Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 8.3e-252 873.2 444 100.0
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 2.8e-239 831.6 444 95.9
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 3.4e-80 303.1 513 41.5
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 2.1e-69 267.3 508 37.0
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 1.5e-67 261.2 522 36.0
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 7.4e-67 258.8 516 36.0
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 1.3e-66 258.1 519 35.6
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 6.9e-65 252.3 506 36.4
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 7.2e-62 242.3 517 35.8
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 7.9e-61 238.8 521 34.5
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 6.7e-60 235.7 514 36.0
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 1.5e-59 234.6 521 37.2
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 1.3e-55 221.5 517 34.8
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 1.8e-52 211.1 511 34.4
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 5.2e-52 209.5 526 33.7
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 5.7e-51 206.1 490 35.1
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 1.4e-49 201.4 335 40.0
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 1.4e-49 201.4 531 32.4
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 2.6e-48 197.2 503 35.0
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 7.7e-48 195.7 507 31.8
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 1.0e-47 195.3 459 34.0
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 1.3e-47 194.9 537 32.0
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 3.8e-47 193.4 463 33.5
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 6.5e-47 192.6 470 33.6
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 1.2e-45 188.3 466 32.0
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 4.7e-45 186.4 477 32.5
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 4.7e-45 186.4 541 31.1
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 1.0e-44 185.3 457 32.8
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 3.0e-44 183.7 513 31.0
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 5.2e-44 183.0 487 30.4
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 1.5e-43 181.4 515 31.8
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 7.5e-43 179.1 422 33.4
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 2.8e-42 177.2 466 32.4
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 4.8e-42 176.4 382 33.5
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 1.4e-41 174.9 600 27.3
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 1.8e-41 174.5 456 31.8
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 1.8e-41 174.5 444 32.0
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 1.2e-40 171.8 453 32.5
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 2.7e-40 170.6 517 31.1
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 1.7e-39 167.9 526 31.4
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 5.0e-39 166.4 626 27.5
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 6.5e-39 166.0 208 42.8
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 1.9e-38 164.5 584 28.6
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 3.2e-38 163.7 401 32.4
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 5.5e-38 162.9 427 33.5
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 9.4e-38 162.2 526 30.6
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 9.4e-38 162.2 252 41.3
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 1.6e-37 161.4 584 28.3
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 2.7e-37 160.6 241 39.8
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 8.0e-37 159.1 588 28.1
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 1.8e-36 157.9 545 30.1
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 3.0e-36 157.1 275 39.3
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 4.0e-36 156.8 275 39.3
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 6.8e-36 156.0 585 28.9
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 2.0e-35 154.5 198 44.9
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 2.6e-35 154.1 556 27.7
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 6.3e-34 149.4 255 39.2
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 5.4e-33 146.4 197 44.2
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 9.1e-33 145.6 493 30.4
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 1.6e-32 144.8 197 43.7
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 2.0e-32 144.4 197 43.7
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 5.9e-32 142.9 407 31.4
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 5.9e-32 142.9 206 41.7
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 7.7e-32 142.5 267 36.0
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 2.3e-31 141.0 355 31.5
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 5.0e-31 139.8 476 28.6
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 5.0e-31 139.8 201 41.8
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.1e-30 138.7 197 43.1
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 1.1e-30 138.7 601 28.0
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 3.3e-30 137.1 417 32.4
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 5.6e-30 136.3 185 44.3
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 9.5e-30 135.6 572 29.2
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 5.2e-28 129.8 185 41.1
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 6.8e-28 129.4 373 30.3
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 1.2e-27 128.6 186 41.4
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.5e-27 128.3 202 40.6
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 2.0e-27 127.9 369 33.6
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 2.0e-27 127.9 356 33.1
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 2.0e-27 127.9 459 31.6
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 3.4e-27 127.1 410 32.2
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 3.4e-27 127.1 354 30.2
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 4.4e-27 126.7 202 39.6
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 1.3e-26 125.2 186 42.5
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 2.9e-26 124.0 475 28.8
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 2.9e-26 124.0 377 30.0
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 2.9e-26 124.0 201 39.3
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 3.7e-26 123.6 403 32.0
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 1.8e-25 121.3 190 41.1
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 7.0e-25 119.4 443 30.5
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 2.7e-24 117.5 356 32.3
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 4.6e-24 116.7 184 41.3
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 4.6e-24 116.7 381 30.2
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 1.3e-23 115.2 245 35.1
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 1.3e-23 115.2 245 35.1
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 2.3e-23 114.4 442 28.3
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 2.9e-23 114.0 184 39.1
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 3.9e-23 113.6 250 34.0
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 5.0e-23 113.2 370 29.5
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 6.6e-23 112.8 370 30.3
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 1.1e-22 112.1 261 33.0
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 2.5e-22 110.9 338 30.8
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 4.7e-21 106.7 184 37.5
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 4.7e-21 106.7 412 28.9
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 6.2e-21 106.3 114 50.0
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 8.0e-21 105.9 185 37.3
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 2.3e-20 104.4 201 35.3
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 3.1e-20 104.0 185 37.3
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 3.1e-20 104.0 185 37.3
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 8.9e-20 102.4 439 26.7
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 1.2e-19 102.1 151 39.7
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 3.4e-19 100.5 185 36.8
CDE05G0211 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 2.2e-18 97.8 489 27.2
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 4.1e-17 93.6 391 26.6
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 1.2e-16 92.0 365 28.2
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 1.3e-15 88.6 285 32.6
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 2.1e-13 81.3 300 28.0
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 2.1e-13 81.3 300 28.0
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 8.9e-12 75.9 112 42.0
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 1.3e-07 62.0 290 27.9
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 1.3e-07 62.0 116 36.2
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 6.6e-07 59.7 319 21.3
HPP92_018560 Vanilla planifolia HOM05D005385 ORTHO05D006768 8.6e-07 59.3 104 37.5


User provided reference genes

Program Settings