Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G3506 Papaver somniferum HOM05D005177 ORTHO05D006175 1.9e-192 675.6 334 100.0
PSO339G4079 Papaver somniferum HOM05D005177 ORTHO05D006175 4.4e-181 637.9 334 95.2
TAR636G0661 Trochodendron aralioides HOM05D005177 ORTHO05D006175 3.4e-88 329.3 285 55.4
Dinv32787 Davidia involucrata HOM05D005177 ORTHO05D006175 5.9e-85 318.5 275 55.6
Nn2g10682 Nelumbo nucifera HOM05D005177 ORTHO05D006175 1.3e-84 317.4 280 53.6
Thecc.09G260100 Theobroma cacao HOM05D005177 ORTHO05D006175 2.3e-84 316.6 274 56.6
QL01p037260 Quercus lobata HOM05D005177 ORTHO05D006175 9.5e-83 311.2 274 55.1
Prupe.6G094900 Prunus persica HOM05D005177 ORTHO05D006175 2.8e-82 309.7 279 53.8
Gohir.D02G184700 Gossypium hirsutum HOM05D005177 ORTHO05D006175 4.7e-82 308.9 274 56.2
Gorai.005G207000 Gossypium raimondii HOM05D005177 ORTHO05D006175 4.7e-82 308.9 274 56.2
Lalb_Chr01g0004161 Lupinus albus HOM05D005177 ORTHO05D006175 5.2e-81 305.4 272 54.0
Cc01_g11530 Coffea canephora HOM05D005177 ORTHO05D006175 9.8e-80 301.2 276 52.9
CANSAT54G2759 Cannabis sativa HOM05D005177 ORTHO05D006175 3.7e-79 299.3 274 55.1
Aqoxy4G03211 Aquilegia oxysepala HOM05D005177 ORTHO05D006175 8.3e-79 298.1 275 52.0
Migut.D02184 Erythranthe guttata HOM05D005177 ORTHO05D006175 3.2e-78 296.2 274 53.3
MD03G1105200 Malus domestica HOM05D005177 ORTHO05D006175 4.1e-78 295.8 267 53.2
TWI31G0237 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 5.4e-78 295.4 276 52.9
Rhsim01G0220100 Rhododendron simsii HOM05D005177 ORTHO05D006175 7.0e-78 295.0 279 52.3
TWI79G0119 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 7.0e-78 295.0 276 53.3
COL.COLO4_25245 Corchorus olitorius HOM05D005177 ORTHO05D006175 9.2e-78 294.7 276 54.0
PGR102G1116 Punica granatum HOM05D005177 ORTHO05D006175 1.2e-77 294.3 271 52.8
Sc06g0010530 Simmondsia chinensis HOM05D005177 ORTHO05D006175 2.0e-77 293.5 298 50.3
vmacro14462 Vaccinium macrocarpon HOM05D005177 ORTHO05D006175 2.0e-77 293.5 277 53.8
Duzib168G0988 Durio zibethinus HOM05D005177 ORTHO05D006175 7.8e-77 291.6 281 52.0
Ah.01g015010 Amaranthus hybridus HOM05D005177 ORTHO05D006175 1.0e-76 291.2 302 48.0
Phvul.011G072700 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 1.3e-76 290.8 273 50.2
PSO339G4756 Papaver somniferum HOM05D005177 ORTHO05D006175 1.7e-76 290.4 273 53.1
GSVIVG01025137001 Vitis vinifera HOM05D005177 ORTHO05D006175 3.9e-76 289.3 273 53.5
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 5.0e-76 288.9 289 51.9
Glyma.11G153378 Glycine max HOM05D005177 ORTHO05D006175 1.9e-75 287.0 277 49.5
Manes.11G141500 Manihot esculenta HOM05D005177 ORTHO05D006175 1.9e-75 287.0 276 52.9
MSTRG.18639 Avicennia marina HOM05D005177 ORTHO05D006175 2.5e-75 286.6 277 51.6
Cfa011363 Carpinus fangiana HOM05D005177 ORTHO05D006175 7.3e-75 285.0 274 51.5
PGSC0003DMG400027405 Solanum tuberosum HOM05D005177 ORTHO05D006175 7.3e-75 285.0 305 48.9
Ciclev10028554m.g Citrus clementina HOM05D005177 ORTHO05D006175 9.5e-75 284.6 276 51.8
Atru.chr3.3689 Acer truncatum HOM05D005177 ORTHO05D006175 2.1e-74 283.5 281 51.2
Sopen11g030050 Solanum pennellii HOM05D005177 ORTHO05D006175 2.1e-74 283.5 305 48.5
Duzib170G1166 Durio zibethinus HOM05D005177 ORTHO05D006175 3.6e-74 282.7 301 49.2
Hund08273 Selenicereus undatus HOM05D005177 ORTHO05D006175 3.6e-74 282.7 301 49.8
Solyc11g072400.3 Solanum lycopersicum HOM05D005177 ORTHO05D006175 3.6e-74 282.7 307 48.9
Lj3g0023073 Lotus japonicus HOM05D005177 ORTHO05D006175 6.2e-74 282.0 275 49.5
Os05g0123300 Oryza sativa ssp. japonica HOM05D005177 ORTHO05D006175 6.2e-74 282.0 277 50.2
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 8.0e-74 281.6 275 52.4
Nitab4.5_0002129g0070 Nicotiana tabacum HOM05D005177 ORTHO05D006175 8.0e-74 281.6 274 51.5
CiPaw.13G107600 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.0e-73 281.2 251 53.4
RcHm_v2.0_Chr5g0060611 Rosa chinensis HOM05D005177 ORTHO05D006175 1.4e-73 280.8 276 51.1
VMungo1127G2232 Vigna mungo HOM05D005177 ORTHO05D006175 1.4e-73 280.8 273 49.1
Psat0s137g0200 Pisum sativum HOM05D005177 ORTHO05D006175 2.3e-73 280.0 280 48.9
TPR.G14917 Trifolium pratense HOM05D005177 ORTHO05D006175 2.3e-73 280.0 275 50.2
DCAR_006046 Daucus carota HOM05D005177 ORTHO05D006175 3.1e-73 279.6 303 46.2
PSO063G2407 Papaver somniferum HOM05D005177 ORTHO05D006175 4.0e-73 279.3 297 48.8
CAN.G553.3 Capsicum annuum HOM05D005177 ORTHO05D006175 1.5e-72 277.3 274 50.4
ATR1159G017 Amborella trichopoda HOM05D005177 ORTHO05D006175 2.0e-72 276.9 276 50.7
Oeu005908.1 Olea europaea HOM05D005177 ORTHO05D006175 2.0e-72 276.9 275 50.9
Zm00001eb265420 Zea mays HOM05D005177 ORTHO05D006175 5.8e-72 275.4 274 48.5
AUR62006522 Chenopodium quinoa HOM05D005177 ORTHO05D006175 7.5e-72 275.0 256 54.7
Medtr4g060790 Medicago truncatula HOM05D005177 ORTHO05D006175 4.9e-71 272.3 280 47.9
EL10Ac9g22467 Beta vulgaris HOM05D005177 ORTHO05D006175 8.3e-71 271.6 300 48.0
CiPaw.13G107200 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.1e-70 271.2 306 47.7
Haze_23912 Corylus avellana HOM05D005177 ORTHO05D006175 3.2e-70 269.6 275 51.6
unitig_899.g14907 Utricularia gibba HOM05D005177 ORTHO05D006175 3.2e-70 269.6 275 48.4
Haze_23911 Corylus avellana HOM05D005177 ORTHO05D006175 7.0e-70 268.5 275 51.6
Eucgr.B02471 Eucalyptus grandis HOM05D005177 ORTHO05D006175 9.2e-70 268.1 273 47.6
Lsat_1_v5_gn_2_50980 Lactuca sativa HOM05D005177 ORTHO05D006175 2.0e-69 266.9 279 50.5
arahy.Tifrunner.gnm1.ann1.Q9R44R Arachis hypogaea HOM05D005177 ORTHO05D006175 7.8e-69 265.0 277 48.4
arahy.Tifrunner.gnm1.ann1.X56S8K Arachis hypogaea HOM05D005177 ORTHO05D006175 1.7e-68 263.8 277 48.0
CiPaw.13G107400 Carya illinoinensis HOM05D005177 ORTHO05D006175 5.6e-67 258.8 251 52.6
Cpa.g.sc139.70 Carica papaya HOM05D005177 ORTHO05D006175 1.2e-66 257.7 273 46.9
ECA238G1817 Erigeron canadensis HOM05D000382 ORTHO05D000391 4.7e-66 255.8 279 49.5
Peaxi162Scf00389g00939 Petunia axillaris HOM05D005177 ORTHO05D006175 1.1e-65 254.6 274 48.9
FvH4_3g33260 Fragaria vesca HOM05D005177 ORTHO05D006175 1.8e-65 253.8 274 47.1
CSS0008980 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D006175 5.2e-65 252.3 231 53.2
MELO3C025749.2 Cucumis melo HOM05D005177 ORTHO05D006175 6.8e-65 251.9 275 46.9
Dinv01415 Davidia involucrata HOM05D005177 ORTHO05D006175 6.8e-65 251.9 223 57.8
ClCG02G020960 Citrullus lanatus HOM05D005177 ORTHO05D006175 8.9e-65 251.5 282 45.7
CsaV3_6G021650 Cucumis sativus L. HOM05D005177 ORTHO05D006175 4.4e-64 249.2 274 45.3
CDE04G2914 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 7.5e-64 248.4 237 51.9
RcHm_v2.0_Chr5g0060621 Rosa chinensis HOM05D005177 ORTHO05D006175 1.3e-63 247.7 275 48.7
Dinv14445 Davidia involucrata HOM05D005177 ORTHO05D006175 2.2e-63 246.9 214 58.4
QL01p037240 Quercus lobata HOM05D005177 ORTHO05D006175 2.9e-63 246.5 274 48.5
Aa31LG1G12430 Aethionema arabicum HOM05D005177 ORTHO05D006175 3.7e-63 246.1 275 45.8
THA.LOC104814837 Tarenaya hassleriana HOM05D005177 ORTHO05D006175 8.3e-63 245.0 274 45.6
Lj3g0021588 Lotus japonicus HOM05D005177 ORTHO05D006175 1.1e-62 244.6 275 43.6
Nitab4.5_0001802g0050 Nicotiana tabacum HOM05D005177 ORTHO05D006175 4.1e-62 242.7 282 47.2
Carub.0008s2107 Capsella rubella HOM05D005177 ORTHO05D006175 9.2e-62 241.5 311 42.1
Pp3c24_6040 Physcomitrium patens HOM05D005177 ORTHO05D006175 9.2e-62 241.5 275 44.4
HanXRQChr14g0433031 Helianthus annuus HOM05D005177 ORTHO05D006175 2.7e-61 240.0 268 48.1
SHI06048 Sapria himalayana HOM05D005177 ORTHO05D006175 2.7e-61 240.0 270 45.6
SMO143G0224 Selaginella moellendorffii HOM05D005177 ORTHO05D006175 4.6e-61 239.2 278 45.0
Phvul.007G036300 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 2.3e-60 236.9 297 43.8
Thhalv10013696m.g Eutrema salsugineum HOM05D005177 ORTHO05D006175 3.0e-60 236.5 273 44.3
AL8G36980 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 6.6e-60 235.3 275 44.0
AT5G60370 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 8.6e-60 235.0 275 44.0
BraA02t05734Z Brassica rapa HOM05D005177 ORTHO05D006175 1.1e-59 234.6 275 44.0
Sp6g21970 Schrenkiella parvula HOM05D005177 ORTHO05D006175 1.1e-59 234.6 275 44.0
QL01p037225 Quercus lobata HOM05D005177 ORTHO05D006175 2.5e-59 233.4 319 43.6
Ca_11098_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 4.3e-59 232.6 295 43.7
CiPaw.13G107500 Carya illinoinensis HOM05D005177 ORTHO05D006175 5.6e-59 232.3 212 54.7
BcaC03g13978 Brassica carinata HOM05D005177 ORTHO05D006175 1.6e-58 230.7 275 43.6
Lj5g0027081 Lotus japonicus HOM05D005177 ORTHO05D006175 1.6e-58 230.7 302 44.4
BolC2t07273H Brassica oleracea HOM05D005177 ORTHO05D006175 3.6e-58 229.6 275 43.6
Mapoly0004s0234 Marchantia polymorpha HOM05D005177 ORTHO05D006175 4.7e-58 229.2 273 45.1
BcaB05g22637 Brassica carinata HOM05D000280 ORTHO05D000632 2.3e-57 226.9 275 43.3
Psat6g221840 Pisum sativum HOM05D005177 ORTHO05D006175 5.2e-57 225.7 295 42.0
VMungo0251G1016 Vigna mungo HOM05D005177 ORTHO05D006175 2.6e-56 223.4 296 42.2
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 1.7e-55 220.7 253 46.2
C02p11760 Brassica napus HOM05D005177 ORTHO05D006175 2.9e-55 219.9 252 44.0
SGA_v2.0_scaffold97G29176 Striga asiatica HOM05D005177 ORTHO05D006175 7.1e-54 215.3 275 45.5
TPR.G4931 Trifolium pratense HOM05D005177 ORTHO05D006175 2.7e-53 213.4 293 40.3
Gohir.A03G161400 Gossypium hirsutum HOM05D005177 ORTHO05D006175 7.8e-53 211.8 186 58.6
Lj2C1035T4 Lonicera japonica HOM05D005177 ORTHO05D006175 6.9e-49 198.7 191 51.3
CBR_g2921 Chara braunii HOM05D005177 ORTHO05D006175 2.6e-48 196.8 279 38.4
AUR62025012 Chenopodium quinoa HOM05D005177 ORTHO05D006175 2.6e-48 196.8 178 52.2
Medtr1g062090 Medicago truncatula HOM05D005177 ORTHO05D006175 1.3e-47 194.5 291 37.5
Ca_19242_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 4.9e-47 192.6 182 49.5
FAN21G0634 Fragaria x ananassa HOM05D005177 ORTHO05D006175 3.2e-46 189.9 328 36.6
MD11G1130000 Malus domestica HOM05D005177 ORTHO05D006175 6.6e-44 182.2 185 47.6
Haze_23910 Corylus avellana HOM05D005177 ORTHO05D006175 1.2e-40 171.4 216 40.3
Lalb_Chr06g0165641 Lupinus albus HOM05D005177 ORTHO05D006175 1.2e-40 171.4 310 35.8
CARHR274040 Cardamine hirsuta HOM05D005177 ORTHO05D006175 1.0e-36 158.3 204 45.6
Lalb_Chr03g0027121 Lupinus albus HOM05D005177 ORTHO05D006175 2.4e-33 147.1 137 48.2
Lalb_Chr03g0027131 Lupinus albus HOM05D005177 ORTHO05D006175 2.0e-32 144.1 135 54.8
Glyma.20G125100 Glycine max HOM05D005177 ORTHO05D006175 2.7e-29 133.7 192 41.7
Aqoxy230s004 Aquilegia oxysepala HOM05D000156 ORTHO05D002600 3.7e-26 123.2 110 54.5
HPP92_013896 Vanilla planifolia HOM05D005177 ORTHO05D006175 1.7e-23 114.4 133 48.1
MD12G1113200 Malus domestica HOM05D005177 ORTHO05D006175 1.1e-22 111.7 96 52.1
AUR62033196 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.4e-22 111.3 101 52.5
AUR62037383 Chenopodium quinoa HOM05D005177 ORTHO05D006175 2.5e-22 110.5 101 51.5
MD03G1203800 Malus domestica HOM05D005177 ORTHO05D006175 5.5e-22 109.4 98 50.0
MD02G1279000 Malus domestica HOM05D005177 ORTHO05D006175 1.6e-21 107.8 96 52.1
CDE07G1541 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 3.5e-21 106.7 118 51.7
SalBow7G3352 Salvia bowleyana HOM05D005177 ORTHO05D006175 3.3e-19 100.1 88 52.3
CDE07G0204 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 1.8e-17 94.4 91 53.8
SalBow8G4533 Salvia bowleyana HOM05D005177 ORTHO05D006175 9.0e-17 92.0 85 50.6
SalBow2G1018 Salvia bowleyana HOM05D005177 ORTHO05D006175 2.0e-16 90.9 83 50.6
SEGI_09926 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 3.2e-14 83.6 86 41.9
SEGI_18444 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 1.3e-10 71.6 79 51.9


User provided reference genes

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