Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G3148 Papaver somniferum HOM05D005357 ORTHO05D006354 1.6e-274 948.7 461 100.0
PSO585G0030 Papaver somniferum HOM05D005357 ORTHO05D006354 7.3e-259 896.7 456 96.1
TAR633G0560 Trochodendron aralioides HOM05D005357 ORTHO05D006354 1.1e-145 520.8 511 59.3
MBI06_g17209_MAGBIO Magnolia biondii HOM05D005357 ORTHO05D006354 2.5e-142 509.6 504 59.1
TAR636G3085 Trochodendron aralioides HOM05D005357 ORTHO05D006354 5.2e-140 501.9 486 59.5
Aqoxy1G00739 Aquilegia oxysepala HOM05D005357 ORTHO05D006354 1.2e-136 490.7 501 55.7
Nn1g02852 Nelumbo nucifera HOM05D005357 ORTHO05D006354 2.8e-133 479.6 503 56.9
Actinidia13789 Actinidia chinensis HOM05D005357 ORTHO05D006354 2.7e-128 463.0 486 54.5
CiPaw.09G205000 Carya illinoinensis HOM05D005357 ORTHO05D006354 4.6e-128 462.2 496 54.0
Peaxi162Scf00141g00133 Petunia axillaris HOM05D005357 ORTHO05D006354 3.0e-127 459.5 499 52.9
Nitab4.5_0006254g0010 Nicotiana tabacum HOM05D005357 ORTHO05D006354 1.2e-125 454.1 497 52.9
Prupe.6G269500 Prunus persica HOM05D005357 ORTHO05D006354 1.4e-124 450.7 491 52.3
Nitab4.5_0000008g0560 Nicotiana tabacum HOM05D005357 ORTHO05D006354 5.2e-124 448.7 487 52.8
RcHm_v2.0_Chr3g0463991 Rosa chinensis HOM05D005357 ORTHO05D006354 5.8e-123 445.3 493 52.1
ClCG10G021740 Citrullus lanatus HOM05D005357 ORTHO05D006354 2.2e-122 443.4 490 51.4
TWI77G0073 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 2.2e-122 443.4 498 52.4
QL07p036221 Quercus lobata HOM05D005357 ORTHO05D006354 2.9e-122 443.0 495 52.7
Actinidia29139 Actinidia chinensis HOM05D005357 ORTHO05D006354 4.9e-122 442.2 487 53.4
Cpa.g.sc312.3 Carica papaya HOM05D005357 ORTHO05D006354 9.3e-121 438.0 480 52.3
Gohir.D09G158500 Gossypium hirsutum HOM05D005357 ORTHO05D006354 9.3e-121 438.0 484 52.3
Dinv37091 Davidia involucrata HOM05D005357 ORTHO05D006354 1.6e-120 437.2 499 52.5
FvH4_6g12190 Fragaria vesca HOM05D005357 ORTHO05D006354 2.1e-120 436.8 492 51.2
FAN09G0023 Fragaria x ananassa HOM05D005357 ORTHO05D006354 2.1e-120 436.8 492 51.2
FAN14G1666 Fragaria x ananassa HOM05D005357 ORTHO05D006354 2.1e-120 436.8 492 51.2
Cfa017262 Carpinus fangiana HOM05D005357 ORTHO05D006354 4.6e-120 435.6 502 51.6
FAN14G2781 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.0e-119 434.5 492 51.0
Hma1.2p1_0703F.1_g206335 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 1.7e-119 433.7 497 49.9
CAN.G284.13 Capsicum annuum HOM05D005357 ORTHO05D006354 6.6e-119 431.8 500 51.0
MD12G1159000 Malus domestica HOM05D005357 ORTHO05D006354 6.6e-119 431.8 491 52.7
Thecc.05G023500 Theobroma cacao HOM05D005357 ORTHO05D006354 8.7e-119 431.4 497 51.9
MD04G1145200 Malus domestica HOM05D005357 ORTHO05D006354 4.3e-118 429.1 479 52.8
FAN05G3392 Fragaria x ananassa HOM05D005357 ORTHO05D006354 9.6e-118 427.9 492 50.6
Gorai.006G180200 Gossypium raimondii HOM05D005357 ORTHO05D006354 1.3e-117 427.6 484 51.7
FAN02G3235 Fragaria x ananassa HOM05D005357 ORTHO05D006354 2.1e-117 426.8 470 52.3
COL.COLO4_14619 Corchorus olitorius HOM05D005357 ORTHO05D006354 1.1e-116 424.5 498 50.4
Duzib093G0024 Durio zibethinus HOM05D005357 ORTHO05D006354 6.9e-116 421.8 498 50.8
CANSAT35G1827 Cannabis sativa HOM05D005357 ORTHO05D006354 2.6e-115 419.9 490 50.8
Potri.006G095600 Populus trichocarpa HOM05D005357 ORTHO05D006354 3.4e-115 419.5 477 51.4
Duzib128G1243 Durio zibethinus HOM05D005357 ORTHO05D006354 1.1e-113 414.5 493 50.5
Cc06_g01760 Coffea canephora HOM05D005357 ORTHO05D006354 3.2e-113 412.9 501 49.9
Haze_20938 Corylus avellana HOM05D005357 ORTHO05D006354 7.1e-113 411.8 472 51.9
Gohir.A09G163000 Gossypium hirsutum HOM05D005357 ORTHO05D006354 9.3e-113 411.4 497 49.5
TWI74G0304 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 9.3e-113 411.4 449 52.3
Duzib106G1773 Durio zibethinus HOM05D005357 ORTHO05D006354 1.6e-112 410.6 497 49.5
Sed0007832 Sechium edule HOM05D005357 ORTHO05D006354 2.7e-112 409.8 437 54.2
Manes.08G086900 Manihot esculenta HOM05D005357 ORTHO05D006354 1.3e-111 407.5 488 51.0
CsaV3_3G034230 Cucumis sativus L. HOM05D005357 ORTHO05D006354 1.9e-110 403.7 492 48.4
Ciclev10011563m.g Citrus clementina HOM05D005357 ORTHO05D006354 9.0e-108 394.8 501 51.1
MELO3C009198.2 Cucumis melo HOM05D005357 ORTHO05D006354 6.4e-106 388.7 468 48.7
SalBow3G4061 Salvia bowleyana HOM05D005357 ORTHO05D006354 2.7e-104 383.3 481 49.9
Eucgr.B02762 Eucalyptus grandis HOM05D005357 ORTHO05D006354 3.3e-102 376.3 513 48.0
GSVIVG01034021001 Vitis vinifera HOM05D005357 ORTHO05D006354 1.2e-99 367.9 427 51.3
MSTRG.5603 Avicennia marina HOM05D005357 ORTHO05D006354 2.0e-99 367.1 477 50.3
Migut.J00234 Erythranthe guttata HOM05D005357 ORTHO05D006354 2.2e-98 363.6 463 50.8
EL10As5g23477 Beta vulgaris HOM05D005357 ORTHO05D006354 3.8e-98 362.8 457 50.1
Lj2A78G31 Lonicera japonica HOM05D005357 ORTHO05D006354 8.4e-98 361.7 473 49.0
PGR031G1436 Punica granatum HOM05D005357 ORTHO05D006354 4.2e-97 359.4 524 45.0
vmacro01296 Vaccinium macrocarpon HOM05D005357 ORTHO05D006354 7.1e-97 358.6 480 47.1
AUR62011861 Chenopodium quinoa HOM05D005357 ORTHO05D006354 3.9e-95 352.8 393 53.9
PGSC0003DMG402020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 5.1e-95 352.4 484 44.8
AUR62024704 Chenopodium quinoa HOM05D005357 ORTHO05D006354 8.7e-95 351.7 421 51.5
Gorai.012G111100 Gossypium raimondii HOM05D005357 ORTHO05D006354 3.3e-94 349.7 390 52.8
HPP92_021066 Vanilla planifolia HOM05D005357 ORTHO05D006354 1.3e-93 347.8 503 44.7
CDE04G3126 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 4.8e-93 345.9 460 49.1
Glyma.18G195500 Glycine max HOM05D005357 ORTHO05D006354 8.2e-93 345.1 386 51.6
Sopen09g006960 Solanum pennellii HOM05D005357 ORTHO05D006354 8.2e-93 345.1 470 45.3
Sabra06G0073400 Salix brachista HOM05D005357 ORTHO05D006354 1.4e-92 344.4 574 41.5
Gohir.A04G087700 Gossypium hirsutum HOM05D005357 ORTHO05D006354 9.0e-92 341.7 374 54.3
Glyma.07G144300 Glycine max HOM05D005357 ORTHO05D006354 1.5e-91 340.9 386 51.0
Medtr7g056183 Medicago truncatula HOM05D005357 ORTHO05D006354 1.5e-91 340.9 477 44.4
SGA_v2.0_scaffold85G26772 Striga asiatica HOM05D005357 ORTHO05D006354 2.0e-91 340.5 440 48.2
arahy.Tifrunner.gnm1.ann1.H8VZ0K Arachis hypogaea HOM05D005357 ORTHO05D006354 2.6e-91 340.1 480 43.1
Medtr7g066710 Medicago truncatula HOM05D005357 ORTHO05D006354 7.6e-91 338.6 478 44.6
Phvul.008G108800 Phaseolus vulgaris HOM05D005357 ORTHO05D006354 2.2e-90 337.0 384 51.0
Hund02920 Selenicereus undatus HOM05D005357 ORTHO05D006354 6.5e-90 335.5 399 50.4
arahy.Tifrunner.gnm1.ann1.5ZZ6F4 Arachis hypogaea HOM05D005357 ORTHO05D006354 5.5e-89 332.4 499 41.9
THA.LOC104827038 Tarenaya hassleriana HOM05D005357 ORTHO05D006354 1.0e-87 328.2 468 45.7
Lj3g0024478 Lotus japonicus HOM05D005357 ORTHO05D006354 2.3e-87 327.0 475 44.0
TPR.G1557 Trifolium pratense HOM05D005357 ORTHO05D006354 5.1e-87 325.9 387 49.1
Lalb_Chr01g0022881 Lupinus albus HOM05D005357 ORTHO05D006354 8.7e-87 325.1 475 44.4
Ah.11g049570 Amaranthus hybridus HOM05D005357 ORTHO05D006354 7.4e-86 322.0 419 50.6
Lalb_Chr03g0042941 Lupinus albus HOM05D005357 ORTHO05D006354 1.6e-85 320.9 485 44.3
Gohir.D04G128100 Gossypium hirsutum HOM05D005357 ORTHO05D006354 2.4e-84 317.0 390 50.0
DCAR_005589 Daucus carota HOM05D005357 ORTHO05D006354 3.1e-84 316.6 482 43.6
Ca_09168_v3 Cicer arietinum L. HOM05D005357 ORTHO05D006354 4.1e-84 316.2 444 45.0
Carub.0006s0073 Capsella rubella HOM05D005357 ORTHO05D006354 3.8e-82 309.7 377 49.9
CDE03G0086 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 1.9e-81 307.4 442 46.8
BraA10t45393Z Brassica rapa HOM05D005357 ORTHO05D006354 3.2e-81 306.6 376 49.7
Hund09607 Selenicereus undatus HOM05D005357 ORTHO05D006354 3.2e-81 306.6 408 47.1
Sp6g40520 Schrenkiella parvula HOM05D005357 ORTHO05D006354 5.5e-81 305.8 373 50.9
Aa31LG1G22800 Aethionema arabicum HOM05D005357 ORTHO05D006354 2.7e-80 303.5 431 45.7
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 2.7e-80 303.5 373 50.1
Oeu030537.4 Olea europaea HOM05D005357 ORTHO05D006354 3.6e-80 303.1 468 42.9
Os10g0494500 Oryza sativa ssp. japonica HOM05D005357 ORTHO05D006354 7.9e-80 302.0 432 45.1
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 1.0e-79 301.6 382 49.2
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 1.0e-79 301.6 375 50.4
AT5G01160 Arabidopsis thaliana HOM05D005357 ORTHO05D006354 3.0e-79 300.1 376 48.7
Zm00001eb044800 Zea mays HOM05D005357 ORTHO05D006354 5.1e-79 299.3 473 45.0
BcaB05g21942 Brassica carinata HOM05D005357 ORTHO05D006354 6.7e-79 298.9 378 49.2
BcaNung02762 Brassica carinata HOM05D005357 ORTHO05D006354 8.8e-79 298.5 383 49.9
Thhalv10014073m.g Eutrema salsugineum HOM05D005357 ORTHO05D006354 3.3e-78 296.6 365 50.4
AL6G11040 Arabidopsis lyrata HOM05D005357 ORTHO05D006354 5.7e-78 295.8 383 47.8
CARHR211480 Cardamine hirsuta HOM05D005357 ORTHO05D006354 2.8e-77 293.5 380 48.2
SGA_v2.0_scaffold75G24995 Striga asiatica HOM05D005357 ORTHO05D006354 8.2e-77 292.0 462 42.9
HanXRQChr13g0406371 Helianthus annuus HOM05D005357 ORTHO05D006354 6.9e-76 288.9 409 45.7
ECA248G2096 Erigeron canadensis HOM05D005357 ORTHO05D006354 2.5e-73 280.4 372 46.2
BcaNung02766 Brassica carinata HOM05D005357 ORTHO05D006354 1.2e-72 278.1 389 47.3
Sc05g0000650 Simmondsia chinensis HOM05D005357 ORTHO05D006354 3.6e-72 276.6 310 53.2
Dinv03649 Davidia involucrata HOM05D005357 ORTHO05D006354 2.3e-71 273.9 418 47.4
Oeu044369.1 Olea europaea HOM05D005357 ORTHO05D006354 3.9e-71 273.1 406 44.8
CSS0020158 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 3.1e-68 263.5 384 45.6
Lsat_1_v5_gn_5_155380 Lactuca sativa HOM05D005357 ORTHO05D006354 8.5e-66 255.4 245 57.6
PGSC0003DMG400002411 Solanum tuberosum HOM05D005357 ORTHO05D006354 6.1e-64 249.2 381 42.5
Atru.chr8.2135 Acer truncatum HOM05D005357 ORTHO05D006354 3.0e-63 246.9 386 43.3
Zm00001eb221140 Zea mays HOM05D005357 ORTHO05D006354 3.7e-61 240.0 232 58.2
HanXRQChr13g0397571 Helianthus annuus HOM05D005357 ORTHO05D006354 1.7e-58 231.1 397 40.3
unitig_22.g6590 Utricularia gibba HOM05D005357 ORTHO05D006354 4.2e-57 226.5 454 39.0
SHI12776 Sapria himalayana HOM05D005357 ORTHO05D006354 5.2e-55 219.5 446 39.7
HanXRQChr13g0397921 Helianthus annuus HOM05D005357 ORTHO05D006354 4.4e-54 216.5 238 50.4
SEGI_31043 Sequoiadendron giganteum HOM05D005357 ORTHO05D006354 3.5e-51 206.8 224 51.3
Psat3g131000 Pisum sativum HOM05D005357 ORTHO05D006354 4.5e-51 206.5 302 44.0
Solyc09g013120.4 Solanum lycopersicum HOM05D005357 ORTHO05D006354 1.2e-48 198.4 369 39.3
DCAR_008325 Daucus carota HOM05D005357 ORTHO05D006354 4.1e-44 183.3 231 46.8
ATR0605G041 Amborella trichopoda HOM05D005357 ORTHO05D006354 1.2e-40 171.8 295 40.0
Atru.chr8.2134 Acer truncatum HOM05D005357 ORTHO05D006354 8.3e-37 159.1 108 70.4
VMungo1383G1762 Vigna mungo HOM05D005357 ORTHO05D006354 1.6e-35 154.8 361 34.6
Mapoly0068s0057 Marchantia polymorpha HOM05D005357 ORTHO05D006354 1.7e-34 151.4 193 42.5
SEGI_08495 Sequoiadendron giganteum HOM05D054687 ORTHO05D006354 5.0e-34 149.8 426 31.5
Hma1.2p1_0125F.1_g058510 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 8.6e-34 149.1 349 34.4
Pp3c23_4130 Physcomitrium patens HOM05D005357 ORTHO05D006354 4.7e-32 143.3 252 35.3
Pp3c20_10060 Physcomitrium patens HOM05D005357 ORTHO05D006354 1.4e-31 141.7 290 35.9
Pp3c8_18230 Physcomitrium patens HOM05D005357 ORTHO05D006354 7.5e-30 136.0 162 42.0
CBR_g24154 Chara braunii HOM05D005357 ORTHO05D006354 2.3e-23 114.4 106 45.3
PGSC0003DMG401020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 1.2e-22 112.1 84 65.5
Rhsim01G0256700 Rhododendron simsii HOM05D005357 ORTHO05D004574 8.6e-18 95.9 166 39.2
CSS0030830 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 2.8e-16 90.9 68 66.2
Oeu055280.1 Olea europaea HOM05D005357 ORTHO05D006354 2.9e-13 80.9 243 31.3
Glyma.18G195800 Glycine max HOM05D005357 ORTHO05D006354 1.2e-11 75.5 133 37.6
RcHm_v2.0_Chr3g0492291 Rosa chinensis HOM05D005357 ORTHO05D006354 3.4e-06 57.4 53 60.4


User provided reference genes

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