Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G2857 Papaver somniferum HOM05D006639 ORTHO05D008339 3.2e-71 272.3 221 100.0
PSO339G4282 Papaver somniferum HOM05D006639 ORTHO05D008339 1.3e-64 250.4 221 93.7
TAR636G3315 Trochodendron aralioides HOM05D006639 ORTHO05D008339 4.5e-41 172.2 138 70.3
Nn6g34885 Nelumbo nucifera HOM05D006639 ORTHO05D008339 7.3e-39 164.9 133 70.7
PGR119G2179 Punica granatum HOM05D006639 ORTHO05D008339 2.3e-37 159.8 119 74.8
GSVIVG01036120001 Vitis vinifera HOM05D006639 ORTHO05D008339 2.3e-37 159.8 131 66.4
Sc12g0004540 Simmondsia chinensis HOM05D006639 ORTHO05D008339 8.9e-37 157.9 130 66.2
Thecc.09G282700 Theobroma cacao HOM05D006639 ORTHO05D008339 8.9e-37 157.9 118 70.3
Hund18759 Selenicereus undatus HOM05D006639 ORTHO05D008339 1.2e-36 157.5 117 70.9
Ah.15g095860 Amaranthus hybridus HOM05D006639 ORTHO05D008339 2.6e-36 156.4 121 67.8
Gorai.009G085200 Gossypium raimondii HOM05D006639 ORTHO05D008339 2.6e-36 156.4 125 70.4
MBI17_g08336_MAGBIO Magnolia biondii HOM05D006639 ORTHO05D008339 5.7e-36 155.2 123 68.3
Manes.11G162100 Manihot esculenta HOM05D006639 ORTHO05D008339 7.5e-36 154.8 104 77.9
Rhsim13G0112100 Rhododendron simsii HOM05D006639 ORTHO05D008339 7.5e-36 154.8 125 68.0
EL10Ac7g15828 Beta vulgaris HOM05D006639 ORTHO05D008339 2.2e-35 153.3 121 67.8
Gohir.D05G083500 Gossypium hirsutum HOM05D006639 ORTHO05D008339 2.2e-35 153.3 123 70.7
Aqoxy4G02766 Aquilegia oxysepala HOM05D006639 ORTHO05D008339 4.9e-35 152.1 122 68.0
Lalb_Chr19g0136451 Lupinus albus HOM05D006639 ORTHO05D008339 8.3e-35 151.4 130 65.4
Duzib168G1184 Durio zibethinus HOM05D006639 ORTHO05D008339 1.1e-34 151.0 115 72.2
CSS0034800 Camellia sinensis var. sinensis HOM05D006639 ORTHO05D008339 1.8e-34 150.2 131 65.6
Potri.009G163500 Populus trichocarpa HOM05D006639 ORTHO05D008339 1.8e-34 150.2 131 64.1
TPR.G17231 Trifolium pratense HOM05D006639 ORTHO05D008339 4.1e-34 149.1 123 65.0
arahy.Tifrunner.gnm1.ann1.I7PXCJ Arachis hypogaea HOM05D006639 ORTHO05D008339 5.4e-34 148.7 125 64.0
Ca_19409_v3 Cicer arietinum L. HOM05D006639 ORTHO05D008339 5.4e-34 148.7 122 65.6
arahy.Tifrunner.gnm1.ann1.UG6V14 Arachis hypogaea HOM05D006639 ORTHO05D008339 7.0e-34 148.3 125 63.2
Lj3g0014332 Lotus japonicus HOM05D006639 ORTHO05D008339 7.0e-34 148.3 112 67.0
Eucgr.J00499 Eucalyptus grandis HOM05D006639 ORTHO05D008339 9.2e-34 147.9 134 66.4
Psat7g187880 Pisum sativum HOM05D006639 ORTHO05D008339 9.2e-34 147.9 115 68.7
CsaV3_6G038390 Cucumis sativus L. HOM05D006639 ORTHO05D008339 1.2e-33 147.5 122 65.6
BraA07t29539Z Brassica rapa HOM05D006639 ORTHO05D008339 3.5e-33 146.0 102 73.5
Cc01_g09080 Coffea canephora HOM05D006639 ORTHO05D008339 3.5e-33 146.0 130 60.0
Gohir.A05G080500 Gossypium hirsutum HOM05D006639 ORTHO05D008339 3.5e-33 146.0 109 72.5
Ciclev10029525m.g Citrus clementina HOM05D006639 ORTHO05D008339 4.6e-33 145.6 121 63.6
Oeu022427.1 Olea europaea HOM05D006639 ORTHO05D008339 5.9e-33 145.2 128 62.5
QL01p012190 Quercus lobata HOM05D006639 ORTHO05D008339 5.9e-33 145.2 102 72.5
Sabra09G0127600 Salix brachista HOM05D006639 ORTHO05D008339 5.9e-33 145.2 134 61.2
HanXRQChr14g0438101 Helianthus annuus HOM05D006639 ORTHO05D008339 7.8e-33 144.8 113 69.0
AT2G27470 Arabidopsis thaliana HOM05D006639 ORTHO05D008339 1.0e-32 144.4 105 71.4
A07p18230 Brassica napus HOM05D006639 ORTHO05D008339 1.0e-32 144.4 102 72.5
MELO3C014503.2 Cucumis melo HOM05D006639 ORTHO05D008339 1.0e-32 144.4 124 62.9
Medtr4g052950 Medicago truncatula HOM05D006639 ORTHO05D008339 1.3e-32 144.1 128 63.3
FAN25G3607 Fragaria x ananassa HOM05D006639 ORTHO05D008339 1.7e-32 143.7 120 65.0
CANSAT56G0593 Cannabis sativa HOM05D006639 ORTHO05D008339 3.0e-32 142.9 124 62.1
CANSAT56G1587 Cannabis sativa HOM05D006639 ORTHO05D008339 3.0e-32 142.9 124 62.1
DCAR_010346 Daucus carota HOM05D006639 ORTHO05D008339 3.0e-32 142.9 122 62.3
Prupe.6G130500 Prunus persica HOM05D006639 ORTHO05D008339 3.0e-32 142.9 149 61.1
Aa31LG5G8810 Aethionema arabicum HOM05D006639 ORTHO05D008339 3.9e-32 142.5 134 61.9
BcaB02g10091 Brassica carinata HOM05D006639 ORTHO05D008339 6.6e-32 141.7 98 73.5
BcaC02g10878 Brassica carinata HOM05D006639 ORTHO05D008339 6.6e-32 141.7 97 74.2
C04p24130 Brassica napus HOM05D006639 ORTHO05D008339 6.6e-32 141.7 97 74.2
BolC4t23910H Brassica oleracea HOM05D006639 ORTHO05D008339 6.6e-32 141.7 97 74.2
Glyma.11G183100 Glycine max HOM05D006639 ORTHO05D008339 6.6e-32 141.7 118 63.6
AL4G21460 Arabidopsis lyrata HOM05D006639 ORTHO05D008339 1.5e-31 140.6 105 68.6
FAN16G2085 Fragaria x ananassa HOM05D006639 ORTHO05D008339 1.5e-31 140.6 115 65.2
THA.LOC104826426 Tarenaya hassleriana HOM05D006639 ORTHO05D008339 1.9e-31 140.2 99 71.7
MSTRG.18760 Avicennia marina HOM05D006639 ORTHO05D008339 2.5e-31 139.8 128 60.2
Nitab4.5_0000755g0110 Nicotiana tabacum HOM05D006639 ORTHO05D008339 3.3e-31 139.4 121 62.8
Sp4g10260 Schrenkiella parvula HOM05D006639 ORTHO05D008339 3.3e-31 139.4 98 71.4
vmacro03320 Vaccinium macrocarpon HOM05D006639 ORTHO05D008339 3.3e-31 139.4 115 67.0
FvH4_3g24950 Fragaria vesca HOM05D006639 ORTHO05D008339 4.3e-31 139.0 112 66.1
RcHm_v2.0_Chr5g0044741 Rosa chinensis HOM05D006639 ORTHO05D008339 4.3e-31 139.0 102 69.6
TWI31G0153 Tripterygium wilfordii HOM05D006639 ORTHO05D008339 4.3e-31 139.0 121 66.1
FAN21G1301 Fragaria x ananassa HOM05D006639 ORTHO05D008339 5.6e-31 138.7 113 64.6
Nitab4.5_0010969g0010 Nicotiana tabacum HOM05D006639 ORTHO05D008339 5.6e-31 138.7 115 63.5
Carub.0004s0810 Capsella rubella HOM05D006639 ORTHO05D008339 7.3e-31 138.3 105 68.6
Peaxi162Scf00040g00018 Petunia axillaris HOM05D006639 ORTHO05D008339 7.3e-31 138.3 123 61.8
BolC3t15529H Brassica oleracea HOM05D006639 ORTHO05D008339 9.5e-31 137.9 101 71.3
Solyc11g068480.2 Solanum lycopersicum HOM05D006639 ORTHO05D008339 9.5e-31 137.9 115 64.3
Sopen11g027190 Solanum pennellii HOM05D006639 ORTHO05D008339 9.5e-31 137.9 113 65.5
CDE08G1389 Ceratophyllum demersum HOM05D006639 ORTHO05D008339 1.2e-30 137.5 121 63.6
HPP92_003216 Vanilla planifolia HOM05D006639 ORTHO05D008339 1.2e-30 137.5 147 53.1
ClCG02G022260 Citrullus lanatus HOM05D006639 ORTHO05D008339 1.6e-30 137.1 126 61.1
Phvul.011G094600 Phaseolus vulgaris HOM05D006639 ORTHO05D008339 2.8e-30 136.3 122 59.0
VMungo1127G0544 Vigna mungo HOM05D006639 ORTHO05D008339 3.6e-30 136.0 122 59.8
PGSC0003DMG400026357 Solanum tuberosum HOM05D006639 ORTHO05D008339 4.7e-30 135.6 113 63.7
BcaC01g04942 Brassica carinata HOM05D006639 ORTHO05D008339 8.0e-30 134.8 101 70.3
Lsat_1_v5_gn_2_59441 Lactuca sativa HOM05D006639 ORTHO05D008339 1.0e-29 134.4 107 66.4
Oeu031474.1 Olea europaea HOM05D006639 ORTHO05D008339 1.0e-29 134.4 122 61.5
CARHR120120 Cardamine hirsuta HOM05D006639 ORTHO05D008339 3.1e-29 132.9 130 60.0
Os09g0568200 Oryza sativa ssp. japonica HOM05D006639 ORTHO05D008339 1.2e-28 131.0 127 57.5
C03p31860 Brassica napus HOM05D006639 ORTHO05D008339 1.5e-28 130.6 123 61.0
ATR0776G083 Amborella trichopoda HOM05D006639 ORTHO05D008339 2.0e-28 130.2 118 61.0
Migut.D02442 Erythranthe guttata HOM05D006639 ORTHO05D008339 2.0e-28 130.2 133 55.6
Glyma.12G089400 Glycine max HOM05D006639 ORTHO05D008339 2.6e-28 129.8 112 60.7
CAN.G1524.3 Capsicum annuum HOM05D006639 ORTHO05D008339 3.4e-28 129.4 112 63.4
SGA_v2.0_scaffold22G09859 Striga asiatica HOM05D006639 ORTHO05D008339 3.4e-28 129.4 133 56.4
Zm00001eb308280 Zea mays HOM05D006639 ORTHO05D008339 7.5e-28 128.3 116 57.8
ECA238G3612 Erigeron canadensis HOM05D006639 ORTHO05D008339 9.8e-28 127.9 102 66.7
CiPaw.14G099800 Carya illinoinensis HOM05D006639 ORTHO05D008339 3.7e-27 125.9 88 71.6
MD11G1164600 Malus domestica HOM05D006639 ORTHO05D008339 6.4e-27 125.2 115 62.6
Cfa010012 Carpinus fangiana HOM05D006639 ORTHO05D008339 1.1e-26 124.4 107 63.6
unitig_37.g12892 Utricularia gibba HOM05D006639 ORTHO05D008339 1.9e-26 123.6 126 54.8
Haze_23370 Corylus avellana HOM05D006639 ORTHO05D008339 7.0e-26 121.7 120 59.2
Thhalv10017865m.g Eutrema salsugineum HOM05D006639 ORTHO05D008339 9.2e-26 121.3 89 69.7
Sed0014981 Sechium edule HOM05D006639 ORTHO05D008339 9.2e-26 121.3 92 67.4
Lj2A946T24 Lonicera japonica HOM05D006639 ORTHO05D008339 1.2e-25 120.9 101 62.4
BcaB01g03073 Brassica carinata HOM05D006639 ORTHO05D008339 2.0e-25 120.2 90 68.9
Mapoly0105s0006 Marchantia polymorpha HOM05D006639 ORTHO05D008339 2.0e-25 120.2 122 53.3
Lj2A964T5 Lonicera japonica HOM05D006639 ORTHO05D008339 3.5e-25 119.4 101 61.4
FAN11G3713 Fragaria x ananassa HOM05D006639 ORTHO05D008339 1.3e-24 117.5 97 64.9
SEGI_32267 Sequoiadendron giganteum HOM05D006639 ORTHO05D008339 5.0e-24 115.5 108 54.6
AagrBONN_evm.TU.Sc2ySwM_362.1778 Anthoceros agrestis HOM05D006639 ORTHO05D008339 1.1e-23 114.4 130 49.2
SMO340G0007 Selaginella moellendorffii HOM05D006639 ORTHO05D008339 1.2e-22 110.9 109 55.0
Atru.BG.107.p Acer truncatum HOM05D006639 ORTHO05D008339 2.8e-22 109.8 83 65.1
DCAR_006164 Daucus carota HOM05D006639 ORTHO05D008339 1.8e-21 107.1 88 64.8
Pp3c26_8280 Physcomitrium patens HOM05D006639 ORTHO05D008339 1.2e-20 104.4 117 48.7
Atru.chr3.3238 Acer truncatum HOM05D006639 ORTHO05D008339 5.8e-20 102.1 103 55.3
ECA238G0189 Erigeron canadensis HOM05D006639 ORTHO05D008339 4.9e-19 99.0 120 52.5
MCO15G204 Micromonas commoda HOM05D006639 ORTHO05D008339 4.9e-19 99.0 113 46.9
PRCOL_00006285 Prasinoderma coloniale HOM05D006639 ORTHO05D008339 1.2e-17 94.4 116 44.0
Cre07.g341800 Chlamydomonas reinhardtii HOM05D006639 ORTHO05D008339 1.8e-13 80.5 117 36.8
COL.COLO4_19857 Corchorus olitorius HOM05D006639 ORTHO05D008339 9.9e-12 74.7 55 69.1
Nn1g05220 Nelumbo nucifera HOM05D006639 ORTHO05D008339 1.7e-08 63.9 59 59.3
Nn1g05039 Nelumbo nucifera HOM05D006639 ORTHO05D008339 3.0e-08 63.2 58 58.6
Nn053s41924 Nelumbo nucifera HOM05D006639 ORTHO05D008339 3.9e-08 62.8 58 58.6
Nn1g05215 Nelumbo nucifera HOM05D006639 ORTHO05D008339 3.9e-08 62.8 58 58.6
Nn1g05216 Nelumbo nucifera HOM05D006639 ORTHO05D008339 3.9e-08 62.8 58 58.6
Lsat_1_v5_gn_6_29620 Lactuca sativa HOM05D000297 ORTHO05D000193 8.6e-08 61.6 90 36.7
HanXRQChr16g0505691 Helianthus annuus HOM05D003169 ORTHO05D003700 2.5e-07 60.1 61 57.4
CANSAT11G2562 Cannabis sativa HOM05D000297 ORTHO05D000193 3.3e-07 59.7 105 35.2
Duzib170G1080 Durio zibethinus HOM05D000297 ORTHO05D000193 5.6e-07 58.9 104 36.5
Manes.15G060400 Manihot esculenta HOM05D000297 ORTHO05D000193 1.2e-06 57.8 104 35.6
arahy.Tifrunner.gnm1.ann1.8XPX7R Arachis hypogaea HOM05D000297 ORTHO05D000193 1.6e-06 57.4 104 36.5
arahy.Tifrunner.gnm1.ann1.BTE5MM Arachis hypogaea HOM05D000297 ORTHO05D000193 1.6e-06 57.4 104 36.5
AUR62009752 Chenopodium quinoa HOM05D006639 ORTHO05D008339 1.6e-06 57.4 48 56.2
Ca_22136_v3 Cicer arietinum L. HOM05D000297 ORTHO05D000193 1.6e-06 57.4 104 36.5
Ca_30467_v3 Cicer arietinum L. HOM05D000297 ORTHO05D000193 1.6e-06 57.4 104 36.5
Gohir.A13G133200 Gossypium hirsutum HOM05D000297 ORTHO05D000193 1.6e-06 57.4 104 35.6
Gohir.D13G136500 Gossypium hirsutum HOM05D000297 ORTHO05D000193 1.6e-06 57.4 104 35.6
Gorai.013G153100 Gossypium raimondii HOM05D000297 ORTHO05D000193 1.6e-06 57.4 104 35.6
Lalb_Chr10g0107411 Lupinus albus HOM05D000297 ORTHO05D000193 1.6e-06 57.4 103 36.9
Thecc.07G014500 Theobroma cacao HOM05D000297 ORTHO05D000193 1.6e-06 57.4 104 35.6
VMungo0540G1371 Vigna mungo HOM05D000297 ORTHO05D000193 2.1e-06 57.0 96 35.4
FvH4_3g29360 Fragaria vesca HOM05D000297 ORTHO05D000193 2.8e-06 56.6 104 33.7
FAN11G1502 Fragaria x ananassa HOM05D000297 ORTHO05D000193 2.8e-06 56.6 104 33.7
FAN21G0154 Fragaria x ananassa HOM05D000297 ORTHO05D000193 2.8e-06 56.6 104 33.7
FAN25G0374 Fragaria x ananassa HOM05D000297 ORTHO05D000193 2.8e-06 56.6 104 33.7
MD11G1200400 Malus domestica HOM05D000297 ORTHO05D000193 2.8e-06 56.6 103 34.0
RcHm_v2.0_Chr5g0053731 Rosa chinensis HOM05D000297 ORTHO05D000193 2.8e-06 56.6 103 34.0
SMO367G0294 Selaginella moellendorffii HOM05D000297 ORTHO05D000193 2.8e-06 56.6 103 35.9
FAN16G1399 Fragaria x ananassa HOM05D000297 ORTHO05D000193 3.6e-06 56.2 104 32.7
Glyma.08G329300 Glycine max HOM05D000297 ORTHO05D000193 3.6e-06 56.2 104 35.6
Glyma.10G048900 Glycine max HOM05D000297 ORTHO05D000193 3.6e-06 56.2 117 34.2
Gohir.A01G091200 Gossypium hirsutum HOM05D000297 ORTHO05D000193 3.6e-06 56.2 104 35.6
Gohir.D01G076520 Gossypium hirsutum HOM05D000297 ORTHO05D000193 3.6e-06 56.2 104 35.6
Gorai.002G099900 Gossypium raimondii HOM05D000297 ORTHO05D000193 3.6e-06 56.2 104 35.6
Phvul.006G056950 Phaseolus vulgaris HOM05D000297 ORTHO05D000193 3.6e-06 56.2 104 35.6
VMungo0540G2410 Vigna mungo HOM05D000297 ORTHO05D000193 3.6e-06 56.2 104 35.6
BcaC05g28922 Brassica carinata HOM05D000297 ORTHO05D000193 4.7e-06 55.8 98 34.7
A05p33500 Brassica napus HOM05D000297 ORTHO05D000193 4.7e-06 55.8 98 34.7
C05p50490 Brassica napus HOM05D000297 ORTHO05D000193 4.7e-06 55.8 98 34.7
BolC5t33795H Brassica oleracea HOM05D000297 ORTHO05D000193 4.7e-06 55.8 98 34.7
BraA05t22172Z Brassica rapa HOM05D000297 ORTHO05D000193 4.7e-06 55.8 98 34.7
CANSAT56G4001 Cannabis sativa HOM05D000297 ORTHO05D000193 4.7e-06 55.8 98 33.7
Ca_06394_v3 Cicer arietinum L. HOM05D000297 ORTHO05D000193 4.7e-06 55.8 103 34.0
COL.COLO4_09824 Corchorus olitorius HOM05D000297 ORTHO05D000193 4.7e-06 55.8 103 35.0
Eucgr.F02051 Eucalyptus grandis HOM05D000297 ORTHO05D000193 4.7e-06 55.8 97 35.1
HanXRQChr14g0445301 Helianthus annuus HOM05D000297 ORTHO05D000193 4.7e-06 55.8 88 33.0
Mapoly0214s0002 Marchantia polymorpha HOM05D000297 ORTHO05D000193 4.7e-06 55.8 100 35.0
Medtr3g058980 Medicago truncatula HOM05D000297 ORTHO05D000193 4.7e-06 55.8 104 35.6
Prupe.4G242700 Prunus persica HOM05D000297 ORTHO05D000193 4.7e-06 55.8 102 34.3
PGR004G1997 Punica granatum HOM05D000297 ORTHO05D000193 4.7e-06 55.8 102 34.3
TPR.G24145 Trifolium pratense HOM05D000297 ORTHO05D000193 4.7e-06 55.8 104 35.6
CiPaw.11G203400 Carya illinoinensis HOM05D000297 ORTHO05D000193 6.2e-06 55.5 104 34.6
Haze_09818 Corylus avellana HOM05D000297 ORTHO05D000193 6.2e-06 55.5 103 35.0
Eucgr.L00153 Eucalyptus grandis HOM05D000297 ORTHO05D000193 6.2e-06 55.5 113 33.6
Lj6g0000035 Lotus japonicus HOM05D000297 ORTHO05D000193 6.2e-06 55.5 104 34.6
MD03G1183400 Malus domestica HOM05D000297 ORTHO05D000193 6.2e-06 55.5 103 33.0
Medtr5g095740 Medicago truncatula HOM05D000297 ORTHO05D000193 6.2e-06 55.5 103 35.9
Phvul.008G278900 Phaseolus vulgaris HOM05D000297 ORTHO05D000193 6.2e-06 55.5 104 35.6
Pp3c9_14800 Physcomitrium patens HOM05D000297 ORTHO05D000193 6.2e-06 55.5 120 33.3
Psat2g007480 Pisum sativum HOM05D000297 ORTHO05D000193 6.2e-06 55.5 103 35.9
Psat5g168880 Pisum sativum HOM05D000297 ORTHO05D000193 6.2e-06 55.5 106 34.9
TPR.G8618 Trifolium pratense HOM05D000297 ORTHO05D000193 6.2e-06 55.5 103 35.9
VMungo0647G2122 Vigna mungo HOM05D000297 ORTHO05D000193 6.2e-06 55.5 104 35.6
Cfa020197 Carpinus fangiana HOM05D000297 ORTHO05D000193 8.1e-06 55.1 103 35.0
CiPaw.10G081500 Carya illinoinensis HOM05D000297 ORTHO05D000193 8.1e-06 55.1 88 36.4
CDE06G0905 Ceratophyllum demersum HOM05D000297 ORTHO05D000193 8.1e-06 55.1 88 35.2
ECA236G2090 Erigeron canadensis HOM05D000297 ORTHO05D000193 8.1e-06 55.1 116 33.6
Migut.H01757 Erythranthe guttata HOM05D000297 ORTHO05D000193 8.1e-06 55.1 105 34.3
MBI19_g14896_MAGBIO Magnolia biondii HOM05D000297 ORTHO05D000193 8.1e-06 55.1 96 36.5
QL08p004215 Quercus lobata HOM05D000297 ORTHO05D000193 8.1e-06 55.1 103 35.0
Solyc07g065500.2 Solanum lycopersicum HOM05D000297 ORTHO05D000193 8.1e-06 55.1 103 35.9
Sopen07g033710 Solanum pennellii HOM05D000297 ORTHO05D000193 8.1e-06 55.1 103 35.9


User provided reference genes

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