Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 1.4e-176 622.9 323 100.0
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 1.2e-167 593.2 323 96.0
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 4.7e-103 378.6 321 62.6
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 1.7e-100 370.2 323 61.0
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 3.6e-95 352.4 324 59.3
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 1.3e-92 344.0 324 57.7
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 1.0e-89 334.3 325 56.3
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 3.8e-89 332.4 323 56.0
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 6.5e-89 331.6 322 55.9
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 4.2e-88 328.9 333 55.0
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 9.5e-88 327.8 319 56.7
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.8e-87 326.2 324 55.6
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 3.6e-87 325.9 320 54.7
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 8.0e-87 324.7 323 53.9
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 2.3e-86 323.2 301 56.1
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 5.2e-86 322.0 299 57.5
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.2e-85 320.9 313 55.6
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 1.5e-85 320.5 315 56.5
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 2.0e-85 320.1 313 55.6
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 3.4e-85 319.3 323 53.3
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 1.7e-84 317.0 312 53.8
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 2.2e-84 316.6 324 53.7
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 2.8e-84 316.2 312 56.4
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 3.7e-84 315.8 325 53.8
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 8.3e-84 314.7 313 55.9
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 4.1e-83 312.4 317 54.9
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 1.6e-82 310.5 317 54.6
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 2.0e-82 310.1 319 53.6
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 2.7e-82 309.7 320 51.6
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 3.5e-82 309.3 325 53.8
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 1.0e-81 307.8 324 50.9
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 1.3e-81 307.4 317 54.6
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 2.9e-81 306.2 324 52.8
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 6.6e-81 305.1 320 50.6
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 8.6e-81 304.7 324 52.5
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 8.6e-81 304.7 322 50.6
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 1.5e-80 303.9 324 51.5
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 2.5e-80 303.1 320 50.3
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 4.3e-80 302.4 325 53.2
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 5.6e-80 302.0 321 51.7
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 7.3e-80 301.6 325 52.6
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 9.5e-80 301.2 320 52.5
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.2e-79 300.8 333 50.8
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 1.2e-79 300.8 322 50.3
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 1.6e-79 300.4 280 56.8
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 2.1e-79 300.1 316 50.6
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 1.0e-78 297.7 314 53.2
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 1.8e-78 297.0 293 56.0
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 1.8e-78 297.0 317 52.7
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 4.0e-78 295.8 306 53.9
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 4.0e-78 295.8 326 50.0
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 4.0e-78 295.8 321 51.4
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 5.2e-78 295.4 317 51.4
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 6.8e-78 295.0 315 50.5
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 2.0e-77 293.5 317 50.8
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 9.8e-77 291.2 326 49.7
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 2.2e-76 290.0 316 50.6
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 3.7e-76 289.3 324 50.0
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 6.4e-76 288.5 324 49.7
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 8.3e-76 288.1 318 51.6
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 1.8e-75 287.0 318 51.6
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 3.2e-75 286.2 345 49.0
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 4.1e-75 285.8 318 51.3
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 2.0e-74 283.5 326 50.6
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 2.7e-74 283.1 318 50.0
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 6.0e-74 282.0 319 49.2
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 1.0e-73 281.2 275 54.9
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 1.0e-73 281.2 295 52.5
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 1.7e-73 280.4 323 48.6
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 1.7e-73 280.4 324 49.1
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 1.7e-73 280.4 323 50.2
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 2.3e-73 280.0 321 48.9
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 2.3e-73 280.0 295 52.9
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 3.0e-73 279.6 323 47.4
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 3.9e-73 279.3 325 48.6
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 5.0e-73 278.9 323 48.0
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 5.0e-73 278.9 323 48.0
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 5.0e-73 278.9 323 48.0
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 8.6e-73 278.1 323 49.5
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 1.1e-72 277.7 323 49.5
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 1.5e-72 277.3 314 50.0
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 1.5e-72 277.3 318 48.1
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 2.5e-72 276.6 318 49.4
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 4.3e-72 275.8 328 48.2
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 4.3e-72 275.8 318 48.1
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 4.3e-72 275.8 315 50.8
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 4.3e-72 275.8 323 47.7
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 9.5e-72 274.6 323 47.7
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 9.5e-72 274.6 323 47.7
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 9.5e-72 274.6 321 47.7
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 9.5e-72 274.6 320 47.8
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 1.6e-71 273.9 319 48.0
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 1.6e-71 273.9 319 48.0
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 2.8e-71 273.1 319 48.0
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 2.8e-71 273.1 346 48.8
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 3.6e-71 272.7 325 48.9
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 4.7e-71 272.3 323 48.9
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 8.0e-71 271.6 318 47.5
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.1e-70 271.2 328 47.6
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 1.1e-70 271.2 319 48.0
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 1.1e-70 271.2 319 48.0
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 1.1e-70 271.2 319 48.3
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 1.1e-70 271.2 319 50.8
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 1.1e-70 271.2 317 49.2
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 1.4e-70 270.8 325 48.6
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 1.4e-70 270.8 322 50.9
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 1.8e-70 270.4 319 48.0
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 2.3e-70 270.0 319 49.5
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 3.1e-70 269.6 319 47.6
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 3.1e-70 269.6 319 47.6
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 3.1e-70 269.6 319 47.6
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 4.0e-70 269.2 324 49.1
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 4.0e-70 269.2 318 49.7
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 5.2e-70 268.9 319 48.6
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 6.8e-70 268.5 324 48.5
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 2.6e-69 266.5 314 48.7
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 7.5e-69 265.0 319 47.0
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 9.8e-69 264.6 324 47.2
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 1.7e-68 263.8 287 50.9
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 2.2e-68 263.5 315 47.0
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 4.9e-68 262.3 319 46.1
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 8.3e-68 261.5 319 47.0
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 1.4e-67 260.8 284 52.5
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 1.9e-67 260.4 259 53.3
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 4.1e-67 259.2 318 47.2
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 7.0e-67 258.5 259 52.9
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 7.0e-67 258.5 422 40.0
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 2.0e-66 256.9 331 47.1
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 1.7e-65 253.8 318 46.2
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 8.6e-65 251.5 289 49.8
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 6.2e-63 245.4 372 42.5
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 5.2e-62 242.3 261 49.4
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.7e-60 237.3 261 51.3
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 2.3e-57 226.9 328 45.4
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 3.1e-54 216.5 320 43.4
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 2.2e-44 183.7 251 41.0
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 1.4e-43 181.0 226 43.8
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 1.3e-36 157.9 215 43.7
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 1.3e-33 147.9 168 50.6
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 6.2e-31 139.0 321 31.2
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 1.1e-30 138.3 321 29.6
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 6.9e-30 135.6 308 31.5
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 5.8e-29 132.5 166 45.2
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 3.2e-27 126.7 182 41.8
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 5.5e-27 125.9 172 44.8
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 1.0e-25 121.7 324 30.6
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 5.6e-24 115.9 137 48.2
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.6e-23 114.4 137 47.4
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 7.9e-18 95.5 140 42.1
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 3.0e-17 93.6 151 39.1
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 5.7e-16 89.4 93 53.8
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 5.7e-16 89.4 93 53.8
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.2e-15 87.4 102 49.0
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 1.8e-14 84.3 107 47.7
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 9.0e-14 82.0 88 48.9
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 1.0e-12 78.6 73 54.8
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 1.0e-12 78.6 73 54.8
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 8.5e-12 75.5 116 42.2
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 3.2e-11 73.6 100 44.0
Zm00001eb132370 Zea mays HOM05D004300 ORTHO05D005171 2.7e-10 70.5 98 42.9


User provided reference genes

Program Settings