Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G2469 Papaver somniferum HOM05D006472 ORTHO05D008222 0.0e+00 1419.8 719 100.0
PSO339G5368 Papaver somniferum HOM05D006472 ORTHO05D008222 0.0e+00 1397.1 719 98.3
Nn5g26767 Nelumbo nucifera HOM05D006472 ORTHO05D008222 0.0e+00 1130.9 720 79.3
TAR369G0765 Trochodendron aralioides HOM05D006472 ORTHO05D008222 0.0e+00 1119.0 718 79.0
GSVIVG01024525001 Vitis vinifera HOM05D006472 ORTHO05D008222 0.0e+00 1102.0 721 77.3
Actinidia34511 Actinidia chinensis HOM05D006472 ORTHO05D008222 1.5e-311 1072.4 720 74.6
CSS0014639 Camellia sinensis var. sinensis HOM05D006472 ORTHO05D008222 1.4e-309 1065.8 721 74.6
Glyma.14G207300 Glycine max HOM05D006472 ORTHO05D008222 5.6e-306 1053.9 721 73.4
QL01p023614 Quercus lobata HOM05D006472 ORTHO05D008222 2.1e-305 1052.0 721 73.1
Glyma.02G238400 Glycine max HOM05D006472 ORTHO05D008222 1.8e-304 1048.9 721 72.8
vmacro14657 Vaccinium macrocarpon HOM05D006472 ORTHO05D008222 1.8e-304 1048.9 720 72.5
Phvul.008G243600 Phaseolus vulgaris HOM05D006472 ORTHO05D008222 4.0e-304 1047.7 721 72.8
Dinv28760 Davidia involucrata HOM05D006472 ORTHO05D008222 4.4e-303 1044.3 707 74.4
CDE07G0456 Ceratophyllum demersum HOM05D006472 ORTHO05D008222 6.4e-302 1040.4 720 71.5
Aqoxy2G00669 Aquilegia oxysepala HOM05D006472 ORTHO05D008222 1.4e-301 1039.3 717 71.7
Hma1.2p1_0170F.1_g075410 Hydrangea macrophylla HOM05D006472 ORTHO05D008222 1.4e-301 1039.3 720 72.9
VMungo0647G2416 Vigna mungo HOM05D006472 ORTHO05D008222 1.4e-301 1039.3 721 72.5
Lalb_Chr10g0103951 Lupinus albus HOM05D006472 ORTHO05D008222 2.4e-301 1038.5 722 72.2
CiPaw.13G059900 Carya illinoinensis HOM05D006472 ORTHO05D008222 1.2e-300 1036.2 724 72.5
Cfa011860 Carpinus fangiana HOM05D006472 ORTHO05D008222 2.0e-300 1035.4 725 71.7
Prupe.6G038300 Prunus persica HOM05D006472 ORTHO05D008222 2.7e-300 1035.0 721 72.4
LjContig00141g0008115 Lotus japonicus HOM05D006472 ORTHO05D008222 5.0e-299 1030.8 723 71.2
MD03G1047100 Malus domestica HOM05D006472 ORTHO05D008222 7.3e-298 1026.9 721 72.4
CANSAT54G2825 Cannabis sativa HOM05D006472 ORTHO05D008222 9.5e-298 1026.5 722 70.5
MELO3C013696.2 Cucumis melo HOM05D006472 ORTHO05D008222 3.6e-297 1024.6 720 72.4
Rhsim01G0245200 Rhododendron simsii HOM05D006472 ORTHO05D008222 2.6e-295 1018.5 789 66.5
EL10Ac8g20566 Beta vulgaris HOM05D006472 ORTHO05D008222 5.8e-295 1017.3 722 71.7
RcHm_v2.0_Chr5g0073921 Rosa chinensis HOM05D006472 ORTHO05D008222 4.9e-294 1014.2 722 71.5
Ca_05732_v3 Cicer arietinum L. HOM05D006472 ORTHO05D008222 8.3e-294 1013.4 725 70.9
Medtr5g075970 Medicago truncatula HOM05D006472 ORTHO05D008222 4.6e-292 1007.7 717 70.4
FvH4_3g41130 Fragaria vesca HOM05D006472 ORTHO05D008222 8.6e-291 1003.4 723 70.3
FAN11G3159 Fragaria x ananassa HOM05D006472 ORTHO05D008222 3.3e-290 1001.5 723 70.1
FAN21G1719 Fragaria x ananassa HOM05D006472 ORTHO05D008222 7.3e-290 1000.3 723 70.0
FAN16G1417 Fragaria x ananassa HOM05D006472 ORTHO05D008222 1.6e-289 999.2 723 70.0
Atru.chr10.2355 Acer truncatum HOM05D006472 ORTHO05D008222 4.0e-288 994.6 721 69.8
ECA248G1121 Erigeron canadensis HOM05D006472 ORTHO05D008222 1.7e-286 989.2 720 67.9
TPR.G15403 Trifolium pratense HOM05D006472 ORTHO05D008222 1.7e-286 989.2 714 69.9
Manes.18G123800 Manihot esculenta HOM05D006472 ORTHO05D008222 8.3e-286 986.9 722 69.3
Potri.019G133000 Populus trichocarpa HOM05D006472 ORTHO05D008222 9.2e-285 983.4 724 68.6
Lj2C1106G3 Lonicera japonica HOM05D006472 ORTHO05D008222 1.6e-284 982.6 721 69.8
AUR62039472 Chenopodium quinoa HOM05D006472 ORTHO05D008222 2.1e-284 982.2 726 70.1
HanXRQChr11g0338241 Helianthus annuus HOM05D006472 ORTHO05D008222 1.3e-283 979.5 722 67.2
Haze_24495 Corylus avellana HOM05D006472 ORTHO05D008222 5.1e-283 977.6 833 62.2
Lsat_1_v5_gn_5_176920 Lactuca sativa HOM05D006472 ORTHO05D008222 5.6e-282 974.2 721 66.7
Thecc.09G366100 Theobroma cacao HOM05D006472 ORTHO05D008222 2.1e-281 972.2 727 68.1
Psat2g049480 Pisum sativum HOM05D006472 ORTHO05D008222 1.1e-280 969.9 725 67.4
Sabra19G0129200 Salix brachista HOM05D006472 ORTHO05D008222 1.8e-280 969.1 734 67.8
Migut.N00711 Erythranthe guttata HOM05D006472 ORTHO05D008222 8.9e-280 966.8 720 67.6
Solyc09g055340.4 Solanum lycopersicum HOM05D006472 ORTHO05D008222 9.9e-279 963.4 721 68.1
Eucgr.J01848 Eucalyptus grandis HOM05D006472 ORTHO05D008222 2.2e-278 962.2 722 67.3
Ah.09g233500 Amaranthus hybridus HOM05D006472 ORTHO05D008222 5.4e-277 957.6 720 67.4
FAN25G3237 Fragaria x ananassa HOM05D006472 ORTHO05D008222 9.2e-277 956.8 723 68.0
Sopen09g017740 Solanum pennellii HOM05D006472 ORTHO05D008222 2.5e-274 948.7 695 68.9
TWI31G0750 Tripterygium wilfordii HOM05D006472 ORTHO05D008222 9.6e-274 946.8 727 68.1
SGA_v2.0_scaffold120G33005 Striga asiatica HOM05D006472 ORTHO05D008222 1.4e-272 943.0 731 66.3
Gohir.D03G146000 Gossypium hirsutum HOM05D006472 ORTHO05D008222 5.3e-272 941.0 722 66.8
PGR119G0508 Punica granatum HOM05D006472 ORTHO05D008222 3.2e-269 931.8 725 67.0
Gohir.A03G022700 Gossypium hirsutum HOM05D006472 ORTHO05D008222 5.4e-269 931.0 717 66.4
arahy.Tifrunner.gnm1.ann1.LP7W2Z Arachis hypogaea HOM05D006472 ORTHO05D008222 1.2e-268 929.9 719 66.6
Sed0004215 Sechium edule HOM05D006472 ORTHO05D008222 3.3e-266 921.8 621 74.6
Duzib168G0790 Durio zibethinus HOM05D006472 ORTHO05D008222 3.6e-265 918.3 729 65.7
arahy.Tifrunner.gnm1.ann1.9899SL Arachis hypogaea HOM05D006472 ORTHO05D008222 2.7e-260 902.1 719 65.8
COL.COLO4_08158 Corchorus olitorius HOM05D006472 ORTHO05D008222 1.1e-258 896.7 732 63.1
Sc11g0008920 Simmondsia chinensis HOM05D006472 ORTHO05D008222 2.4e-256 889.0 655 69.9
THA.LOC104798389 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 1.5e-255 886.3 722 60.8
ATR1127G223 Amborella trichopoda HOM05D006472 ORTHO05D008222 9.9e-255 883.6 710 63.8
AL8G25600 Arabidopsis lyrata HOM05D006472 ORTHO05D008222 7.4e-250 867.5 720 61.1
AT5G51340 Arabidopsis thaliana HOM05D006472 ORTHO05D008222 1.8e-248 862.8 721 60.7
Sp6g13540 Schrenkiella parvula HOM05D006472 ORTHO05D008222 3.1e-248 862.1 720 60.1
Carub.0008s1136 Capsella rubella HOM05D006472 ORTHO05D008222 6.9e-248 860.9 720 60.4
HPP92_024263 Vanilla planifolia HOM05D006472 ORTHO05D008222 3.8e-246 855.1 721 61.3
Aa31LG3G7830 Aethionema arabicum HOM05D006472 ORTHO05D008222 4.9e-246 854.7 713 59.6
HPP92_024257 Vanilla planifolia HOM05D006472 ORTHO05D008222 8.4e-246 854.0 721 61.2
BcaB08g35491 Brassica carinata HOM05D006472 ORTHO05D008222 2.7e-244 849.0 720 59.0
BraA10t42993Z Brassica rapa HOM05D006472 ORTHO05D008222 2.3e-243 845.9 721 58.8
A10p09080 Brassica napus HOM05D006472 ORTHO05D008222 5.1e-243 844.7 721 58.7
Thhalv10012792m.g Eutrema salsugineum HOM05D006472 ORTHO05D008222 1.1e-242 843.6 723 59.5
BcaC04g20686 Brassica carinata HOM05D006472 ORTHO05D008222 1.3e-241 840.1 720 58.5
C09p40600 Brassica napus HOM05D006472 ORTHO05D008222 1.3e-241 840.1 720 58.5
BolC9t56942H Brassica oleracea HOM05D006472 ORTHO05D008222 1.3e-241 840.1 720 58.5
Medtr6g049450 Medicago truncatula HOM05D006472 ORTHO05D008222 4.8e-217 758.4 660 58.8
DCAR_012719 Daucus carota HOM05D006472 ORTHO05D008222 8.8e-211 737.6 586 65.2
Zm00001eb193950 Zea mays HOM05D006472 ORTHO05D008222 3.5e-207 725.7 729 55.4
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 9.5e-197 691.0 670 56.3
Ciclev10000965m.g Citrus clementina HOM05D006472 ORTHO05D008222 2.1e-196 689.9 479 71.0
SMO119G0519 Selaginella moellendorffii HOM05D006472 ORTHO05D008222 2.4e-192 676.4 681 53.7
Mapoly0020s0144 Marchantia polymorpha HOM05D006472 ORTHO05D008222 3.1e-187 659.4 665 52.6
Oeu034746.1 Olea europaea HOM05D006472 ORTHO05D008222 1.2e-180 637.5 471 70.3
Pp3c10_12710 Physcomitrium patens HOM05D006472 ORTHO05D008222 1.6e-180 637.1 675 50.8
Pp3c26_4960 Physcomitrium patens HOM05D006472 ORTHO05D008222 7.5e-178 628.2 669 51.0
Nitab4.5_0002030g0020 Nicotiana tabacum HOM05D006472 ORTHO05D008222 2.5e-173 613.2 602 55.5
CsaV3_3G000010 Cucumis sativus L. HOM05D006472 ORTHO05D008222 4.3e-173 612.5 434 74.2
AagrBONN_evm.TU.Sc2ySwM_117.3516 Anthoceros agrestis HOM05D006472 ORTHO05D008222 1.4e-152 544.3 664 46.5
AUR62041830 Chenopodium quinoa HOM05D006472 ORTHO05D008222 2.5e-149 533.5 508 57.1
Peaxi162Scf00293g00816 Petunia axillaris HOM05D006472 ORTHO05D008222 1.7e-145 520.8 426 63.8
THA.LOC104824615 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 1.7e-145 520.8 429 59.0
CBR_g46787 Chara braunii HOM05D006472 ORTHO05D008222 2.5e-128 463.8 659 39.5
THA.LOC104824654 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 4.6e-127 459.5 391 58.1
ClCG10G000020 Citrullus lanatus HOM05D006472 ORTHO05D008222 7.9e-127 458.8 376 63.0
Os04g0347600 Oryza sativa ssp. japonica HOM05D006472 ORTHO05D008222 1.3e-121 441.4 334 67.4
Nitab4.5_0000195g0150 Nicotiana tabacum HOM05D006472 ORTHO05D008222 5.7e-117 426.0 480 51.2
Cc01_g15530 Coffea canephora HOM05D006472 ORTHO05D008222 2.5e-112 410.6 306 65.0
ClCG10G000010 Citrullus lanatus HOM05D006472 ORTHO05D008222 3.2e-112 410.2 347 63.7
Cpa.g.sc2.260 Carica papaya HOM05D006472 ORTHO05D008222 1.1e-109 401.7 393 53.9
Nn5g26768 Nelumbo nucifera HOM05D006472 ORTHO05D008222 1.0e-105 388.7 228 86.8
Cpa.g.sc2.261 Carica papaya HOM05D006472 ORTHO05D008222 4.7e-103 379.8 311 64.3
SHI30108 Sapria himalayana HOM05D006714 ORTHO05D008103 2.2e-100 370.9 581 39.9
Cc01_g15520 Coffea canephora HOM05D006472 ORTHO05D008222 1.3e-97 361.7 270 68.1
CARHR264090 Cardamine hirsuta HOM05D006472 ORTHO05D008222 3.8e-97 360.1 295 62.4
Atru.chr10.2358 Acer truncatum HOM05D006472 ORTHO05D008222 2.3e-73 281.2 237 59.9
Nitab4.5_0001025g0010 Nicotiana tabacum HOM05D006472 ORTHO05D008222 3.0e-65 254.2 204 61.8
Ciclev10004061m.g Citrus clementina HOM05D006472 ORTHO05D008222 1.3e-52 212.2 153 71.2
Gorai.003G153200 Gossypium raimondii HOM05D006472 ORTHO05D008222 2.7e-50 204.5 158 67.1
SEGI_25118 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 9.9e-45 186.0 137 64.2
Haze_06065 Corylus avellana HOM05D000100 ORTHO05D000052 7.9e-34 149.8 147 49.0
MCO15G146 Micromonas commoda HOM05D006472 ORTHO05D008222 1.9e-32 145.2 725 24.6
Peaxi162Scf00293g00815 Petunia axillaris HOM05D006472 ORTHO05D008222 5.1e-25 120.6 106 58.5
SEGI_41332 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 1.0e-20 106.3 71 73.2
Lsat_1_v5_gn_5_131141 Lactuca sativa HOM05D006472 ORTHO05D008222 2.5e-19 101.7 69 69.6
Cre12.g532650 Chlamydomonas reinhardtii HOM05D006472 ORTHO05D008222 3.7e-15 87.8 681 23.5
Actinidia23826 Actinidia chinensis HOM05D006472 ORTHO05D008222 5.9e-13 80.5 70 61.4
Medtr5g078560 Medicago truncatula HOM05D006472 ORTHO05D008222 6.7e-09 67.0 45 68.9


User provided reference genes

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