Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G3061 Papaver somniferum HOM05D005524 ORTHO05D005392 2.5e-24 114.8 63 100.0
Potri.006G056200 Populus trichocarpa HOM05D005524 ORTHO05D005392 3.7e-12 74.3 63 61.9
Potri.016G052001 Populus trichocarpa HOM05D005524 ORTHO05D005392 5.3e-11 70.5 63 60.3
AT3G57690 Arabidopsis thaliana HOM05D005524 ORTHO05D005392 5.9e-10 67.0 63 60.3
Dinv18091 Davidia involucrata HOM05D005524 ORTHO05D005392 5.9e-10 67.0 63 61.9
BcaB02g07583 Brassica carinata HOM05D005524 ORTHO05D005392 1.0e-09 66.2 63 58.7
CARHR167870 Cardamine hirsuta HOM05D005524 ORTHO05D005392 1.0e-09 66.2 63 58.7
BcaB02g08300 Brassica carinata HOM05D005524 ORTHO05D005392 1.7e-09 65.5 63 57.1
BcaB02g08302 Brassica carinata HOM05D005524 ORTHO05D005392 1.7e-09 65.5 63 57.1
A07p23640 Brassica napus HOM05D005524 ORTHO05D005392 1.7e-09 65.5 63 58.7
BraA07t30018Z Brassica rapa HOM05D005524 ORTHO05D005392 1.7e-09 65.5 63 58.7
BcaC08g44863 Brassica carinata HOM05D005524 ORTHO05D005392 2.2e-09 65.1 63 58.7
BolC6t37629H Brassica oleracea HOM05D005524 ORTHO05D005392 2.2e-09 65.1 63 58.7
Potri.001G268800 Populus trichocarpa HOM05D005524 ORTHO05D005392 2.2e-09 65.1 63 55.6
BcaC02g09954 Brassica carinata HOM05D005524 ORTHO05D005392 3.8e-09 64.3 63 57.1
A04p02980 Brassica napus HOM05D005524 ORTHO05D005392 3.8e-09 64.3 63 57.1
C04p34740 Brassica napus HOM05D005524 ORTHO05D005392 3.8e-09 64.3 63 57.1
C06p24770 Brassica napus HOM05D005524 ORTHO05D005392 3.8e-09 64.3 63 58.7
BolC4t25028H Brassica oleracea HOM05D005524 ORTHO05D005392 3.8e-09 64.3 63 57.1
BraA04t16021Z Brassica rapa HOM05D005524 ORTHO05D005392 3.8e-09 64.3 63 57.1
ClCG10G012450 Citrullus lanatus HOM05D005524 ORTHO05D005392 6.5e-09 63.5 63 54.0
Duzib093G2098 Durio zibethinus HOM05D005524 ORTHO05D005392 6.5e-09 63.5 64 60.9
BcaC07g40352 Brassica carinata HOM05D005524 ORTHO05D005392 8.5e-09 63.2 63 55.6
C08p33270 Brassica napus HOM05D005524 ORTHO05D005392 8.5e-09 63.2 63 55.6
BolC8t50929H Brassica oleracea HOM05D005524 ORTHO05D005392 8.5e-09 63.2 63 55.6
A09p50540 Brassica napus HOM05D005524 ORTHO05D005392 1.1e-08 62.8 63 55.6
Duzib106G1083 Durio zibethinus HOM05D005524 ORTHO05D005392 1.4e-08 62.4 64 59.4
Atru.chr1.974 Acer truncatum HOM05D005524 ORTHO05D005392 1.9e-08 62.0 68 57.4
Aa31LG10G12450 Aethionema arabicum HOM05D005524 ORTHO05D005392 1.9e-08 62.0 63 57.1
AL5G39310 Arabidopsis lyrata HOM05D005524 ORTHO05D005392 1.9e-08 62.0 64 57.8
CsaV3_3G032220 Cucumis sativus L. HOM05D005524 ORTHO05D005392 1.9e-08 62.0 61 55.7
Sp5g04940 Schrenkiella parvula HOM05D005524 ORTHO05D005392 1.9e-08 62.0 64 59.4
Thecc.01G412500 Theobroma cacao HOM05D005524 ORTHO05D005392 2.5e-08 61.6 63 57.1
BraA09t40508Z Brassica rapa HOM05D005524 ORTHO05D005392 3.2e-08 61.2 63 54.0
Potri.009G063600 Populus trichocarpa HOM05D005524 ORTHO05D005392 3.2e-08 61.2 63 52.4
CSS0022867 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 4.2e-08 60.8 63 57.1
Atru.chr1.1006 Acer truncatum HOM05D005524 ORTHO05D005392 5.5e-08 60.5 68 55.9
CSS0022323 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 5.5e-08 60.5 63 60.3
Duzib128G1940 Durio zibethinus HOM05D005524 ORTHO05D005392 5.5e-08 60.5 66 56.1
Eucgr.A02403 Eucalyptus grandis HOM05D005524 ORTHO05D005392 5.5e-08 60.5 63 57.1
Sabra16G0164700 Salix brachista HOM05D005524 ORTHO05D005392 5.5e-08 60.5 63 54.0
TWI09G0988 Tripterygium wilfordii HOM05D005524 ORTHO05D005392 5.5e-08 60.5 63 55.6
BcaC07g40149 Brassica carinata HOM05D005524 ORTHO05D005392 7.2e-08 60.1 63 57.1
CSS0036301 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 9.4e-08 59.7 63 55.6
TWI73G1008 Tripterygium wilfordii HOM05D005524 ORTHO05D005392 1.2e-07 59.3 63 55.6
CSS0011241 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 2.7e-07 58.2 63 55.6
MELO3C009064.2 Cucumis melo HOM05D019173 ORTHO05D005392 3.6e-07 57.8 63 44.4
Thecc.05G164300 Theobroma cacao HOM05D005524 ORTHO05D005392 3.6e-07 57.8 66 60.6
CSS0030443 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 4.6e-07 57.4 63 57.1
Carub.0004s2422 Capsella rubella HOM05D005524 ORTHO05D005392 4.6e-07 57.4 64 57.8
CiPaw.13G003600 Carya illinoinensis HOM05D005524 ORTHO05D005392 4.6e-07 57.4 66 56.1
SHI24452 Sapria himalayana HOM05D005524 ORTHO05D005392 6.1e-07 57.0 61 52.5
Sed0007200 Sechium edule HOM05D005524 ORTHO05D005392 6.1e-07 57.0 65 52.3
Eucgr.H02490 Eucalyptus grandis HOM05D005524 ORTHO05D005392 7.9e-07 56.6 63 55.6
A03p23470 Brassica napus HOM05D005524 ORTHO05D005392 1.0e-06 56.2 64 57.8
BraA03t11563Z Brassica rapa HOM05D005524 ORTHO05D005392 1.0e-06 56.2 64 57.8
Sed0004967 Sechium edule HOM05D019173 ORTHO05D005392 1.0e-06 56.2 63 44.4
Phvul.001G137100 Phaseolus vulgaris HOM05D005524 ORTHO05D005392 1.4e-06 55.8 60 53.3
Sed0016248 Sechium edule HOM05D005524 ORTHO05D005392 1.4e-06 55.8 65 52.3
Sed0018871 Sechium edule HOM05D019173 ORTHO05D005392 1.4e-06 55.8 63 42.9
BcaC02g07275 Brassica carinata HOM05D005524 ORTHO05D005392 1.8e-06 55.5 64 57.8
A04p31910 Brassica napus HOM05D005524 ORTHO05D005392 1.8e-06 55.5 64 57.8
C04p69380 Brassica napus HOM05D005524 ORTHO05D005392 1.8e-06 55.5 64 57.8
BolC4t28440H Brassica oleracea HOM05D005524 ORTHO05D005392 1.8e-06 55.5 64 57.8
BraA04t18649Z Brassica rapa HOM05D005524 ORTHO05D005392 1.8e-06 55.5 64 57.8
CARHR137000 Cardamine hirsuta HOM05D005524 ORTHO05D005392 1.8e-06 55.5 64 54.7
Manes.07G004601 Manihot esculenta HOM05D005524 ORTHO05D005392 1.8e-06 55.5 64 53.1
AT2G41905 Arabidopsis thaliana HOM05D005524 ORTHO05D005392 2.3e-06 55.1 64 56.2
BcaB01g03426 Brassica carinata HOM05D005524 ORTHO05D005392 2.3e-06 55.1 64 56.2
CSS0036543 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 2.3e-06 55.1 63 52.4
Sed0004405 Sechium edule HOM05D019173 ORTHO05D005392 2.3e-06 55.1 63 44.4
Haze_03228 Corylus avellana HOM05D000430 ORTHO05D000305 3.0e-06 54.7 68 52.9
Sp4g24180 Schrenkiella parvula HOM05D005524 ORTHO05D005392 3.0e-06 54.7 64 56.2
AL4G40250 Arabidopsis lyrata HOM05D005524 ORTHO05D005392 3.9e-06 54.3 64 54.7
Ca_05436_v3 Cicer arietinum L. HOM05D005524 ORTHO05D005392 3.9e-06 54.3 60 53.3
CsaV3_4G031450 Cucumis sativus L. HOM05D019173 ORTHO05D005392 3.9e-06 54.3 57 47.4
MBI04_g13621_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.9e-06 54.3 65 55.4
BcaNung07196 Brassica carinata HOM05D005524 ORTHO05D005392 5.1e-06 53.9 64 56.2
Hma1.2p1_0293F.1_g116270 Hydrangea macrophylla HOM05D005524 ORTHO05D005392 5.1e-06 53.9 68 51.5
BcaB06g29217 Brassica carinata HOM05D005524 ORTHO05D005392 6.7e-06 53.5 64 54.7
Sed0014034 Sechium edule HOM05D005524 ORTHO05D005392 6.7e-06 53.5 65 53.8
ClCG09G004270 Citrullus lanatus HOM05D005524 ORTHO05D005392 8.8e-06 53.1 65 50.8


User provided reference genes

Program Settings