Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G3152 Papaver somniferum HOM05D007392 ORTHO05D009181 4.4e-74 281.2 139 100.0
PSO339G3225 Papaver somniferum HOM05D007392 ORTHO05D009181 3.1e-72 275.0 140 98.6
Aqoxy2G00525 Aquilegia oxysepala HOM05D007392 ORTHO05D009181 8.6e-38 160.6 139 62.6
TAR623G1707 Trochodendron aralioides HOM05D007392 ORTHO05D009181 8.6e-38 160.6 141 61.0
Nn2g15869 Nelumbo nucifera HOM05D007392 ORTHO05D009181 1.1e-35 153.7 141 58.9
GSVIVG01025476001 Vitis vinifera HOM05D007392 ORTHO05D009181 2.6e-34 149.1 139 57.6
Dinv13477 Davidia involucrata HOM05D007392 ORTHO05D009181 2.3e-30 136.0 142 54.9
TWI34G1824 Tripterygium wilfordii HOM05D007392 ORTHO05D009181 3.0e-30 135.6 139 51.1
Cfa009557 Carpinus fangiana HOM05D007392 ORTHO05D009181 3.6e-28 128.6 139 50.4
Potri.003G221800 Populus trichocarpa HOM05D007392 ORTHO05D009181 3.6e-28 128.6 138 52.2
Potri.001G003300 Populus trichocarpa HOM05D007392 ORTHO05D009181 4.0e-27 125.2 138 51.4
FvH4_3g45780 Fragaria vesca HOM05D007392 ORTHO05D009181 2.0e-26 122.9 146 47.3
FAN11G3804 Fragaria x ananassa HOM05D007392 ORTHO05D009181 2.0e-26 122.9 145 47.6
Manes.15G109800 Manihot esculenta HOM05D007392 ORTHO05D009181 2.0e-26 122.9 144 49.3
RcHm_v2.0_Chr5g0083851 Rosa chinensis HOM05D007392 ORTHO05D009181 7.6e-26 120.9 142 49.3
MD03G1003200 Malus domestica HOM05D007392 ORTHO05D009181 1.4e-24 116.7 150 45.3
Actinidia16241 Actinidia chinensis HOM05D007392 ORTHO05D009181 1.9e-24 116.3 131 51.1
CiPaw.13G177600 Carya illinoinensis HOM05D007392 ORTHO05D009181 2.4e-24 115.9 137 48.9
Lsat_1_v5_gn_6_55560 Lactuca sativa HOM05D007392 ORTHO05D009181 4.1e-24 115.2 144 49.3
Cc01_g00150 Coffea canephora HOM05D007392 ORTHO05D009181 5.4e-24 114.8 145 51.7
Nn7g35849 Nelumbo nucifera HOM05D007392 ORTHO05D009181 1.2e-23 113.6 120 51.7
QL01p003594 Quercus lobata HOM05D007392 ORTHO05D009181 3.5e-23 112.1 166 39.8
FAN16G0802 Fragaria x ananassa HOM05D007392 ORTHO05D009181 6.0e-23 111.3 146 43.2
Eucgr.J01763 Eucalyptus grandis HOM05D007392 ORTHO05D009181 1.0e-22 110.5 140 47.1
Ciclev10017000m.g Citrus clementina HOM05D007392 ORTHO05D009181 1.7e-22 109.8 152 46.1
Actinidia00905 Actinidia chinensis HOM05D007392 ORTHO05D009181 3.0e-22 109.0 139 47.5
ECA233G2404 Erigeron canadensis HOM05D007392 ORTHO05D009181 8.6e-22 107.5 143 46.2
Rhsim13G0233100 Rhododendron simsii HOM05D007392 ORTHO05D009181 1.1e-21 107.1 124 50.8
MELO3C015574.2 Cucumis melo HOM05D007392 ORTHO05D009181 3.3e-21 105.5 141 44.0
CANSAT11G0973 Cannabis sativa HOM05D007392 ORTHO05D009181 5.6e-21 104.8 140 44.3
ClCG03G014560 Citrullus lanatus HOM05D007392 ORTHO05D009181 1.2e-20 103.6 136 44.1
Sopen01g001550 Solanum pennellii HOM05D007392 ORTHO05D009181 4.7e-20 101.7 138 46.4
Sabra03G0165000 Salix brachista HOM05D007392 ORTHO05D009181 1.1e-19 100.5 118 50.0
Solyc01g005530.3 Solanum lycopersicum HOM05D007392 ORTHO05D009181 1.8e-19 99.8 138 45.7
CAN.G1834.12 Capsicum annuum HOM05D007392 ORTHO05D009181 4.0e-19 98.6 139 44.6
PGR119G0135 Punica granatum HOM05D007392 ORTHO05D009181 4.0e-19 98.6 143 42.0
PGSC0003DMG402032165 Solanum tuberosum HOM05D007392 ORTHO05D009181 4.0e-19 98.6 138 47.1
CsaV3_1G041630 Cucumis sativus L. HOM05D007392 ORTHO05D009181 8.9e-19 97.4 141 41.8
Nitab4.5_0006195g0060 Nicotiana tabacum HOM05D007392 ORTHO05D009181 8.9e-19 97.4 120 50.0
Prupe.6G002800 Prunus persica HOM05D007392 ORTHO05D009181 8.9e-19 97.4 125 47.2
MD11G1003000 Malus domestica HOM05D007392 ORTHO05D009181 2.6e-18 95.9 148 39.2
Peaxi162Scf00705g00062 Petunia axillaris HOM05D007392 ORTHO05D009181 2.6e-18 95.9 134 44.0
FAN25G2102 Fragaria x ananassa HOM05D007392 ORTHO05D009181 3.4e-18 95.5 128 43.8
SGA_v2.0_scaffold6G03356 Striga asiatica HOM05D007392 ORTHO05D009181 9.9e-18 94.0 141 45.4
Oeu004754.1 Olea europaea HOM05D007392 ORTHO05D009181 1.3e-17 93.6 119 47.9
SalBow3G3897 Salvia bowleyana HOM05D007392 ORTHO05D009181 1.3e-17 93.6 142 42.3
Nitab4.5_0000551g0100 Nicotiana tabacum HOM05D007392 ORTHO05D009181 1.7e-17 93.2 117 49.6
THA.LOC104810320 Tarenaya hassleriana HOM05D007392 ORTHO05D009181 2.2e-17 92.8 152 40.8
Sc09g0000040 Simmondsia chinensis HOM05D007392 ORTHO05D009181 2.9e-17 92.4 160 40.6
BcaC05g29176 Brassica carinata HOM05D007392 ORTHO05D009181 4.9e-17 91.7 166 41.6
Sed0020032 Sechium edule HOM05D007392 ORTHO05D009181 4.9e-17 91.7 141 39.0
A05p36050 Brassica napus HOM05D007392 ORTHO05D009181 6.4e-17 91.3 162 41.4
C01p51590 Brassica napus HOM05D007392 ORTHO05D009181 6.4e-17 91.3 153 42.5
DCAR_032194 Daucus carota HOM05D007392 ORTHO05D009181 6.4e-17 91.3 131 46.6
BolC1t05102H Brassica oleracea HOM05D007392 ORTHO05D009181 1.9e-16 89.7 153 42.5
Carub.0003s1294 Capsella rubella HOM05D007392 ORTHO05D009181 1.6e-15 86.7 160 43.8
HPP92_026624 Vanilla planifolia HOM05D007392 ORTHO05D009181 1.6e-15 86.7 140 42.1
BcaB04g18766 Brassica carinata HOM05D007392 ORTHO05D009181 2.1e-15 86.3 152 41.4
Sp3g11690 Schrenkiella parvula HOM05D007392 ORTHO05D009181 4.6e-15 85.1 167 38.9
AT3G13480 Arabidopsis thaliana HOM05D007392 ORTHO05D009181 7.8e-15 84.3 162 39.5
A01p40100 Brassica napus HOM05D007392 ORTHO05D009181 7.8e-15 84.3 156 41.7
BraA01t04052Z Brassica rapa HOM05D007392 ORTHO05D009181 7.8e-15 84.3 156 41.7
Oeu059652.1 Olea europaea HOM05D007392 ORTHO05D009181 7.8e-15 84.3 117 46.2
HPP92_024836 Vanilla planifolia HOM05D007392 ORTHO05D009181 1.0e-14 84.0 140 40.7
Thhalv10021633m.g Eutrema salsugineum HOM05D007392 ORTHO05D009181 2.3e-14 82.8 166 39.8
vmacro04261 Vaccinium macrocarpon HOM05D007392 ORTHO05D009181 3.0e-14 82.4 109 48.6
CARHR088140 Cardamine hirsuta HOM05D007392 ORTHO05D009181 5.1e-14 81.6 156 37.8
Migut.D02593 Erythranthe guttata HOM05D007392 ORTHO05D009181 6.6e-14 81.3 141 39.0
Migut.D02571 Erythranthe guttata HOM05D007392 ORTHO05D009181 1.5e-13 80.1 140 40.0
Sabra01G0002400 Salix brachista HOM05D007392 ORTHO05D009181 1.6e-12 76.6 125 44.0
BraA03t12977Z Brassica rapa HOM05D007392 ORTHO05D009181 4.8e-12 75.1 168 36.3
EL10Ac4g10390 Beta vulgaris HOM05D007392 ORTHO05D009181 8.1e-12 74.3 130 40.0
C05p54400 Brassica napus HOM05D007392 ORTHO05D009181 1.1e-11 73.9 145 39.3
SGA_v2.0_scaffold6G03313 Striga asiatica HOM05D007392 ORTHO05D009181 1.4e-11 73.6 138 38.4
AL3G25390 Arabidopsis lyrata HOM05D007392 ORTHO05D009181 1.8e-11 73.2 162 36.4
vmacro23199 Vaccinium macrocarpon HOM05D007392 ORTHO05D009181 1.8e-11 73.2 90 50.0
Cpa.g.sc119.37 Carica papaya HOM05D007392 ORTHO05D009181 2.4e-11 72.8 110 42.7
Prupe.8G040000 Prunus persica HOM05D003947 ORTHO05D004614 2.4e-11 72.8 155 35.5
MSTRG.20935 Avicennia marina HOM05D000287 ORTHO05D000319 4.0e-11 72.0 118 44.9
CiPaw.16G008700 Carya illinoinensis HOM05D003947 ORTHO05D004614 2.0e-10 69.7 146 37.0
MD10G1033900 Malus domestica HOM05D003947 ORTHO05D004614 3.4e-10 68.9 140 35.7
Os03g0795100 Oryza sativa ssp. japonica HOM05D029728 ORTHO05D009181 4.4e-10 68.6 60 58.3
Thecc.08G158700 Theobroma cacao HOM05D003947 ORTHO05D004614 5.8e-10 68.2 152 34.9
FAN27G1126 Fragaria x ananassa HOM05D003947 ORTHO05D004614 7.6e-10 67.8 152 33.6
PGSC0003DMG401025066 Solanum tuberosum HOM05D003947 ORTHO05D004614 7.6e-10 67.8 150 35.3
Gohir.D02G068500 Gossypium hirsutum HOM05D003947 ORTHO05D004614 1.7e-09 66.6 152 34.2
Gorai.005G077400 Gossypium raimondii HOM05D003947 ORTHO05D004614 1.7e-09 66.6 152 34.2
Lj5g0019118 Lotus japonicus HOM05D003947 ORTHO05D004614 1.7e-09 66.6 143 35.0
MD05G1032900 Malus domestica HOM05D003947 ORTHO05D004614 1.7e-09 66.6 152 32.9
Psat6g190840 Pisum sativum HOM05D003947 ORTHO05D004614 2.2e-09 66.2 153 33.3
Aa31LG8G680 Aethionema arabicum HOM05D007392 ORTHO05D009181 2.9e-09 65.9 140 33.6
arahy.Tifrunner.gnm1.ann1.8MR9WY Arachis hypogaea HOM05D003947 ORTHO05D004614 2.9e-09 65.9 139 37.4
Eucgr.F04191 Eucalyptus grandis HOM05D003947 ORTHO05D004614 2.9e-09 65.9 153 37.3
TPR.G17018 Trifolium pratense HOM05D003947 ORTHO05D004614 2.9e-09 65.9 141 35.5
Gohir.A02G062801 Gossypium hirsutum HOM05D003947 ORTHO05D004614 3.8e-09 65.5 152 34.2
Lalb_Chr21g0305571 Lupinus albus HOM05D003947 ORTHO05D004614 3.8e-09 65.5 153 34.6
Zm00001eb301030 Zea mays HOM05D029728 ORTHO05D009181 3.8e-09 65.5 140 38.6
Glyma.20G169600 Glycine max HOM05D003947 ORTHO05D004614 4.9e-09 65.1 141 36.2
Solyc04g071970.4 Solanum lycopersicum HOM05D003947 ORTHO05D004614 4.9e-09 65.1 150 35.3
Sopen04g027950 Solanum pennellii HOM05D003947 ORTHO05D004614 4.9e-09 65.1 150 35.3
GSVIVG01034579001 Vitis vinifera HOM05D003947 ORTHO05D004614 4.9e-09 65.1 141 36.9
Phvul.007G083100 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 6.4e-09 64.7 153 36.6
RcHm_v2.0_Chr6g0274321 Rosa chinensis HOM05D003947 ORTHO05D004614 6.4e-09 64.7 136 35.3
VMungo0720G0983 Vigna mungo HOM05D003947 ORTHO05D004614 6.4e-09 64.7 153 36.6
Duzib116G0212 Durio zibethinus HOM05D003947 ORTHO05D004614 8.4e-09 64.3 152 33.6
Glyma.10G221900 Glycine max HOM05D003947 ORTHO05D004614 8.4e-09 64.3 153 34.0
Nitab4.5_0000099g0180 Nicotiana tabacum HOM05D003947 ORTHO05D004614 8.4e-09 64.3 152 35.5
Nitab4.5_0002812g0010 Nicotiana tabacum HOM05D003947 ORTHO05D004614 8.4e-09 64.3 152 35.5
Zm00001eb213050 Zea mays HOM05D029728 ORTHO05D009181 8.4e-09 64.3 149 33.6
Atru.chr13.2012 Acer truncatum HOM05D003947 ORTHO05D004614 1.1e-08 63.9 156 33.3
C03p46430 Brassica napus HOM05D007392 ORTHO05D009181 1.1e-08 63.9 108 42.6
FvH4_2g13060 Fragaria vesca HOM05D003947 ORTHO05D004614 1.1e-08 63.9 152 34.9
Sed0008617 Sechium edule HOM05D003947 ORTHO05D004614 1.1e-08 63.9 149 34.9
BcaC01g03991 Brassica carinata HOM05D007392 ORTHO05D009181 1.4e-08 63.5 142 35.9
Cfa018286 Carpinus fangiana HOM05D003947 ORTHO05D004614 1.4e-08 63.5 152 31.6
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.4e-08 63.5 150 34.7
HPP92_015638 Vanilla planifolia HOM05D007392 ORTHO05D009181 2.4e-08 62.8 135 38.5
Potri.005G196300 Populus trichocarpa HOM05D003947 ORTHO05D004614 3.2e-08 62.4 157 33.8
Sabra05G0149600 Salix brachista HOM05D003947 ORTHO05D004614 3.2e-08 62.4 157 33.8
PGR044G0664 Punica granatum HOM05D003947 ORTHO05D004614 4.2e-08 62.0 153 33.3
TWI32G0514 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 4.2e-08 62.0 140 32.9
Ciclev10002453m.g Citrus clementina HOM05D003947 ORTHO05D004614 5.4e-08 61.6 154 33.1
Zm00001eb060590 Zea mays HOM05D029728 ORTHO05D009181 5.4e-08 61.6 89 41.6
TWI60G0849 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 9.3e-08 60.8 152 35.5
Actinidia17770 Actinidia chinensis HOM05D003947 ORTHO05D004614 1.2e-07 60.5 141 32.6
AT1G22790 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 1.2e-07 60.5 150 35.3
Carub.0001s2230 Capsella rubella HOM05D003947 ORTHO05D004614 1.2e-07 60.5 150 35.3
AL1G36340 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 1.6e-07 60.1 150 34.7
AT1G55475 Arabidopsis thaliana HOM05D007392 ORTHO05D009181 1.6e-07 60.1 91 41.8
BcaNung06106 Brassica carinata HOM05D003947 ORTHO05D004614 1.6e-07 60.1 162 35.2
CiPaw.15G012800 Carya illinoinensis HOM05D003947 ORTHO05D004614 1.6e-07 60.1 153 34.6
Ca_10666_v3 Cicer arietinum L. HOM05D003947 ORTHO05D004614 1.6e-07 60.1 141 34.8
Lalb_Chr02g0141531 Lupinus albus HOM05D003947 ORTHO05D004614 1.6e-07 60.1 141 35.5
Manes.18G094500 Manihot esculenta HOM05D003947 ORTHO05D004614 1.6e-07 60.1 152 32.2
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.1e-07 59.7 149 34.2
C03p46400 Brassica napus HOM05D007392 ORTHO05D009181 2.7e-07 59.3 140 35.7
CANSAT25G3237 Cannabis sativa HOM05D003947 ORTHO05D004614 2.7e-07 59.3 145 33.8
C05p21890 Brassica napus HOM05D003947 ORTHO05D004614 3.5e-07 58.9 162 34.6
Cc10_g15190 Coffea canephora HOM05D003947 ORTHO05D004614 3.5e-07 58.9 152 32.9
Hma1.2p1_0678F.1_g202000 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 3.5e-07 58.9 152 32.9
Peaxi162Scf00360g00029 Petunia axillaris HOM05D003947 ORTHO05D004614 3.5e-07 58.9 152 34.2
PSO170G0396 Papaver somniferum HOM05D003947 ORTHO05D004614 4.6e-07 58.5 147 34.0
Actinidia29546 Actinidia chinensis HOM05D003947 ORTHO05D004614 6.0e-07 58.2 152 32.2
ATR1120G111 Amborella trichopoda HOM05D003947 ORTHO05D004614 6.0e-07 58.2 136 34.6
BolC5t30884H Brassica oleracea HOM05D003947 ORTHO05D004614 6.0e-07 58.2 164 34.8
Duzib093G0177 Durio zibethinus HOM05D003947 ORTHO05D004614 6.0e-07 58.2 152 32.9
Potri.002G064900 Populus trichocarpa HOM05D003947 ORTHO05D004614 6.0e-07 58.2 142 34.5
Lalb_Chr19g0130101 Lupinus albus HOM05D003947 ORTHO05D004614 1.0e-06 57.4 134 32.8
Sabra02G0051800 Salix brachista HOM05D003947 ORTHO05D004614 1.0e-06 57.4 142 34.5
AL1G63490 Arabidopsis lyrata HOM05D007392 ORTHO05D009181 1.3e-06 57.0 95 44.2
A08p00640 Brassica napus HOM05D007392 ORTHO05D009181 1.3e-06 57.0 88 44.3
C03p92800 Brassica napus HOM05D007392 ORTHO05D009181 1.3e-06 57.0 87 40.2
BraA08t32122Z Brassica rapa HOM05D007392 ORTHO05D009181 1.3e-06 57.0 88 44.3
BcaC01g01528 Brassica carinata HOM05D007392 ORTHO05D009181 1.7e-06 56.6 87 40.2
BolC3t21586H Brassica oleracea HOM05D007392 ORTHO05D009181 1.7e-06 56.6 87 40.2
Carub.0001s4396 Capsella rubella HOM05D007392 ORTHO05D009181 1.7e-06 56.6 95 38.9
THA.LOC104813088 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 1.7e-06 56.6 138 34.1
arahy.Tifrunner.gnm1.ann1.H1TMWI Arachis hypogaea HOM05D003947 ORTHO05D004614 3.0e-06 55.8 142 35.9
Hma1.2p1_0358F.1_g134715 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 3.0e-06 55.8 155 31.0
Manes.02G182900 Manihot esculenta HOM05D003947 ORTHO05D004614 3.0e-06 55.8 157 31.2
Os01g0589700 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 3.0e-06 55.8 142 33.8
Aa31LG10G780 Aethionema arabicum HOM05D007392 ORTHO05D009181 5.1e-06 55.1 73 50.7
TAR381G0583 Trochodendron aralioides HOM05D000488 ORTHO05D000347 5.1e-06 55.1 49 59.2
Actinidia04751 Actinidia chinensis HOM05D003947 ORTHO05D004614 6.6e-06 54.7 132 33.3
CBR_g12019 Chara braunii HOM05D003947 ORTHO05D004614 6.6e-06 54.7 78 42.3
ClCG08G003050 Citrullus lanatus HOM05D003947 ORTHO05D004614 6.6e-06 54.7 135 35.6
Gohir.D05G247600 Gossypium hirsutum HOM05D003947 ORTHO05D004614 6.6e-06 54.7 152 33.6
Gorai.009G258400 Gossypium raimondii HOM05D003947 ORTHO05D004614 6.6e-06 54.7 152 33.6
TAR376G1220 Trochodendron aralioides HOM05D003947 ORTHO05D004614 6.6e-06 54.7 138 31.9
QL02p038162 Quercus lobata HOM05D003947 ORTHO05D004614 8.7e-06 54.3 128 31.2
Hund17479 Selenicereus undatus HOM05D003947 ORTHO05D004614 8.7e-06 54.3 137 35.8


User provided reference genes

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