Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 2.5e-222 775.4 479 100.0
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 1.9e-201 706.1 479 93.7
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 7.5e-166 587.8 477 72.5
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 1.3e-128 464.2 314 73.6
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 5.3e-127 458.8 304 73.4
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 2.9e-125 453.0 303 74.3
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 1.9e-124 450.3 319 69.9
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 4.2e-124 449.1 303 72.6
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 7.1e-124 448.4 261 79.7
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 9.3e-124 448.0 297 75.8
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 2.1e-123 446.8 261 79.3
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 2.7e-123 446.4 304 72.0
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 4.6e-123 445.7 302 72.5
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 4.6e-123 445.7 302 72.5
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 7.9e-123 444.9 324 71.0
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 1.0e-122 444.5 298 72.5
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 1.0e-122 444.5 319 68.7
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 1.3e-122 444.1 316 68.7
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 1.8e-122 443.7 302 71.5
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 3.0e-122 443.0 302 71.9
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 3.0e-122 443.0 303 71.0
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 3.0e-122 443.0 302 71.2
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 1.9e-121 440.3 260 80.0
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 2.5e-121 439.9 262 78.6
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 3.3e-121 439.5 306 71.9
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 4.3e-121 439.1 301 71.4
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 4.3e-121 439.1 302 70.5
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 5.6e-121 438.7 321 68.5
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 9.6e-121 438.0 303 70.3
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 2.8e-120 436.4 331 68.3
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 3.7e-120 436.0 261 78.2
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 3.7e-120 436.0 310 70.0
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 6.2e-120 435.3 260 79.2
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 6.2e-120 435.3 304 70.4
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 1.4e-119 434.1 303 69.6
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 1.8e-119 433.7 303 72.9
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 2.4e-119 433.3 261 77.4
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 2.4e-119 433.3 302 70.2
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 4.0e-119 432.6 260 78.5
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 5.3e-119 432.2 266 77.4
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 5.3e-119 432.2 262 77.9
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 6.9e-119 431.8 261 77.8
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 9.0e-119 431.4 263 79.1
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 9.0e-119 431.4 300 73.7
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 1.2e-118 431.0 337 65.6
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 1.2e-118 431.0 262 77.5
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 1.5e-118 430.6 262 77.9
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 1.5e-118 430.6 267 75.7
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 1.5e-118 430.6 302 68.5
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 2.0e-118 430.3 301 70.8
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 3.4e-118 429.5 302 68.9
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 3.4e-118 429.5 301 69.4
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 5.8e-118 428.7 296 74.3
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 7.6e-118 428.3 264 78.4
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 1.0e-117 427.9 261 76.2
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 1.0e-117 427.9 261 77.8
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 1.7e-117 427.2 261 77.4
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 1.7e-117 427.2 314 67.8
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 2.2e-117 426.8 307 70.4
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 2.2e-117 426.8 262 76.3
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 2.2e-117 426.8 314 67.5
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 4.9e-117 425.6 295 70.8
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 6.5e-117 425.2 306 67.3
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 8.4e-117 424.9 322 65.8
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 8.4e-117 424.9 322 66.5
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 8.4e-117 424.9 258 76.7
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 1.1e-116 424.5 258 76.4
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 3.2e-116 422.9 259 76.4
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 3.2e-116 422.9 262 77.5
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 3.2e-116 422.9 300 75.0
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 3.2e-116 422.9 258 76.4
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 9.3e-116 421.4 325 64.3
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 1.2e-115 421.0 256 77.0
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 1.2e-115 421.0 260 77.3
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 1.6e-115 420.6 301 68.4
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 2.1e-115 420.2 255 77.6
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 1.3e-114 417.5 302 67.9
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 1.3e-114 417.5 325 65.8
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 2.3e-114 416.8 305 68.2
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 3.9e-114 416.0 329 63.8
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 6.7e-114 415.2 262 75.6
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 6.7e-114 415.2 259 75.7
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 1.1e-113 414.5 264 73.9
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 1.5e-113 414.1 269 74.0
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 1.9e-113 413.7 302 67.9
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 9.6e-113 411.4 240 81.7
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 2.1e-112 410.2 311 65.6
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 3.7e-112 409.5 323 63.2
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 4.8e-112 409.1 264 73.9
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 1.1e-111 407.9 258 74.0
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 1.1e-111 407.9 264 73.9
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 3.1e-111 406.4 364 58.2
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 9.0e-111 404.8 264 72.7
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 1.5e-110 404.1 256 73.8
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 3.4e-110 402.9 302 65.9
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 4.5e-110 402.5 303 65.0
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 5.9e-110 402.1 304 69.1
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.7e-109 400.6 318 66.0
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 2.2e-109 400.2 302 65.2
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 2.5e-108 396.7 264 72.0
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 3.2e-108 396.4 240 78.3
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 1.2e-107 394.4 264 71.6
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 2.7e-107 393.3 262 72.1
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 7.9e-107 391.7 266 71.4
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 6.7e-106 388.7 324 62.3
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 4.8e-104 382.5 262 71.0
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 6.3e-104 382.1 263 70.7
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 1.8e-103 380.6 309 61.2
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 3.1e-103 379.8 268 69.4
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 6.9e-103 378.6 267 71.5
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 1.9e-100 370.5 259 70.3
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 2.7e-99 366.7 302 60.3
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 9.7e-97 358.2 319 58.3
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 1.7e-96 357.5 264 67.4
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 3.4e-94 349.7 304 54.6
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 5.9e-94 349.0 310 54.2
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 2.2e-93 347.1 312 54.2
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 1.8e-90 337.4 206 74.8
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 4.4e-89 332.8 214 73.4
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 3.3e-81 306.6 218 71.6
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 4.4e-81 306.2 176 82.4
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 9.7e-81 305.1 245 60.4
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 2.2e-80 303.9 184 76.6
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 5.3e-79 299.3 199 71.9
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 2.0e-78 297.4 299 54.5
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 2.9e-77 293.5 251 59.4
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 8.5e-77 292.0 176 79.5
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 8.5e-77 292.0 176 79.5
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 5.5e-76 289.3 175 77.7
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 8.0e-75 285.4 176 77.8
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 1.3e-72 278.1 300 53.7
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 2.2e-72 277.3 220 65.0
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 1.1e-68 265.0 299 48.5
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 6.1e-67 259.2 206 64.6
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 1.8e-66 257.7 237 51.5
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 4.1e-63 246.5 231 55.0
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 8.6e-61 238.8 244 49.6
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 3.7e-56 223.4 192 57.3
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 6.4e-56 222.6 328 43.6
Aqoxy3G03849 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 3.2e-55 220.3 173 66.5
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 5.4e-55 219.5 169 68.0
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 7.0e-55 219.2 169 71.0
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 3.6e-51 206.8 223 55.2
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 4.7e-51 206.5 179 54.2
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 4.0e-50 203.4 225 47.1
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 7.0e-47 192.6 249 43.4
CBR_g54627 Chara braunii HOM05D004797 ORTHO05D005752 8.1e-43 179.1 172 54.1
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 3.4e-41 173.7 232 44.4
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 4.6e-38 163.3 125 60.0
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 6.0e-38 162.9 124 60.5
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 1.3e-29 135.2 92 67.4
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.2e-27 128.6 81 70.4
unitig_60.g25645 Utricularia gibba HOM05D004797 ORTHO05D005752 3.3e-12 77.4 54 66.7
QL06p032345 Quercus lobata HOM05D004797 ORTHO05D050637 2.1e-11 74.7 49 63.3
QL93p0275_0020 Quercus lobata HOM05D004797 ORTHO05D050637 2.1e-11 74.7 49 63.3
Cfa024013 Carpinus fangiana HOM05D040201 ORTHO05D034153 4.9e-08 63.5 148 29.1
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 9.3e-07 59.3 209 27.8
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 9.3e-07 59.3 209 27.8
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 1.2e-06 58.9 209 27.8
PRCOL_00005975 Prasinoderma coloniale HOM05D000032 ORTHO05D028824 1.2e-06 58.9 86 38.4
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 2.1e-06 58.2 167 25.7
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 3.5e-06 57.4 199 29.6
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 6.0e-06 56.6 227 27.3
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 6.0e-06 56.6 209 28.7


User provided reference genes

Program Settings