Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 5.0e-34 147.1 70 100.0
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 3.0e-23 111.3 70 74.3
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 8.8e-23 109.8 70 74.3
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 8.8e-23 109.8 70 72.9
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 1.1e-22 109.4 70 74.3
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 1.1e-22 109.4 70 74.3
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 1.5e-22 109.0 64 79.7
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 1.5e-22 109.0 66 77.3
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 1.5e-22 109.0 70 70.0
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 2.0e-22 108.6 70 72.9
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 4.4e-22 107.5 67 74.6
AUR62019420 Chenopodium quinoa HOM05D005352 ORTHO05D006371 4.4e-22 107.5 66 75.8
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 4.4e-22 107.5 69 69.6
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 4.4e-22 107.5 70 72.9
AUR62034294 Chenopodium quinoa HOM05D002732 ORTHO05D002955 5.7e-22 107.1 66 75.8
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 7.4e-22 106.7 65 73.8
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 9.7e-22 106.3 70 70.0
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 1.3e-21 105.9 65 75.4
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 1.3e-21 105.9 58 79.3
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 1.3e-21 105.9 57 82.5
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.7e-21 105.5 70 71.4
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 1.7e-21 105.5 65 73.8
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 1.7e-21 105.5 65 73.8
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 2.8e-21 104.8 70 70.0
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 2.8e-21 104.8 70 71.4
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 3.7e-21 104.4 66 72.7
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 3.7e-21 104.4 66 71.2
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 3.7e-21 104.4 66 71.2
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 3.7e-21 104.4 66 71.2
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 4.8e-21 104.0 70 68.6
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 6.3e-21 103.6 67 70.1
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 6.3e-21 103.6 65 72.3
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 6.3e-21 103.6 65 72.3
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 6.3e-21 103.6 61 80.3
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 6.3e-21 103.6 70 72.9
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 8.2e-21 103.2 52 82.7
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 8.2e-21 103.2 62 72.6
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 1.1e-20 102.8 65 75.4
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 1.1e-20 102.8 65 70.8
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.1e-20 102.8 72 70.8
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 1.1e-20 102.8 72 70.8
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 1.1e-20 102.8 65 75.4
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 1.4e-20 102.4 70 65.7
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 1.4e-20 102.4 70 67.1
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 1.4e-20 102.4 70 67.1
Lalb_Chr01g0006571 Lupinus albus HOM05D005352 ORTHO05D006371 1.4e-20 102.4 65 73.8
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 1.4e-20 102.4 70 68.6
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 1.8e-20 102.1 63 74.6
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 2.4e-20 101.7 51 86.3
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 2.4e-20 101.7 56 78.6
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 2.4e-20 101.7 67 70.1
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 2.4e-20 101.7 51 84.3
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 2.4e-20 101.7 70 70.0
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 2.4e-20 101.7 65 72.3
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 3.1e-20 101.3 52 82.7
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 3.1e-20 101.3 66 74.2
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 3.1e-20 101.3 62 74.2
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 3.1e-20 101.3 63 68.3
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 3.1e-20 101.3 64 71.9
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 3.1e-20 101.3 50 82.0
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 3.1e-20 101.3 69 72.5
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 3.1e-20 101.3 61 75.4
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 3.1e-20 101.3 52 82.7
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 3.1e-20 101.3 63 73.0
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 4.1e-20 100.9 66 69.7
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 4.1e-20 100.9 62 72.6
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 4.1e-20 100.9 70 70.0
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 4.1e-20 100.9 64 73.4
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 4.1e-20 100.9 57 75.4
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 4.1e-20 100.9 61 73.8
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 5.3e-20 100.5 69 66.7
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 5.3e-20 100.5 69 73.9
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 6.9e-20 100.1 69 69.6
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 6.9e-20 100.1 52 82.7
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 6.9e-20 100.1 62 72.6
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 6.9e-20 100.1 70 68.6
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 6.9e-20 100.1 50 82.0
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 6.9e-20 100.1 58 77.6
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 9.1e-20 99.8 56 76.8
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 9.1e-20 99.8 56 76.8
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 1.2e-19 99.4 68 64.7
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 1.2e-19 99.4 64 68.8
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 1.2e-19 99.4 65 72.3
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 1.2e-19 99.4 56 75.0
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 1.5e-19 99.0 52 82.7
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 1.5e-19 99.0 52 80.8
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 1.5e-19 99.0 66 68.2
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 2.0e-19 98.6 75 65.3
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 2.0e-19 98.6 70 65.7
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 2.0e-19 98.6 65 67.7
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 2.0e-19 98.6 71 66.2
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 2.0e-19 98.6 67 67.2
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 2.6e-19 98.2 70 67.1
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 2.6e-19 98.2 66 66.7
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 2.6e-19 98.2 66 66.7
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 3.4e-19 97.8 68 67.6
BcaC08g43490 Brassica carinata HOM05D002732 ORTHO05D002955 3.4e-19 97.8 69 66.7
A06p01290 Brassica napus HOM05D005352 ORTHO05D006371 3.4e-19 97.8 69 66.7
C06p08730 Brassica napus HOM05D005352 ORTHO05D006371 3.4e-19 97.8 69 66.7
BolC6t35949H Brassica oleracea HOM05D005352 ORTHO05D006371 3.4e-19 97.8 69 66.7
BraA06t23355Z Brassica rapa HOM05D005352 ORTHO05D006371 3.4e-19 97.8 69 66.7
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 3.4e-19 97.8 66 66.7
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 4.5e-19 97.4 66 69.7
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 4.5e-19 97.4 63 71.4
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 4.5e-19 97.4 72 68.1
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 4.5e-19 97.4 68 66.2
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 4.5e-19 97.4 69 68.1
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 4.5e-19 97.4 70 71.4
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 4.5e-19 97.4 70 71.4
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 4.5e-19 97.4 70 67.1
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 5.9e-19 97.1 68 72.1
Medtr1g092430 Medicago truncatula HOM05D005352 ORTHO05D006371 5.9e-19 97.1 46 87.0
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 5.9e-19 97.1 70 70.0
TPR.G39025 Trifolium pratense HOM05D005352 ORTHO05D006371 5.9e-19 97.1 51 78.4
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 5.9e-19 97.1 71 69.0
Oeu011684.1 Olea europaea HOM05D005352 ORTHO05D006371 7.7e-19 96.7 52 76.9
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 7.7e-19 96.7 50 80.0
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 7.7e-19 96.7 62 71.0
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 1.0e-18 96.3 70 67.1
CiPaw.11G169400 Carya illinoinensis HOM05D005352 ORTHO05D006371 1.3e-18 95.9 67 65.7
Migut.H01937 Erythranthe guttata HOM05D005352 ORTHO05D006371 1.3e-18 95.9 65 70.8
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 1.3e-18 95.9 69 69.6
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 1.7e-18 95.5 69 63.8
Medtr0271s0050 Medicago truncatula HOM05D005352 ORTHO05D006371 1.7e-18 95.5 75 62.7
Medtr0648s0010 Medicago truncatula HOM05D005352 ORTHO05D006371 1.7e-18 95.5 75 62.7
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 2.9e-18 94.7 64 68.8
CAN.G199.4 Capsicum annuum HOM05D005352 ORTHO05D006371 3.8e-18 94.4 70 62.9
Pp3c15_5560 Physcomitrium patens HOM05D005352 ORTHO05D006371 3.8e-18 94.4 47 87.2
Nn2g14920 Nelumbo nucifera HOM05D005352 ORTHO05D006371 5.0e-18 94.0 67 70.1
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 6.5e-18 93.6 48 81.2
Psat5g287360 Pisum sativum HOM05D005352 ORTHO05D006371 6.5e-18 93.6 59 69.5
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 8.5e-18 93.2 58 70.7
Psat5g244480 Pisum sativum HOM05D005352 ORTHO05D006371 8.5e-18 93.2 59 72.9
Rhsim01G0293100 Rhododendron simsii HOM05D005352 ORTHO05D006371 1.4e-17 92.4 65 66.2
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 1.9e-17 92.0 76 59.2
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 3.2e-17 91.3 73 58.9
Aqoxy7G00104 Aquilegia oxysepala HOM05D005352 ORTHO05D006371 1.2e-16 89.4 43 86.0
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 1.6e-16 89.0 47 76.6
AagrBONN_evm.TU.Sc2ySwM_228.196 Anthoceros agrestis HOM05D005352 ORTHO05D006371 3.6e-16 87.8 53 66.0
Mapoly0075s0017 Marchantia polymorpha HOM05D005352 ORTHO05D006371 3.6e-16 87.8 68 64.7
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 3.6e-16 87.8 76 57.9
ATR0568G005 Amborella trichopoda HOM05D005352 ORTHO05D006371 4.7e-16 87.4 66 60.6
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 2.3e-15 85.1 57 70.2
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 3.0e-15 84.7 54 68.5
ATR0736G058 Amborella trichopoda HOM05D005352 ORTHO05D006371 6.7e-15 83.6 57 63.2
SMO358G0354 Selaginella moellendorffii HOM05D005352 ORTHO05D006371 8.8e-15 83.2 42 78.6
Zm00001eb312990 Zea mays HOM05D005352 ORTHO05D006371 5.7e-14 80.5 75 58.7
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 7.4e-14 80.1 54 64.8
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 7.4e-14 80.1 54 64.8
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 1.1e-12 76.3 74 56.8
MCO06G059 Micromonas commoda HOM05D005352 ORTHO05D006371 1.0e-10 69.7 56 62.5
Cre05.g232850 Chlamydomonas reinhardtii HOM05D005352 ORTHO05D006371 2.2e-10 68.6 56 62.5
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 1.2e-08 62.8 51 56.9
CDE08G1336 Ceratophyllum demersum HOM05D005352 ORTHO05D006371 5.7e-06 53.9 35 74.3


User provided reference genes

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