Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G3305 Papaver somniferum HOM05D006501 ORTHO05D008241 3.5e-97 358.2 174 100.0
PSO135G1023 Papaver somniferum HOM05D006501 ORTHO05D008241 6.4e-91 337.4 174 94.8
RcHm_v2.0_Chr7g0195201 Rosa chinensis HOM05D006501 ORTHO05D008241 4.7e-57 224.9 171 70.2
Prupe.5G116900 Prunus persica HOM05D006501 ORTHO05D008241 1.1e-55 220.3 174 68.4
MD14G1122900 Malus domestica HOM05D006501 ORTHO05D008241 1.3e-54 216.9 175 66.9
MD06G1104000 Malus domestica HOM05D006501 ORTHO05D008241 6.3e-54 214.5 174 66.7
Rhsim07G0083200 Rhododendron simsii HOM05D006501 ORTHO05D008241 5.3e-53 211.5 168 67.9
GSVIVG01019510001 Vitis vinifera HOM05D006501 ORTHO05D003403 6.9e-53 211.1 175 65.7
Thecc.03G294700 Theobroma cacao HOM05D006501 ORTHO05D008241 4.5e-52 208.4 169 64.5
Cfa022928 Carpinus fangiana HOM05D006501 ORTHO05D008241 5.9e-52 208.0 157 68.8
TWI60G0228 Tripterygium wilfordii HOM05D006501 ORTHO05D008241 5.9e-52 208.0 166 65.7
Atru.chr4.2141 Acer truncatum HOM05D006501 ORTHO05D008241 1.0e-51 207.2 169 66.3
Dinv37544 Davidia involucrata HOM05D006501 ORTHO05D008241 1.0e-51 207.2 165 62.4
CSS0007891 Camellia sinensis var. sinensis HOM05D006501 ORTHO05D008241 1.3e-51 206.8 169 65.7
Nn3g19061 Nelumbo nucifera HOM05D006501 ORTHO05D008241 5.0e-51 204.9 168 66.1
CANSAT21G0520 Cannabis sativa HOM05D006501 ORTHO05D008241 8.5e-51 204.1 173 63.6
vmacro13905 Vaccinium macrocarpon HOM05D006501 ORTHO05D008241 1.1e-50 203.8 180 61.7
Aqoxy7G00141 Aquilegia oxysepala HOM05D006501 ORTHO05D008241 1.4e-50 203.4 170 64.1
BolC9t54619H Brassica oleracea HOM05D006501 ORTHO05D008241 1.4e-50 203.4 153 69.9
Ciclev10022489m.g Citrus clementina HOM05D006501 ORTHO05D008241 1.9e-50 203.0 156 68.6
Gorai.004G134700 Gossypium raimondii HOM05D006501 ORTHO05D008241 1.9e-50 203.0 181 61.9
Oeu009949.1 Olea europaea HOM05D006501 ORTHO05D008241 2.5e-50 202.6 178 64.0
CsaV3_5G002110 Cucumis sativus L. HOM05D006501 ORTHO05D008241 7.2e-50 201.1 135 74.8
Gohir.D08G131800 Gossypium hirsutum HOM05D006501 ORTHO05D008241 7.2e-50 201.1 181 61.3
MELO3C005743.2 Cucumis melo HOM05D006501 ORTHO05D008241 1.2e-49 200.3 139 72.7
Sed0001613 Sechium edule HOM05D006501 ORTHO05D008241 1.6e-49 199.9 117 82.9
MSTRG.25662 Avicennia marina HOM05D006501 ORTHO05D008241 2.1e-49 199.5 118 81.4
BraA09t37076Z Brassica rapa HOM05D006501 ORTHO05D008241 2.1e-49 199.5 153 68.0
COL.COLO4_10671 Corchorus olitorius HOM05D006501 ORTHO05D008241 4.7e-49 198.4 180 61.1
ClCG01G001980 Citrullus lanatus HOM05D006501 ORTHO05D008241 6.1e-49 198.0 154 68.8
VMungo0251G3563 Vigna mungo HOM05D006501 ORTHO05D008241 6.1e-49 198.0 169 63.9
Actinidia27329 Actinidia chinensis HOM05D006501 ORTHO05D008241 8.0e-49 197.6 164 63.4
Hma1.2p1_0952F.1_g241030 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 1.0e-48 197.2 144 69.4
Gohir.A08G100000 Gossypium hirsutum HOM05D006501 ORTHO05D008241 1.8e-48 196.4 170 64.7
Cc08_g15900 Coffea canephora HOM05D006501 ORTHO05D008241 2.3e-48 196.1 140 71.4
Manes.02G011600 Manihot esculenta HOM05D006501 ORTHO05D008241 2.3e-48 196.1 170 62.4
Potri.003G138500 Populus trichocarpa HOM05D006501 ORTHO05D008241 2.3e-48 196.1 172 62.8
Sp2g00400 Schrenkiella parvula HOM05D006501 ORTHO05D008241 3.0e-48 195.7 127 76.4
Solyc08g008270.4 Solanum lycopersicum HOM05D006501 ORTHO05D008241 5.2e-48 194.9 121 79.3
Sopen08g004120 Solanum pennellii HOM05D006501 ORTHO05D008241 6.7e-48 194.5 121 79.3
AT1G64355 Arabidopsis thaliana HOM05D006501 ORTHO05D008241 8.8e-48 194.1 139 71.9
PGSC0003DMG400005788 Solanum tuberosum HOM05D006501 ORTHO05D008241 8.8e-48 194.1 121 78.5
AL2G10510 Arabidopsis lyrata HOM05D006501 ORTHO05D008241 1.5e-47 193.4 138 71.7
THA.LOC104809338 Tarenaya hassleriana HOM05D006501 ORTHO05D008241 1.5e-47 193.4 138 72.5
FAN04G2094 Fragaria x ananassa HOM05D006501 ORTHO05D008241 2.0e-47 193.0 170 62.4
FAN13G2672 Fragaria x ananassa HOM05D006501 ORTHO05D008241 2.0e-47 193.0 170 62.4
FAN08G0187 Fragaria x ananassa HOM05D006501 ORTHO05D008241 2.6e-47 192.6 170 62.4
FAN18G4356 Fragaria x ananassa HOM05D006501 ORTHO05D008241 3.3e-47 192.2 177 62.1
Glyma.05G215800 Glycine max HOM05D006501 ORTHO05D008241 3.3e-47 192.2 117 79.5
CAN.G792.46 Capsicum annuum HOM05D006501 ORTHO05D008241 5.7e-47 191.4 165 63.6
Sabra03G0099700 Salix brachista HOM05D006501 ORTHO05D003403 5.7e-47 191.4 136 74.3
Haze_08636 Corylus avellana HOM05D006501 ORTHO05D008241 7.4e-47 191.0 152 65.8
Eucgr.E00849 Eucalyptus grandis HOM05D006501 ORTHO05D008241 7.4e-47 191.0 134 73.9
Nitab4.5_0006656g0030 Nicotiana tabacum HOM05D006501 ORTHO05D008241 7.4e-47 191.0 126 77.0
Peaxi162Scf00102g01748 Petunia axillaris HOM05D006501 ORTHO05D008241 7.4e-47 191.0 162 64.8
Phvul.002G297000 Phaseolus vulgaris HOM05D006501 ORTHO05D008241 7.4e-47 191.0 165 64.2
FAN18G2585 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.7e-46 189.9 177 61.6
unitig_46.g18618 Utricularia gibba HOM05D006501 ORTHO05D008241 1.7e-46 189.9 132 75.0
PGR042G3674 Punica granatum HOM05D006501 ORTHO05D008241 3.7e-46 188.7 181 60.8
DCAR_005033 Daucus carota HOM05D006501 ORTHO05D008241 4.8e-46 188.3 166 60.2
Hund11400 Selenicereus undatus HOM05D006501 ORTHO05D008241 4.8e-46 188.3 125 78.4
Duzib205G0456 Durio zibethinus HOM05D006501 ORTHO05D008241 6.3e-46 188.0 171 59.6
Migut.A00672 Erythranthe guttata HOM05D006501 ORTHO05D008241 6.3e-46 188.0 150 66.7
HPP92_004586 Vanilla planifolia HOM05D006501 ORTHO05D000003 8.2e-46 187.6 136 72.8
COL.COLO4_10669 Corchorus olitorius HOM05D006501 ORTHO05D008241 1.1e-45 187.2 176 59.1
Sc01g0010190 Simmondsia chinensis HOM05D006501 ORTHO05D008241 1.4e-45 186.8 143 68.5
Actinidia22724 Actinidia chinensis HOM05D006501 ORTHO05D008241 3.1e-45 185.7 126 73.0
SGA_v2.0_scaffold305G47943 Striga asiatica HOM05D006501 ORTHO05D008241 5.3e-45 184.9 178 58.4
Lalb_Chr05g0224191 Lupinus albus HOM05D006501 ORTHO05D008241 7.0e-45 184.5 117 77.8
Zm00001eb296420 Zea mays HOM05D006501 ORTHO05D008241 7.0e-45 184.5 125 76.8
BcaB07g31511 Brassica carinata HOM05D006501 ORTHO05D008241 9.1e-45 184.1 155 65.8
Pp3c8_24130 Physcomitrium patens HOM05D006501 ORTHO05D008241 9.1e-45 184.1 131 74.0
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 1.2e-44 183.7 165 61.2
C09p17200 Brassica napus HOM05D006501 ORTHO05D008241 2.0e-44 183.0 153 65.4
Lj4g0012209 Lotus japonicus HOM05D006501 ORTHO05D008241 2.0e-44 183.0 128 74.2
Medtr8g099345 Medicago truncatula HOM05D006501 ORTHO05D008241 2.0e-44 183.0 144 66.7
AagrBONN_evm.TU.Sc2ySwM_362.747 Anthoceros agrestis HOM05D006501 ORTHO05D008241 2.6e-44 182.6 111 82.9
Ca_17489_v3 Cicer arietinum L. HOM05D006501 ORTHO05D008241 4.5e-44 181.8 118 75.4
Duzib068G1433 Durio zibethinus HOM05D006501 ORTHO05D008241 1.0e-43 180.6 188 54.3
TAR374G0759 Trochodendron aralioides HOM05D006501 ORTHO05D008241 1.3e-43 180.3 118 78.8
A09p14290 Brassica napus HOM05D006501 ORTHO05D008241 1.7e-43 179.9 153 64.7
CiPaw.11G123100 Carya illinoinensis HOM05D006501 ORTHO05D008241 3.8e-43 178.7 172 59.3
TAR374G1465 Trochodendron aralioides HOM05D006501 ORTHO05D008241 3.8e-43 178.7 118 78.0
HanXRQChr09g0256331 Helianthus annuus HOM05D006501 ORTHO05D008241 6.5e-43 177.9 104 83.7
CDE10G1320 Ceratophyllum demersum HOM05D000199 ORTHO05D001448 1.5e-42 176.8 113 77.9
Psat7g027120 Pisum sativum HOM05D006501 ORTHO05D008241 1.5e-42 176.8 165 60.6
MBI07_g24349_MAGBIO Magnolia biondii HOM05D006501 ORTHO05D008241 1.9e-42 176.4 155 63.2
SalBow1G7260 Salvia bowleyana HOM05D006501 ORTHO05D008241 1.9e-42 176.4 140 66.4
SalBow1G8172 Salvia bowleyana HOM05D006501 ORTHO05D008241 1.9e-42 176.4 140 66.4
Cpa.g.sc79.61 Carica papaya HOM05D006501 ORTHO05D008241 2.5e-42 176.0 126 72.2
BcaC04g22628 Brassica carinata HOM05D006501 ORTHO05D008241 1.6e-41 173.3 153 62.7
Sed0024637 Sechium edule HOM05D006501 ORTHO05D008241 2.7e-41 172.6 126 68.3
BcaB07g31509 Brassica carinata HOM05D006501 ORTHO05D008241 6.1e-41 171.4 120 73.3
Mapoly0049s0020 Marchantia polymorpha HOM05D006501 ORTHO05D008241 6.1e-41 171.4 107 77.6
Nitab4.5_0002944g0130 Nicotiana tabacum HOM05D006501 ORTHO05D008241 6.1e-41 171.4 168 60.1
SEGI_07201 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 6.1e-41 171.4 106 78.3
Lsat_1_v5_gn_6_12120 Lactuca sativa HOM05D006501 ORTHO05D008241 8.8e-40 167.5 171 56.1
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 2.6e-39 166.0 117 72.6
Atru.chr9.2018 Acer truncatum HOM05D006501 ORTHO05D008241 4.8e-38 161.8 172 57.0
arahy.Tifrunner.gnm1.ann1.MC0I99 Arachis hypogaea HOM05D006501 ORTHO05D008241 4.1e-37 158.7 142 61.3
arahy.Tifrunner.gnm1.ann1.68SH35 Arachis hypogaea HOM05D006501 ORTHO05D008241 9.1e-37 157.5 112 72.3
Hma1.2p1_0952F.1_g241020 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 1.0e-35 154.1 166 54.8
Cre08.g376450 Chlamydomonas reinhardtii HOM05D006501 ORTHO05D008241 1.6e-33 146.7 100 71.0
Migut.E01245 Erythranthe guttata HOM05D006501 ORTHO05D008241 1.6e-33 146.7 168 52.4
Zm00001eb150250 Zea mays HOM05D006501 ORTHO05D008241 4.0e-32 142.1 102 73.5
QL02p031049 Quercus lobata HOM05D006501 ORTHO05D008241 4.1e-29 132.1 117 63.2
SalBow8G4809 Salvia bowleyana HOM05D006501 ORTHO05D008241 4.1e-29 132.1 133 55.6
BcaC04g22630 Brassica carinata HOM05D006501 ORTHO05D008241 9.1e-29 131.0 89 76.4
FvH4_5g04360 Fragaria vesca HOM05D006501 ORTHO05D008241 5.9e-28 128.3 129 58.9
Thhalv10023703m.g Eutrema salsugineum HOM05D006501 ORTHO05D008241 2.9e-27 125.9 109 66.1
Carub.0002s0043 Capsella rubella HOM05D006501 ORTHO05D008241 8.6e-27 124.4 95 68.4
CARHR046590 Cardamine hirsuta HOM05D006501 ORTHO05D008241 2.5e-26 122.9 90 72.2
Potri.001G093001 Populus trichocarpa HOM05D006501 ORTHO05D008241 1.2e-23 114.0 81 74.1
AUR62019819 Chenopodium quinoa HOM05D006501 ORTHO05D008241 9.8e-23 110.9 72 79.2
AUR62010820 Chenopodium quinoa HOM05D006501 ORTHO05D008241 1.3e-22 110.5 113 60.2
Ah.12g052370 Amaranthus hybridus HOM05D006501 ORTHO05D008241 2.8e-22 109.4 71 80.3
EL10Ac5g12897 Beta vulgaris HOM05D006501 ORTHO05D008241 2.8e-22 109.4 71 80.3
SEGI_03665 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 5.4e-21 105.1 63 82.5
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 2.7e-20 102.8 111 54.1
SGA_v2.0_scaffold144G35857 Striga asiatica HOM05D006501 ORTHO05D008241 1.0e-19 100.9 119 52.1
Atru.chr9.2021 Acer truncatum HOM05D006501 ORTHO05D008241 5.0e-19 98.6 122 53.3
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 6.6e-19 98.2 126 50.8
CBR_g30621 Chara braunii HOM05D006501 ORTHO05D008241 8.6e-19 97.8 68 73.5
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 2.5e-18 96.3 97 52.6
ECA233G1307 Erigeron canadensis HOM05D006501 ORTHO05D008241 2.3e-16 89.7 58 72.4
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 2.0e-15 86.7 107 45.8
Ah.12g052380 Amaranthus hybridus HOM05D006501 ORTHO05D008241 3.4e-15 85.9 53 71.7
Lj2C170T10 Lonicera japonica HOM05D006501 ORTHO05D008241 4.1e-13 79.0 47 78.7
RcHm_v2.0_Chr6g0301591 Rosa chinensis HOM05D001075 ORTHO05D008241 4.3e-10 68.9 61 57.4
MCO14G438 Micromonas commoda HOM05D006501 ORTHO05D008241 5.8e-07 58.5 85 44.7
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 5.8e-07 58.5 89 39.3


User provided reference genes

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