295 58.0
AUR62010759 Chenopodium quinoa HOM05D001472 ORTHO05D002655 4.0e-87 325.9 319 54.5
Hma1.2p1_0222F.1_g093210 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 6.8e-87 325.1 242 66.5
AUR62041375 Chenopodium quinoa HOM05D001472 ORTHO05D002655 6.4e-85 318.5 296 56.1
Cpa.g.sc46.115 Carica papaya HOM05D006152 ORTHO05D008137 5.4e-84 315.5 307 55.4
AUR62019760 Chenopodium quinoa HOM05D001472 ORTHO05D002655 2.7e-83 313.2 278 57.6
MBI15_g30906_MAGBIO Magnolia biondii HOM05D006152 ORTHO05D008137 3.9e-82 309.3 237 64.6
QL02p092408 Quercus lobata HOM05D006152 ORTHO05D008137 1.5e-81 307.4 229 66.8
COL.COLO4_18762 Corchorus olitorius HOM05D006152 ORTHO05D008137 9.5e-81 304.7 235 63.4
Nitab4.5_0001094g0060 Nicotiana tabacum HOM05D006152 ORTHO05D008137 1.4e-79 300.8 313 50.2
MELO3C004453.2 Cucumis melo HOM05D006152 ORTHO05D008137 6.8e-79 298.5 244 59.0
TAR383G0013 Trochodendron aralioides HOM05D006152 ORTHO05D008137 6.4e-77 292.0 191 73.3
VMungo1215G1041 Vigna mungo HOM05D006152 ORTHO05D008137 6.4e-77 292.0 241 61.4
Ah.04g162170 Amaranthus hybridus HOM05D006152 ORTHO05D008137 1.1e-76 291.2 314 50.3
CAN.G520.14 Capsicum annuum HOM05D006152 ORTHO05D008137 4.1e-76 289.3 238 59.7
CDE05G0292 Ceratophyllum demersum HOM05D006152 ORTHO05D008137 1.5e-73 280.8 234 59.8
AUR62017200 Chenopodium quinoa HOM05D006152 ORTHO05D008137 1.5e-73 280.8 244 57.0
EL10Ac8g18846 Beta vulgaris HOM05D006152 ORTHO05D008137 3.3e-73 279.6 304 50.3
PGSC0003DMG400003198 Solanum tuberosum HOM05D006152 ORTHO05D008137 4.3e-73 279.3 224 60.3
Dinv42894 Davidia involucrata HOM05D006152 ORTHO05D008137 5.6e-73 278.9 204 64.2
Psat4g007440 Pisum sativum HOM05D006152 ORTHO05D008137 2.1e-72 276.9 227 62.6
Pp3c26_6540 Physcomitrium patens HOM05D006152 ORTHO05D008137 2.8e-72 276.6 324 46.9
Mapoly0124s0018 Marchantia polymorpha HOM05D006152 ORTHO05D008137 6.8e-71 271.9 331 45.6
AagrBONN_evm.TU.Sc2ySwM_228.5740 Anthoceros agrestis HOM05D006152 ORTHO05D008137 4.4e-70 269.2 322 47.2
SMO347G0290 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 3.8e-69 266.2 287 49.1
MD00G1188400 Malus domestica HOM05D006152 ORTHO05D008137 1.2e-62 244.6 150 74.7
SMO356G0422 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 7.6e-62 241.9 314 42.4
GSVIVG01001075001 Vitis vinifera HOM05D006152 ORTHO05D008137 1.9e-60 237.3 327 46.2
CARHR032820 Cardamine hirsuta HOM05D006152 ORTHO05D008137 4.2e-60 236.1 318 45.9
Potri.006G188200 Populus trichocarpa HOM05D006152 ORTHO05D008137 7.1e-60 235.3 184 66.3
SMO169G0164 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.3e-58 231.1 332 38.6
AUR62002687 Chenopodium quinoa HOM05D006152 ORTHO05D008137 4.8e-56 222.6 262 47.7
Migut.K01256 Erythranthe guttata HOM05D006152 ORTHO05D008137 9.9e-54 214.9 159 64.2
HPP92_017513 Vanilla planifolia HOM05D006152 ORTHO05D008137 1.1e-52 211.5 175 59.4
ClCG11G003570 Citrullus lanatus HOM05D006152 ORTHO05D008137 1.6e-51 207.6 187 56.1
Cre17.g729650 Chlamydomonas reinhardtii HOM05D006152 ORTHO05D008137 2.8e-48 196.8 279 41.6
Ca_21103_v3 Cicer arietinum L. HOM05D006152 ORTHO05D008137 2.0e-46 190.7 226 49.6
Dinv43207 Davidia involucrata HOM05D006152 ORTHO05D008137 1.2e-43 181.4 137 64.2
FAN28G1911 Fragaria x ananassa HOM05D006152 ORTHO05D008137 1.9e-41 174.1 144 61.1
Zm00001eb374780 Zea mays HOM05D006152 ORTHO05D008137 2.0e-38 164.1 128 62.5
FvH4_1g01380 Fragaria vesca HOM05D006152 ORTHO05D008137 7.6e-38 162.2 100 73.0
AUR62038836 Chenopodium quinoa HOM05D001472 ORTHO05D008137 3.2e-36 156.8 156 52.6
Oeu028814.1 Olea europaea HOM05D006152 ORTHO05D008137 3.8e-29 133.3 180 43.3
TAR383G0486 Trochodendron aralioides HOM05D006152 ORTHO05D008137 4.3e-25 119.8 106 65.1
GSVIVG01003719001 Vitis vinifera HOM05D006152 ORTHO05D008137 1.9e-20 104.4 85 63.5
PGR142G1207 Punica granatum HOM05D006152 ORTHO05D008137 1.2e-19 101.7 94 56.4
Potri.018G111500 Populus trichocarpa HOM05D006152 ORTHO05D008137 1.8e-15 87.8 91 49.5
Sc04g0006660 Simmondsia chinensis HOM05D006152 ORTHO05D008137 1.8e-15 87.8 80 53.8
FvH4_1g01360 Fragaria vesca HOM05D006152 ORTHO05D045810 3.8e-13 80.1 74 55.4
SMO356G0211 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.2e-11 75.1 68 48.5
Sc08g0005240 Simmondsia chinensis HOM05D006152 ORTHO05D008137 2.7e-11 73.9 103 43.7


User provided reference genes

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