Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G2670 Papaver somniferum HOM05D007104 ORTHO05D008851 0.0e+00 1350.9 900 100.0
PSO339G1446 Papaver somniferum HOM05D007104 ORTHO05D008851 0.0e+00 1213.7 874 94.4
TAR633G1446 Trochodendron aralioides HOM05D007104 ORTHO05D008851 6.7e-208 728.4 879 62.5
Nn2g12960 Nelumbo nucifera HOM05D007104 ORTHO05D008851 6.5e-187 658.7 872 57.8
GSVIVG01025541001 Vitis vinifera HOM05D007104 ORTHO05D008851 1.8e-176 624.0 817 59.4
Duzib128G0648 Durio zibethinus HOM05D007104 ORTHO05D008851 3.0e-176 623.2 800 58.4
Thecc.05G052200 Theobroma cacao HOM05D007104 ORTHO05D008851 4.0e-176 622.9 799 59.4
Hma1.2p1_0111F.1_g053700 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 2.2e-171 607.1 819 57.5
Gohir.A04G077100 Gossypium hirsutum HOM05D007104 ORTHO05D008851 1.4e-168 597.8 800 57.4
Gorai.009G420800 Gossypium raimondii HOM05D007104 ORTHO05D008851 1.4e-168 597.8 797 57.6
Manes.08G001800 Manihot esculenta HOM05D007104 ORTHO05D008851 5.7e-167 592.4 870 54.6
Prupe.6G243100 Prunus persica HOM05D007104 ORTHO05D008851 1.7e-163 580.9 881 60.5
Dinv35696 Davidia involucrata HOM05D007104 ORTHO05D008851 8.0e-161 572.0 869 55.1
CiPaw.09G181900 Carya illinoinensis HOM05D007104 ORTHO05D008851 1.4e-160 571.2 877 54.5
MD12G1126500 Malus domestica HOM05D007104 ORTHO05D008851 1.8e-160 570.9 810 55.8
RcHm_v2.0_Chr3g0468421 Rosa chinensis HOM05D007104 ORTHO05D008851 1.8e-160 570.9 810 55.9
FvH4_6g15120 Fragaria vesca HOM05D007104 ORTHO05D008851 9.8e-159 565.1 863 55.5
Sed0027238 Sechium edule HOM05D007104 ORTHO05D008851 1.7e-158 564.3 877 55.1
Ciclev10011055m.g Citrus clementina HOM05D007104 ORTHO05D008851 3.7e-158 563.1 807 55.6
FAN09G1206 Fragaria x ananassa HOM05D007104 ORTHO05D008851 1.1e-157 561.6 864 59.3
FAN14G4814 Fragaria x ananassa HOM05D007104 ORTHO05D008851 1.4e-157 561.2 863 53.4
FAN05G0960 Fragaria x ananassa HOM05D007104 ORTHO05D008851 2.4e-157 560.5 865 53.6
Haze_20670 Corylus avellana HOM05D007104 ORTHO05D008851 3.5e-156 556.6 822 55.4
Potri.006G132700 Populus trichocarpa HOM05D007104 ORTHO05D008851 5.9e-156 555.8 885 51.9
EL10Ac7g17325 Beta vulgaris HOM05D007104 ORTHO05D008851 1.7e-155 554.3 801 49.4
CANSAT80G1630 Cannabis sativa HOM05D007104 ORTHO05D008851 6.6e-155 552.4 792 61.7
Peaxi162Scf00005g05111 Petunia axillaris HOM05D007104 ORTHO05D008851 1.5e-154 551.2 814 55.8
MSTRG.19128 Avicennia marina HOM05D007104 ORTHO05D008851 1.1e-152 545.0 807 53.8
ATR0594G196 Amborella trichopoda HOM05D007104 ORTHO05D008851 3.1e-152 543.5 888 50.5
Actinidia05278 Actinidia chinensis HOM05D007104 ORTHO05D008851 4.0e-152 543.1 868 53.0
Sabra06G0104200 Salix brachista HOM05D007104 ORTHO05D008851 1.2e-151 541.6 810 54.1
MBI05_g33311_MAGBIO Magnolia biondii HOM05D007104 ORTHO05D008851 9.8e-151 538.5 688 61.3
CsaV3_4G024380 Cucumis sativus L. HOM05D007104 ORTHO05D008851 1.3e-150 538.1 796 61.1
Cfa017487 Carpinus fangiana HOM05D007104 ORTHO05D008851 1.7e-150 537.7 803 54.8
PGR004G2266 Punica granatum HOM05D007104 ORTHO05D008851 2.2e-150 537.3 793 54.2
COL.COLO4_27102 Corchorus olitorius HOM05D007104 ORTHO05D008851 3.7e-150 536.6 712 60.0
AL6G12100 Arabidopsis lyrata HOM05D007104 ORTHO05D008851 2.4e-149 533.9 793 54.0
Gohir.D04G116200 Gossypium hirsutum HOM05D007104 ORTHO05D008851 4.1e-149 533.1 688 60.2
Sc01g0003660 Simmondsia chinensis HOM05D007104 ORTHO05D008851 1.2e-148 531.6 690 58.7
A10p32890 Brassica napus HOM05D007104 ORTHO05D008851 7.8e-148 528.9 796 54.1
BraA10t45326Z Brassica rapa HOM05D007104 ORTHO05D008851 7.8e-148 528.9 796 54.1
AUR62040527 Chenopodium quinoa HOM05D007104 ORTHO05D008851 7.8e-148 528.9 803 49.2
C09p73820 Brassica napus HOM05D007104 ORTHO05D008851 1.3e-147 528.1 796 53.4
BolC9t60116H Brassica oleracea HOM05D007104 ORTHO05D008851 1.3e-147 528.1 796 53.4
HanXRQChr05g0129241 Helianthus annuus HOM05D007104 ORTHO05D008851 2.3e-147 527.3 808 53.5
Carub.0006s0163 Capsella rubella HOM05D007104 ORTHO05D008851 3.0e-147 526.9 796 54.5
AT5G02830 Arabidopsis thaliana HOM05D007104 ORTHO05D008851 5.0e-147 526.2 793 53.5
BcaC06g32013 Brassica carinata HOM05D007104 ORTHO05D008851 1.5e-146 524.6 797 53.7
CSS0009185 Camellia sinensis var. sinensis HOM05D007104 ORTHO05D008851 1.9e-146 524.2 801 55.1
ClCG04G008780 Citrullus lanatus HOM05D007104 ORTHO05D008851 1.9e-146 524.2 815 58.9
Migut.J00404 Erythranthe guttata HOM05D007104 ORTHO05D008851 1.9e-146 524.2 842 51.7
Sp6g39750 Schrenkiella parvula HOM05D007104 ORTHO05D008851 4.3e-146 523.1 876 50.6
Lsat_1_v5_gn_2_109900 Lactuca sativa HOM05D007104 ORTHO05D008851 1.2e-145 521.5 813 53.3
Thhalv10012661m.g Eutrema salsugineum HOM05D007104 ORTHO05D008851 1.6e-145 521.2 805 47.7
Solyc09g007200.4 Solanum lycopersicum HOM05D007104 ORTHO05D008851 4.0e-144 516.5 885 50.8
Sopen09g002070 Solanum pennellii HOM05D007104 ORTHO05D008851 4.0e-144 516.5 885 50.8
Medtr7g100550 Medicago truncatula HOM05D007104 ORTHO05D008851 8.9e-144 515.4 689 59.9
SalBow3G1198 Salvia bowleyana HOM05D007104 ORTHO05D008851 8.9e-144 515.4 824 46.4
QL07p045556 Quercus lobata HOM05D007104 ORTHO05D008851 2.0e-143 514.2 818 52.8
Cc06_g03420 Coffea canephora HOM05D007104 ORTHO05D008851 4.4e-143 513.1 799 55.6
ECA238G4406 Erigeron canadensis HOM05D001465 ORTHO05D001434 4.4e-143 513.1 812 49.5
arahy.Tifrunner.gnm1.ann1.UD3AFU Arachis hypogaea HOM05D007104 ORTHO05D008851 9.9e-143 511.9 725 49.5
arahy.Tifrunner.gnm1.ann1.Z3T1FA Arachis hypogaea HOM05D007104 ORTHO05D008851 9.9e-143 511.9 725 49.5
Phvul.001G174000 Phaseolus vulgaris HOM05D007104 ORTHO05D008851 1.3e-142 511.5 688 59.4
Hund12063 Selenicereus undatus HOM05D007104 ORTHO05D008851 1.3e-142 511.5 812 47.7
THA.LOC104826989 Tarenaya hassleriana HOM05D007104 ORTHO05D008851 1.7e-142 511.1 797 52.8
Lj1g0014647 Lotus japonicus HOM05D007104 ORTHO05D008851 2.9e-142 510.4 688 59.2
Nitab4.5_0006316g0040 Nicotiana tabacum HOM05D007104 ORTHO05D008851 4.9e-142 509.6 875 52.6
Lalb_Chr20g0112911 Lupinus albus HOM05D007104 ORTHO05D008851 2.4e-141 507.3 696 58.2
DCAR_017721 Daucus carota HOM05D007104 ORTHO05D008851 9.2e-141 505.4 815 52.6
Glyma.19G177700 Glycine max HOM05D007104 ORTHO05D008851 1.2e-140 505.0 685 59.6
Aa31LG1G22070 Aethionema arabicum HOM05D007104 ORTHO05D008851 3.0e-139 500.4 834 44.5
Nitab4.5_0000848g0180 Nicotiana tabacum HOM05D007104 ORTHO05D008851 3.9e-139 500.0 912 45.6
TPR.G36926 Trifolium pratense HOM05D007104 ORTHO05D008851 6.6e-139 499.2 686 57.1
vmacro08689 Vaccinium macrocarpon HOM05D007104 ORTHO05D008851 5.6e-138 496.1 806 52.9
Psat3g045920 Pisum sativum HOM05D007104 ORTHO05D008851 1.6e-137 494.6 688 58.3
Ca_08818_v3 Cicer arietinum L. HOM05D007104 ORTHO05D008851 1.1e-136 491.9 688 56.8
TWI18G0316 Tripterygium wilfordii HOM05D007104 ORTHO05D008851 6.8e-136 489.2 819 52.5
CAN.G350.45 Capsicum annuum HOM05D007104 ORTHO05D008851 5.8e-135 486.1 782 54.5
Lj3C977G16 Lonicera japonica HOM05D007104 ORTHO05D008851 4.6e-132 476.5 820 50.2
MELO3C003069.2 Cucumis melo HOM05D007104 ORTHO05D008851 1.2e-127 461.8 808 42.0
VMungo1383G0332 Vigna mungo HOM05D007104 ORTHO05D008851 1.2e-124 451.8 688 55.1
AUR62042917 Chenopodium quinoa HOM05D007104 ORTHO05D008851 1.3e-121 441.8 798 37.5
HPP92_003603 Vanilla planifolia HOM05D007104 ORTHO05D008851 1.6e-121 441.4 735 52.2
Eucgr.K03203 Eucalyptus grandis HOM05D007104 ORTHO05D008851 2.8e-121 440.7 606 62.0
SGA_v2.0_scaffold126G33879 Striga asiatica HOM05D007104 ORTHO05D008851 2.4e-120 437.6 792 50.0
Os03g0284900 Oryza sativa ssp. japonica HOM05D007104 ORTHO05D008851 2.5e-114 417.5 811 41.4
SEGI_02163 Sequoiadendron giganteum HOM05D007104 ORTHO05D008851 1.1e-109 402.1 828 46.1
Aqoxy2G01885 Aquilegia oxysepala HOM05D007104 ORTHO05D008851 1.6e-97 361.7 582 50.2
Glyma.03G177000 Glycine max HOM05D007104 ORTHO05D008851 1.3e-89 335.5 542 58.3
Zm00001eb397200 Zea mays HOM05D007104 ORTHO05D008851 4.4e-82 310.5 676 34.2
Oeu034822.1 Olea europaea HOM05D007104 ORTHO05D008851 3.2e-77 294.3 409 57.7
Pp3c22_3070 Physcomitrium patens HOM05D007104 ORTHO05D008851 1.8e-75 288.5 811 42.3
Cpa.g.sc45.26 Carica papaya HOM05D007104 ORTHO05D008851 1.3e-70 272.3 549 53.6
Pp3c21_12360 Physcomitrium patens HOM05D007104 ORTHO05D008851 1.7e-70 271.9 803 43.0
Mapoly0039s0098 Marchantia polymorpha HOM05D007104 ORTHO05D008851 6.1e-68 263.5 837 41.5
Atru.chr8.2537 Acer truncatum HOM05D007104 ORTHO05D008851 2.6e-66 258.1 422 59.7
CARHR210500 Cardamine hirsuta HOM05D007104 ORTHO05D008851 1.9e-45 188.7 240 48.8
CDE02G1389 Ceratophyllum demersum HOM05D007104 ORTHO05D008851 4.1e-40 171.0 326 48.5
SMO351G0222 Selaginella moellendorffii HOM05D007104 ORTHO05D008851 5.4e-40 170.6 388 38.7
unitig_16.g32855 Utricularia gibba HOM05D007104 ORTHO05D008851 3.5e-39 167.9 242 43.0
Atru.chr8.2538 Acer truncatum HOM05D007104 ORTHO05D008851 6.6e-38 163.7 228 39.9
Pp3c22_3080 Physcomitrium patens HOM05D007104 ORTHO05D008851 1.2e-18 99.8 226 34.1
Rhsim04G0181000 Rhododendron simsii HOM05D007104 ORTHO05D008851 6.6e-14 84.0 108 41.7
Oeu027653.1 Olea europaea HOM05D007104 ORTHO05D008851 1.5e-13 82.8 157 33.8
Hma1.2p1_0111F.1_g053720 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 2.2e-09 68.9 72 48.6
RcHm_v2.0_Chr3g0468351 Rosa chinensis HOM05D007104 ORTHO05D008851 2.9e-09 68.6 76 48.7
AL6G21210 Arabidopsis lyrata HOM05D007251 ORTHO05D009266 2.4e-08 65.5 168 28.6
CBR_g39241 Chara braunii HOM05D007104 ORTHO05D008851 4.2e-08 64.7 248 43.5
BcaB05g21499 Brassica carinata HOM05D007251 ORTHO05D009266 2.1e-07 62.4 168 28.6
A02p00600 Brassica napus HOM05D007251 ORTHO05D009266 2.1e-07 62.4 168 28.6
BraA02t05043Z Brassica rapa HOM05D007251 ORTHO05D009266 4.6e-07 61.2 168 28.0
arahy.Tifrunner.gnm1.ann1.1I1C4M Arachis hypogaea HOM05D004127 ORTHO05D005119 6.0e-07 60.8 134 26.1
arahy.Tifrunner.gnm1.ann1.X62M7H Arachis hypogaea HOM05D004127 ORTHO05D005119 6.0e-07 60.8 134 26.1
Cc06_g22840 Coffea canephora HOM05D000001 ORTHO05D000003 7.8e-07 60.5 221 21.7
MD08G1128000 Malus domestica HOM05D007251 ORTHO05D009266 7.8e-07 60.5 168 28.6
Sp6g32780 Schrenkiella parvula HOM05D007251 ORTHO05D009266 1.0e-06 60.1 168 28.6
Hund27367 Selenicereus undatus HOM05D006877 ORTHO05D008735 1.3e-06 59.7 159 30.2
BolC2t06419H Brassica oleracea HOM05D007251 ORTHO05D009266 2.3e-06 58.9 168 28.0
CAN.G930.13 Capsicum annuum HOM05D007173 ORTHO05D009151 2.3e-06 58.9 149 26.2
Thhalv10011454m.g Eutrema salsugineum HOM05D002453 ORTHO05D008746 2.3e-06 58.9 179 26.3
Sopen10g021030 Solanum pennellii HOM05D007173 ORTHO05D009151 3.9e-06 58.2 155 26.5
Actinidia24327 Actinidia chinensis HOM05D000001 ORTHO05D009986 5.1e-06 57.8 163 27.6
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 5.1e-06 57.8 171 27.5
BcaC03g13325 Brassica carinata HOM05D007251 ORTHO05D009266 8.7e-06 57.0 168 28.0
C02p04590 Brassica napus HOM05D007251 ORTHO05D009266 8.7e-06 57.0 168 28.0
CSS0049067 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009986 8.7e-06 57.0 224 25.0
FvH4_2g36670 Fragaria vesca HOM05D007251 ORTHO05D009266 8.7e-06 57.0 180 27.2
Solyc10g049570.3 Solanum lycopersicum HOM05D007173 ORTHO05D009151 8.7e-06 57.0 155 27.1
PGSC0003DMG401009781 Solanum tuberosum HOM05D007173 ORTHO05D009151 8.7e-06 57.0 149 26.2
HPP92_019906 Vanilla planifolia HOM05D007063 ORTHO05D008822 8.7e-06 57.0 124 30.6


User provided reference genes

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