Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 2.4e-108 395.6 206 100.0
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 1.2e-104 383.3 209 97.1
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 8.5e-66 254.2 209 61.7
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.6e-64 250.0 209 60.3
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 3.0e-63 245.7 206 61.7
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 3.0e-63 245.7 207 59.4
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 5.1e-63 245.0 202 61.9
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 8.8e-63 244.2 198 63.6
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 4.8e-61 238.4 207 58.0
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 4.8e-61 238.4 206 58.3
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 8.2e-61 237.7 209 60.3
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 8.2e-61 237.7 209 60.3
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 1.1e-60 237.3 200 59.0
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 1.4e-60 236.9 207 59.4
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 1.4e-60 236.9 207 59.4
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 2.4e-60 236.1 206 57.8
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 2.4e-60 236.1 200 60.0
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 3.1e-60 235.7 207 58.9
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 6.9e-60 234.6 202 56.9
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 1.2e-59 233.8 192 63.0
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 2.6e-59 232.6 200 61.5
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 2.6e-59 232.6 200 58.5
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 5.9e-59 231.5 207 57.0
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 7.7e-59 231.1 200 58.0
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 1.7e-58 229.9 196 57.7
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 3.8e-58 228.8 199 61.3
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 6.5e-58 228.0 207 56.0
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 8.5e-58 227.6 207 55.1
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 8.5e-58 227.6 196 56.6
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 1.1e-57 227.3 201 58.7
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 2.5e-57 226.1 209 54.1
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 3.2e-57 225.7 202 56.9
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 1.6e-56 223.4 208 54.3
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 7.9e-56 221.1 202 54.5
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 7.9e-56 221.1 205 54.6
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 7.9e-56 221.1 202 55.4
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 1.5e-54 216.9 195 55.4
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 2.6e-54 216.1 184 62.5
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 2.6e-54 216.1 198 55.1
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 2.6e-54 216.1 199 55.8
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 3.3e-54 215.7 191 57.6
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 3.3e-54 215.7 207 54.6
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 3.3e-54 215.7 207 53.6
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 5.7e-54 214.9 202 52.5
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 5.7e-54 214.9 197 57.4
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 7.4e-54 214.5 208 55.8
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 7.4e-54 214.5 196 57.7
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 1.3e-53 213.8 197 56.3
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 2.2e-53 213.0 198 55.6
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 2.2e-53 213.0 200 53.5
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 2.8e-53 212.6 193 58.5
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 3.1e-52 209.1 208 53.4
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 7.0e-52 208.0 200 56.0
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 7.0e-52 208.0 202 53.5
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 7.0e-52 208.0 196 54.1
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 2.0e-51 206.5 198 54.5
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 2.6e-51 206.1 201 53.2
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 3.5e-51 205.7 206 51.5
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 5.9e-51 204.9 221 51.1
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 7.7e-51 204.5 198 52.5
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 7.7e-51 204.5 198 52.5
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 7.7e-51 204.5 199 52.8
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 7.7e-51 204.5 198 54.5
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.3e-50 203.8 193 54.4
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 1.7e-50 203.4 205 52.7
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 2.2e-50 203.0 167 61.7
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 6.5e-50 201.4 212 51.4
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 8.5e-50 201.1 204 51.5
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 1.5e-49 200.3 201 51.7
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 1.5e-49 200.3 202 52.5
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 2.5e-49 199.5 178 58.4
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 3.2e-49 199.1 206 53.4
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 4.2e-49 198.7 192 56.8
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 5.5e-49 198.4 209 50.7
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 7.2e-49 198.0 189 52.4
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 7.2e-49 198.0 192 56.8
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 2.1e-48 196.4 198 51.5
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 3.6e-48 195.7 197 53.3
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 4.7e-48 195.3 200 53.0
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 6.1e-48 194.9 206 50.5
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 8.0e-48 194.5 197 53.3
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 1.0e-47 194.1 196 52.6
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 1.0e-47 194.1 197 52.8
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 1.0e-47 194.1 200 53.5
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 1.8e-47 193.4 207 52.2
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 1.8e-47 193.4 197 52.8
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 4.0e-47 192.2 197 52.3
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 5.2e-47 191.8 188 50.5
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 8.8e-47 191.0 191 54.5
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 1.5e-46 190.3 206 49.0
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 9.7e-46 187.6 197 49.2
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 1.3e-45 187.2 212 47.2
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 1.3e-45 187.2 198 48.5
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 1.7e-45 186.8 197 52.8
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 2.2e-45 186.4 200 49.0
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 2.2e-45 186.4 201 48.8
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 6.3e-45 184.9 212 46.7
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 1.4e-44 183.7 209 51.7
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 9.1e-44 181.0 215 47.9
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 1.6e-43 180.3 198 46.5
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 3.5e-43 179.1 188 48.4
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 5.9e-43 178.3 133 64.7
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 1.0e-42 177.6 207 45.9
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 1.7e-42 176.8 145 59.3
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 2.9e-42 176.0 199 46.2
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 1.1e-41 174.1 211 45.5
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 1.1e-41 174.1 211 45.5
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 2.5e-41 172.9 197 46.2
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 5.5e-41 171.8 211 45.0
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 5.5e-41 171.8 211 45.0
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 1.2e-38 164.1 210 43.3
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 2.6e-38 162.9 166 54.8
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 2.2e-37 159.8 201 47.3
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 3.1e-36 156.0 165 53.3
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 2.6e-30 136.3 207 42.5
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 2.8e-29 132.9 119 59.7
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 1.2e-27 127.5 122 58.2
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 7.8e-27 124.8 207 36.2
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 5.0e-26 122.1 207 36.2
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 1.6e-24 117.1 208 34.1
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 3.6e-24 115.9 208 33.7
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 3.6e-24 115.9 208 33.7
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 2.3e-23 113.2 203 33.0
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 3.0e-23 112.8 208 32.7
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 5.2e-23 112.1 200 38.5
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 1.2e-22 110.9 207 35.3
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 3.4e-22 109.4 82 62.2
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 5.8e-22 108.6 184 32.6
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 2.2e-21 106.7 201 35.8
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 7.0e-20 101.7 176 35.8
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 7.0e-20 101.7 186 35.5
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 5.6e-17 92.0 191 33.0
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 9.5e-17 91.3 178 31.5
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 1.2e-14 84.3 172 35.5
Zm00001eb353150 Zea mays HOM05D004800 ORTHO05D005842 6.0e-11 72.0 134 38.8
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 8.6e-10 68.2 95 34.7
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 9.5e-09 64.7 139 27.3
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 1.2e-08 64.3 104 35.6
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 1.6e-08 63.9 58 46.6
MCO11G643 Micromonas commoda HOM05D004800 ORTHO05D005842 2.6e-06 56.6 114 30.7
TPR.G31499 Trifolium pratense HOM05D000201 ORTHO05D016113 3.4e-06 56.2 58 44.8
Sopen01g020190 Solanum pennellii HOM05D004800 ORTHO05D005842 4.4e-06 55.8 69 53.6
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 7.5e-06 55.1 63 36.5


User provided reference genes

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