Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 3.4e-62 241.5 122 100.0
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 5.6e-49 197.6 102 99.0
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 5.4e-36 154.5 102 78.4
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 3.3e-25 118.6 95 65.3
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.0e-18 97.1 108 48.1
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 2.5e-17 92.4 113 45.1
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 5.6e-17 91.3 108 43.5
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 7.3e-17 90.9 101 45.5
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 2.1e-16 89.4 97 47.4
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 3.6e-16 88.6 101 44.6
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 4.8e-16 88.2 108 42.6
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.1e-15 87.0 101 39.6
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 1.4e-15 86.7 101 41.6
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 2.4e-15 85.9 101 43.6
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 2.4e-15 85.9 101 42.6
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 2.4e-15 85.9 116 38.8
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 3.1e-15 85.5 101 40.6
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 3.1e-15 85.5 101 40.6
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 3.1e-15 85.5 101 40.6
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 3.1e-15 85.5 101 40.6
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 3.1e-15 85.5 101 38.6
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 3.1e-15 85.5 101 43.6
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 5.3e-15 84.7 101 41.6
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 5.3e-15 84.7 113 38.9
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 5.3e-15 84.7 101 41.6
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 6.9e-15 84.3 116 38.8
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 6.9e-15 84.3 116 38.8
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 9.0e-15 84.0 101 41.6
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 1.2e-14 83.6 101 41.6
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 1.2e-14 83.6 101 42.6
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 1.2e-14 83.6 101 40.6
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.5e-14 83.2 101 41.6
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 1.5e-14 83.2 101 41.6
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 1.5e-14 83.2 101 40.6
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 2.0e-14 82.8 99 43.4
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 2.0e-14 82.8 108 42.6
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 2.0e-14 82.8 117 39.3
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 3.4e-14 82.0 101 40.6
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 3.4e-14 82.0 101 39.6
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 4.5e-14 81.6 116 37.9
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 4.5e-14 81.6 100 46.0
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 4.5e-14 81.6 101 44.6
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 5.8e-14 81.3 94 44.7
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 5.8e-14 81.3 101 42.6
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 7.6e-14 80.9 101 41.6
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 9.9e-14 80.5 100 42.0
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 1.3e-13 80.1 98 39.8
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 1.3e-13 80.1 99 41.4
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.3e-13 80.1 99 42.4
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.3e-13 80.1 99 42.4
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 2.2e-13 79.3 99 41.4
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 2.9e-13 79.0 121 36.4
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 2.9e-13 79.0 100 42.0
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 2.9e-13 79.0 101 39.6
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 2.9e-13 79.0 101 39.6
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 3.8e-13 78.6 98 40.8
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 4.9e-13 78.2 101 41.6
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 6.4e-13 77.8 114 32.5
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 8.4e-13 77.4 101 37.6
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 8.4e-13 77.4 113 40.7
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 1.1e-12 77.0 100 37.0
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 1.4e-12 76.6 101 38.6
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 1.9e-12 76.3 105 45.7
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 2.4e-12 75.9 101 40.6
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 2.4e-12 75.9 99 38.4
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 2.4e-12 75.9 99 40.4
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 3.2e-12 75.5 101 35.6
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 3.2e-12 75.5 101 39.6
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 4.2e-12 75.1 99 37.4
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 4.2e-12 75.1 117 37.6
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 5.4e-12 74.7 101 39.6
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 7.1e-12 74.3 99 38.4
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 7.1e-12 74.3 101 39.6
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.2e-11 73.6 101 39.6
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 1.2e-11 73.6 117 37.6
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 1.6e-11 73.2 99 39.4
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 1.6e-11 73.2 99 39.4
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 2.1e-11 72.8 89 39.3
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 2.1e-11 72.8 117 36.8
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 2.7e-11 72.4 91 38.5
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 3.5e-11 72.0 99 42.4
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 4.6e-11 71.6 101 33.7
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 6.0e-11 71.2 99 37.4
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 6.0e-11 71.2 101 39.6
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 7.9e-11 70.9 116 35.3
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 7.9e-11 70.9 99 36.4
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 7.9e-11 70.9 100 39.0
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 1.0e-10 70.5 91 40.7
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 1.0e-10 70.5 91 40.7
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 1.8e-10 69.7 101 30.7
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 1.8e-10 69.7 101 36.6
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 1.8e-10 69.7 101 36.6
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 2.3e-10 69.3 100 34.0
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 2.3e-10 69.3 100 34.0
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 3.0e-10 68.9 100 38.0
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 3.0e-10 68.9 99 37.4
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 3.9e-10 68.6 113 31.0
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 3.9e-10 68.6 101 37.6
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 3.9e-10 68.6 99 33.3
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 3.9e-10 68.6 99 33.3
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 3.9e-10 68.6 99 37.4
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 3.9e-10 68.6 88 39.8
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 5.1e-10 68.2 101 32.7
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 6.7e-10 67.8 116 35.3
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 6.7e-10 67.8 91 35.2
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 6.7e-10 67.8 98 36.7
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 8.7e-10 67.4 80 41.2
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 1.1e-09 67.0 102 35.3
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.1e-09 67.0 100 31.0
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 1.1e-09 67.0 103 35.9
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 1.5e-09 66.6 91 36.3
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 1.5e-09 66.6 91 36.3
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.9e-09 66.2 113 32.7
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 2.5e-09 65.9 91 34.1
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.5e-09 65.9 91 34.1
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.5e-09 65.9 91 34.1
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.5e-09 65.9 91 34.1
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.5e-09 65.9 96 38.5
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 3.3e-09 65.5 101 33.7
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.3e-09 65.5 85 32.9
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 4.3e-09 65.1 91 35.2
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 5.6e-09 64.7 101 32.7
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 5.6e-09 64.7 99 35.4
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 7.4e-09 64.3 99 31.3
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 7.4e-09 64.3 91 34.1
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 9.6e-09 63.9 99 30.3
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 1.3e-08 63.5 101 34.7
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.3e-08 63.5 100 29.0
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 1.4e-07 60.1 91 35.2
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 1.8e-07 59.7 101 29.7
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 1.8e-07 59.7 91 31.9
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 3.1e-07 58.9 91 33.0
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 5.3e-07 58.2 102 32.4
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 9.0e-07 57.4 99 31.3
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 9.0e-07 57.4 92 34.8
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 1.5e-06 56.6 102 32.4
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 2.6e-06 55.8 99 30.3
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 5.8e-06 54.7 100 31.0
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 7.6e-06 54.3 90 34.4


User provided reference genes

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