Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G3120 Papaver somniferum HOM05D005281 ORTHO05D006351 9.4e-104 380.2 190 100.0
PSO384G0667 Papaver somniferum HOM05D005281 ORTHO05D006351 4.4e-61 238.4 121 95.0
PSO339G3076 Papaver somniferum HOM05D005281 ORTHO05D006351 2.8e-55 219.2 117 89.7
Prupe.6G057400 Prunus persica HOM05D005281 ORTHO05D006351 5.1e-17 92.0 96 56.2
Dinv14436 Davidia involucrata HOM05D005281 ORTHO05D006351 6.7e-17 91.7 106 50.9
RcHm_v2.0_Chr5g0069461 Rosa chinensis HOM05D005281 ORTHO05D006351 8.8e-17 91.3 96 53.1
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 1.1e-16 90.9 104 47.1
Manes.01G161500 Manihot esculenta HOM05D005281 ORTHO05D006351 1.5e-16 90.5 96 56.2
QL01p038286 Quercus lobata HOM05D005281 ORTHO05D006351 1.5e-16 90.5 111 50.5
AUR62020131 Chenopodium quinoa HOM05D005281 ORTHO05D006351 2.0e-16 90.1 131 45.0
FAN21G2151 Fragaria x ananassa HOM05D005281 ORTHO05D006351 2.0e-16 90.1 108 49.1
Nn2g11502 Nelumbo nucifera HOM05D005281 ORTHO05D006351 2.0e-16 90.1 96 52.1
TAR633G1154 Trochodendron aralioides HOM05D005281 ORTHO05D006351 2.0e-16 90.1 129 47.3
Gohir.D07G108000 Gossypium hirsutum HOM05D005281 ORTHO05D006351 2.5e-16 89.7 115 46.1
Gohir.A07G104200 Gossypium hirsutum HOM05D005281 ORTHO05D006351 3.3e-16 89.4 115 46.1
FvH4_3g38560 Fragaria vesca HOM05D005281 ORTHO05D006351 5.7e-16 88.6 96 52.1
FAN11G1688 Fragaria x ananassa HOM05D005281 ORTHO05D006351 5.7e-16 88.6 96 52.1
FAN16G1244 Fragaria x ananassa HOM05D005281 ORTHO05D006351 5.7e-16 88.6 96 52.1
FAN25G0418 Fragaria x ananassa HOM05D005281 ORTHO05D006351 5.7e-16 88.6 96 52.1
PSO408G0001 Papaver somniferum HOM05D000212 ORTHO05D000225 7.4e-16 88.2 41 100.0
THA.LOC104799394 Tarenaya hassleriana HOM05D005281 ORTHO05D006351 7.4e-16 88.2 101 45.5
MD03G1070600 Malus domestica HOM05D005281 ORTHO05D006351 9.7e-16 87.8 96 56.2
Aqoxy4G02562 Aquilegia oxysepala HOM05D005281 ORTHO05D006351 1.3e-15 87.4 134 39.6
SalBow2G0889 Salvia bowleyana HOM05D005281 ORTHO05D006351 1.3e-15 87.4 96 51.0
Gorai.001G116100 Gossypium raimondii HOM05D005281 ORTHO05D006351 1.7e-15 87.0 115 45.2
PGR119G1117 Punica granatum HOM05D005281 ORTHO05D006351 1.7e-15 87.0 96 49.0
Potri.009G046300 Populus trichocarpa HOM05D005281 ORTHO05D006351 2.8e-15 86.3 96 54.2
Sc21g0006330 Simmondsia chinensis HOM05D005281 ORTHO05D006351 2.8e-15 86.3 99 51.5
PGSC0003DMG400004159 Solanum tuberosum HOM05D005281 ORTHO05D006351 2.8e-15 86.3 119 41.2
AUR62001645 Chenopodium quinoa HOM05D005281 ORTHO05D006351 4.8e-15 85.5 116 45.7
Lj1C137G10 Lonicera japonica HOM05D005281 ORTHO05D006351 4.8e-15 85.5 101 47.5
ClCG02G019550 Citrullus lanatus HOM05D005281 ORTHO05D006351 8.2e-15 84.7 101 48.5
Thhalv10013268m.g Eutrema salsugineum HOM05D005281 ORTHO05D006351 8.2e-15 84.7 95 49.5
MD11G1074600 Malus domestica HOM05D005281 ORTHO05D006351 8.2e-15 84.7 96 55.2
Hund04860 Selenicereus undatus HOM05D005281 ORTHO05D006351 8.2e-15 84.7 105 46.7
COL.COLO4_19159 Corchorus olitorius HOM05D005281 ORTHO05D006351 1.1e-14 84.3 95 52.6
Oeu045534.1 Olea europaea HOM05D005281 ORTHO05D006351 1.4e-14 84.0 96 47.9
CsaV3_6G016220 Cucumis sativus L. HOM05D005281 ORTHO05D006351 1.8e-14 83.6 101 48.5
AT5G58720 Arabidopsis thaliana HOM05D005281 ORTHO05D006351 2.4e-14 83.2 99 46.5
Medtr3g463770 Medicago truncatula HOM05D005281 ORTHO05D006351 2.4e-14 83.2 94 50.0
Sabra09G0033400 Salix brachista HOM05D005281 ORTHO05D006351 2.4e-14 83.2 97 48.5
BcaC03g14078 Brassica carinata HOM05D005281 ORTHO05D006351 4.1e-14 82.4 96 49.0
Lj6g0025988 Lotus japonicus HOM05D005281 ORTHO05D006351 4.1e-14 82.4 94 50.0
Aa31LG11G480 Aethionema arabicum HOM05D005281 ORTHO05D006351 5.3e-14 82.0 95 50.5
Carub.0008s1934 Capsella rubella HOM05D005281 ORTHO05D006351 5.3e-14 82.0 95 47.4
CiPaw.14G059500 Carya illinoinensis HOM05D005281 ORTHO05D006351 5.3e-14 82.0 111 47.7
Ciclev10028198m.g Citrus clementina HOM05D005281 ORTHO05D006351 5.3e-14 82.0 96 46.9
Sopen06g002070 Solanum pennellii HOM05D005281 ORTHO05D006351 5.3e-14 82.0 119 40.3
TWI31G0978 Tripterygium wilfordii HOM05D005281 ORTHO05D006351 5.3e-14 82.0 96 52.1
Cpa.g.sc415.3 Carica papaya HOM05D005281 ORTHO05D006351 6.9e-14 81.6 103 44.7
Thecc.09G301700 Theobroma cacao HOM05D005281 ORTHO05D006351 6.9e-14 81.6 111 47.7
arahy.Tifrunner.gnm1.ann1.EQN3LQ Arachis hypogaea HOM05D005281 ORTHO05D006351 1.2e-13 80.9 127 41.7
Ca_14931_v3 Cicer arietinum L. HOM05D005281 ORTHO05D006351 1.2e-13 80.9 103 43.7
Psat5g159280 Pisum sativum HOM05D005281 ORTHO05D006351 1.2e-13 80.9 96 45.8
GSVIVG01024739001 Vitis vinifera HOM05D005281 ORTHO05D006351 1.2e-13 80.9 96 46.9
A02p07560 Brassica napus HOM05D005281 ORTHO05D006351 1.5e-13 80.5 96 47.9
BraA02t05834Z Brassica rapa HOM05D005281 ORTHO05D006351 2.0e-13 80.1 96 46.9
arahy.Tifrunner.gnm1.ann1.UVB96A Arachis hypogaea HOM05D005281 ORTHO05D006351 2.6e-13 79.7 127 41.7
Nitab4.5_0000102g0060 Nicotiana tabacum HOM05D005281 ORTHO05D006351 2.6e-13 79.7 96 46.9
Migut.N00784 Erythranthe guttata HOM05D005281 ORTHO05D006351 3.4e-13 79.3 95 45.3
AL8G35000 Arabidopsis lyrata HOM05D005281 ORTHO05D006351 4.5e-13 79.0 95 46.3
CANSAT54G2372 Cannabis sativa HOM05D005281 ORTHO05D006351 4.5e-13 79.0 97 46.4
DCAR_007376 Daucus carota HOM05D005281 ORTHO05D006351 4.5e-13 79.0 116 44.0
Sp6g20410 Schrenkiella parvula HOM05D005281 ORTHO05D006351 5.9e-13 78.6 95 45.3
Nitab4.5_0005463g0020 Nicotiana tabacum HOM05D005281 ORTHO05D006351 7.7e-13 78.2 96 46.9
BcaB05g22447 Brassica carinata HOM05D005281 ORTHO05D006351 1.0e-12 77.8 122 41.8
vmacro14592 Vaccinium macrocarpon HOM05D005281 ORTHO05D006351 1.0e-12 77.8 97 47.4
Phvul.006G068100 Phaseolus vulgaris HOM05D005281 ORTHO05D006351 1.3e-12 77.4 94 46.8
VMungo0540G0631 Vigna mungo HOM05D005281 ORTHO05D006351 1.7e-12 77.0 94 45.7
Actinidia23889 Actinidia chinensis HOM05D005281 ORTHO05D006351 2.2e-12 76.6 104 45.2
Sed0014563 Sechium edule HOM05D005281 ORTHO05D006351 2.2e-12 76.6 101 42.6
Atru.chr3.4219 Acer truncatum HOM05D005281 ORTHO05D006351 2.9e-12 76.3 96 44.8
Rhsim01G0236400 Rhododendron simsii HOM05D005281 ORTHO05D006351 2.9e-12 76.3 96 46.9
C02p13130 Brassica napus HOM05D005281 ORTHO05D006351 3.8e-12 75.9 96 46.9
BolC2t07431H Brassica oleracea HOM05D005281 ORTHO05D006351 3.8e-12 75.9 96 46.9
SGA_v2.0_scaffold120G32911 Striga asiatica HOM05D005281 ORTHO05D006351 3.8e-12 75.9 96 46.9
Duzib150G1450 Durio zibethinus HOM05D005281 ORTHO05D006351 5.0e-12 75.5 94 47.9
CARHR272630 Cardamine hirsuta HOM05D005281 ORTHO05D006351 8.5e-12 74.7 94 44.7
Glyma.18G063000 Glycine max HOM05D005281 ORTHO05D006351 8.5e-12 74.7 93 49.5
TPR.G21171 Trifolium pratense HOM05D005281 ORTHO05D006351 8.5e-12 74.7 94 43.6
Cc01_g14190 Coffea canephora HOM05D005281 ORTHO05D006351 1.1e-11 74.3 96 44.8
BcaB01g04640 Brassica carinata HOM05D005281 ORTHO05D006351 1.9e-11 73.6 99 45.5
A03p12060 Brassica napus HOM05D005281 ORTHO05D006351 1.9e-11 73.6 99 45.5
BolC3t13861H Brassica oleracea HOM05D005281 ORTHO05D006351 1.9e-11 73.6 99 45.5
BraA03t10518Z Brassica rapa HOM05D005281 ORTHO05D006351 1.9e-11 73.6 99 45.5
unitig_0.g1157 Utricularia gibba HOM05D005130 ORTHO05D006185 1.9e-11 73.6 96 43.8
Duzib168G1083 Durio zibethinus HOM05D005281 ORTHO05D006351 2.5e-11 73.2 94 46.8
C03p14150 Brassica napus HOM05D005281 ORTHO05D006351 3.2e-11 72.8 99 44.4
Lalb_Chr18g0050941 Lupinus albus HOM05D005281 ORTHO05D006351 7.2e-11 71.6 106 41.5
Peaxi162Scf00025g00089 Petunia axillaris HOM05D005281 ORTHO05D006351 9.4e-11 71.2 94 43.6
ECA247G0807 Erigeron canadensis HOM05D005281 ORTHO05D006351 1.2e-10 70.9 93 45.2
EL10Ac7g16168 Beta vulgaris HOM05D005281 ORTHO05D006351 2.1e-10 70.1 101 45.5
Eucgr.J01912 Eucalyptus grandis HOM05D005281 ORTHO05D006351 2.7e-10 69.7 97 43.3
CAN.G1213.5 Capsicum annuum HOM05D005281 ORTHO05D006351 4.7e-10 68.9 135 34.8
Haze_24325 Corylus avellana HOM05D005281 ORTHO05D006351 7.9e-10 68.2 94 42.6
HanXRQChr08g0229401 Helianthus annuus HOM05D005281 ORTHO05D006351 7.9e-10 68.2 108 39.8
Glyma.11G175400 Glycine max HOM05D005281 ORTHO05D006351 1.0e-09 67.8 91 42.9
Ah.15g100330 Amaranthus hybridus HOM05D005281 ORTHO05D013988 1.8e-09 67.0 89 44.9
MSTRG.6841 Avicennia marina HOM05D004205 ORTHO05D004977 2.3e-09 66.6 120 35.0
Dinv08307 Davidia involucrata HOM05D004205 ORTHO05D004977 2.3e-09 66.6 101 40.6
Dinv20162 Davidia involucrata HOM05D004205 ORTHO05D004977 2.3e-09 66.6 101 40.6
MBI14_g42908_MAGBIO Magnolia biondii HOM05D005281 ORTHO05D006351 2.3e-09 66.6 90 41.1
Manes.03G112100 Manihot esculenta HOM05D004205 ORTHO05D004977 5.1e-09 65.5 121 33.9
vmacro11853 Vaccinium macrocarpon HOM05D004205 ORTHO05D004977 5.1e-09 65.5 104 35.6
FvH4_3g20430 Fragaria vesca HOM05D004205 ORTHO05D004977 8.8e-09 64.7 126 38.1
FAN11G0436 Fragaria x ananassa HOM05D004205 ORTHO05D004977 8.8e-09 64.7 126 38.1
Hma1.2p1_0962F.1_g241910 Hydrangea macrophylla HOM05D005281 ORTHO05D006351 1.1e-08 64.3 94 45.7
Manes.03G112016 Manihot esculenta HOM05D004205 ORTHO05D004977 1.5e-08 63.9 121 33.1
RcHm_v2.0_Chr5g0034321 Rosa chinensis HOM05D004205 ORTHO05D004977 2.0e-08 63.5 131 37.4
Atru.chr2.2712 Acer truncatum HOM05D004205 ORTHO05D004977 2.6e-08 63.2 103 37.9
Gohir.A01G065100 Gossypium hirsutum HOM05D004205 ORTHO05D004977 4.4e-08 62.4 122 32.0
Gohir.D01G052500 Gossypium hirsutum HOM05D004205 ORTHO05D004977 4.4e-08 62.4 122 32.0
Gorai.002G072300 Gossypium raimondii HOM05D004205 ORTHO05D004977 4.4e-08 62.4 122 32.0
Dinv04315 Davidia involucrata HOM05D004205 ORTHO05D004977 7.4e-08 61.6 100 39.0
Cpa.g.sc80.45 Carica papaya HOM05D004205 ORTHO05D004977 9.7e-08 61.2 124 36.3
Nitab4.5_0001551g0010 Nicotiana tabacum HOM05D004205 ORTHO05D004977 9.7e-08 61.2 101 36.6
HPP92_005265 Vanilla planifolia HOM05D005281 ORTHO05D006351 9.7e-08 61.2 99 38.4
Nn1g06581 Nelumbo nucifera HOM05D004205 ORTHO05D004977 2.2e-07 60.1 98 33.7
TAR629G3452 Trochodendron aralioides HOM05D004205 ORTHO05D004977 2.2e-07 60.1 101 34.7
Lj1C846T14 Lonicera japonica HOM05D004205 ORTHO05D004977 2.8e-07 59.7 101 37.6
Medtr2g013430 Medicago truncatula HOM05D004205 ORTHO05D004977 2.8e-07 59.7 126 33.3
Os02g0639700 Oryza sativa ssp. japonica HOM05D004205 ORTHO05D004977 3.7e-07 59.3 117 30.8
Prupe.4G184000 Prunus persica HOM05D004205 ORTHO05D004977 3.7e-07 59.3 101 36.6
CiPaw.11G172400 Carya illinoinensis HOM05D004205 ORTHO05D004977 6.3e-07 58.5 101 34.7
MD00G1089400 Malus domestica HOM05D004205 ORTHO05D004977 6.3e-07 58.5 101 34.7
Oeu011680.1 Olea europaea HOM05D004205 ORTHO05D004977 6.3e-07 58.5 100 37.0
CAN.G162.69 Capsicum annuum HOM05D004205 ORTHO05D004977 8.2e-07 58.2 111 34.2
A01p38730 Brassica napus HOM05D004205 ORTHO05D004977 1.1e-06 57.8 119 29.4
Duzib213G0975 Durio zibethinus HOM05D004205 ORTHO05D004977 1.1e-06 57.8 103 35.0
PGSC0003DMG400012450 Solanum tuberosum HOM05D004205 ORTHO05D004977 1.4e-06 57.4 111 33.3
Zm00001eb119510 Zea mays HOM05D005281 ORTHO05D006351 1.4e-06 57.4 107 42.1
Actinidia05372 Actinidia chinensis HOM05D004205 ORTHO05D004977 1.8e-06 57.0 102 37.3
MBI17_g30523_MAGBIO Magnolia biondii HOM05D004205 ORTHO05D004977 1.8e-06 57.0 130 33.1
Peaxi162Scf00069g01334 Petunia axillaris HOM05D004205 ORTHO05D004977 1.8e-06 57.0 101 32.7
QL08p020409 Quercus lobata HOM05D004205 ORTHO05D004977 1.8e-06 57.0 102 34.3
Sopen07g031430 Solanum pennellii HOM05D004205 ORTHO05D004977 1.8e-06 57.0 111 33.3
CSS0032517 Camellia sinensis var. sinensis HOM05D004205 ORTHO05D004977 2.4e-06 56.6 103 32.0
Psat1g205560 Pisum sativum HOM05D004205 ORTHO05D004977 2.4e-06 56.6 120 35.8
COL.COLO4_09422 Corchorus olitorius HOM05D004205 ORTHO05D004977 3.1e-06 56.2 103 34.0
DCAR_013091 Daucus carota HOM05D004205 ORTHO05D004977 4.1e-06 55.8 93 38.7
Potri.001G401900 Populus trichocarpa HOM05D004205 ORTHO05D004977 4.1e-06 55.8 101 31.7
RcHm_v2.0_Chr7g0203081 Rosa chinensis HOM05D005281 ORTHO05D006351 4.1e-06 55.8 35 71.4
Solyc07g063240.4 Solanum lycopersicum HOM05D004205 ORTHO05D004977 4.1e-06 55.8 111 32.4
BcaC09g48505 Brassica carinata HOM05D004205 ORTHO05D004977 7.0e-06 55.1 118 28.8
C01p49060 Brassica napus HOM05D004205 ORTHO05D004977 7.0e-06 55.1 118 28.8
BolC1t04869H Brassica oleracea HOM05D004205 ORTHO05D004977 7.0e-06 55.1 118 28.8
BraA01t03912Z Brassica rapa HOM05D004205 ORTHO05D004977 7.0e-06 55.1 118 28.8
MELO3C007288.2 Cucumis melo HOM05D004205 ORTHO05D004977 7.0e-06 55.1 92 35.9
Nitab4.5_0003688g0010 Nicotiana tabacum HOM05D004205 ORTHO05D004977 7.0e-06 55.1 101 34.7
PGR004G2376 Punica granatum HOM05D004205 ORTHO05D004977 9.1e-06 54.7 99 34.3
SEGI_19872 Sequoiadendron giganteum HOM05D005281 ORTHO05D006351 9.1e-06 54.7 96 33.3


User provided reference genes

Program Settings