Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 1.7e-117 426.0 219 100.0
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 1.8e-106 389.4 219 94.5
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 1.1e-44 184.1 209 59.3
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 4.8e-43 178.7 209 56.5
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 1.2e-41 174.1 209 56.9
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 1.5e-41 173.7 198 57.1
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 3.4e-41 172.6 210 56.7
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 5.9e-41 171.8 213 55.4
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 2.9e-40 169.5 209 55.0
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 6.5e-40 168.3 209 56.5
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 8.5e-40 167.9 209 56.5
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 1.1e-39 167.5 210 55.7
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.1e-39 167.5 214 53.7
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.4e-39 167.2 212 54.7
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 2.5e-39 166.4 210 55.2
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 2.5e-39 166.4 210 54.8
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 7.2e-39 164.9 207 52.7
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 1.6e-38 163.7 212 53.3
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 3.6e-38 162.5 200 55.5
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 3.6e-38 162.5 212 53.3
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 4.7e-38 162.2 210 54.8
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 4.7e-38 162.2 214 53.7
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 1.0e-37 161.0 204 54.9
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 3.0e-37 159.5 188 54.3
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 3.0e-37 159.5 188 54.3
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 5.2e-37 158.7 209 53.1
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 2.0e-36 156.8 210 52.9
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 1.3e-35 154.1 200 54.5
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 2.2e-35 153.3 187 56.7
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 2.8e-35 152.9 208 54.8
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 3.7e-35 152.5 192 53.6
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 4.8e-35 152.1 210 51.4
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 8.2e-35 151.4 215 50.2
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 1.1e-34 151.0 208 51.4
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 2.4e-34 149.8 213 51.2
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 3.1e-34 149.4 213 50.2
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 4.1e-34 149.1 212 50.9
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 5.3e-34 148.7 195 53.8
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 1.2e-33 147.5 231 50.6
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 5.9e-33 145.2 192 53.1
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 5.9e-33 145.2 192 53.1
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 5.9e-33 145.2 214 49.1
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 7.7e-33 144.8 196 52.0
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 7.7e-33 144.8 223 48.4
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 1.7e-32 143.7 207 47.3
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 2.9e-32 142.9 216 48.1
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 2.9e-32 142.9 216 48.1
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.9e-32 142.9 193 52.3
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.9e-32 142.9 193 52.8
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 3.8e-32 142.5 200 47.5
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 1.1e-31 141.0 209 51.2
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 1.5e-31 140.6 197 50.3
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.9e-31 140.2 193 51.8
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.9e-31 140.2 128 64.8
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 2.5e-31 139.8 217 50.7
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 2.5e-31 139.8 248 44.8
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 3.2e-31 139.4 199 51.3
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 5.5e-31 138.7 222 48.6
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 3.6e-30 136.0 200 47.5
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 3.6e-30 136.0 221 46.6
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 1.8e-29 133.7 233 44.2
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 2.3e-29 133.3 198 48.0
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 2.3e-29 133.3 201 46.8
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 3.0e-29 132.9 192 51.6
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 6.7e-29 131.7 186 51.1
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 8.8e-29 131.3 200 47.5
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 1.2e-28 131.0 192 50.0
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 2.0e-28 130.2 305 39.0
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 2.0e-28 130.2 212 44.3
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 2.6e-28 129.8 197 50.8
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 4.4e-28 129.0 208 43.3
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 4.4e-28 129.0 169 50.3
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 4.4e-28 129.0 189 49.7
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 1.3e-27 127.5 240 41.2
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 2.2e-27 126.7 162 51.2
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 2.2e-27 126.7 199 48.2
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 2.8e-27 126.3 220 40.0
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 3.7e-27 125.9 263 41.4
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 3.7e-27 125.9 139 55.4
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 4.8e-27 125.6 200 49.0
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 8.2e-27 124.8 217 41.9
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 1.4e-26 124.0 124 62.1
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 2.4e-26 123.2 216 45.4
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 2.4e-26 123.2 215 41.9
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 4.1e-26 122.5 216 40.7
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 1.2e-25 120.9 219 41.6
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 1.2e-25 120.9 197 46.7
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 2.0e-25 120.2 223 39.0
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 2.7e-25 119.8 210 41.4
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 4.5e-25 119.0 215 45.6
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 7.7e-25 118.2 199 44.2
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.3e-24 117.5 212 42.5
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.7e-24 117.1 272 39.7
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.7e-24 117.1 272 39.7
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 2.2e-24 116.7 222 40.5
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 2.9e-24 116.3 125 60.8
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 2.9e-24 116.3 125 60.8
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 9.4e-23 111.3 125 56.0
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 3.6e-22 109.4 125 56.8
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 4.7e-22 109.0 125 57.6
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 1.0e-21 107.8 234 40.2
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 1.4e-21 107.5 125 56.8
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 4.0e-21 105.9 125 53.6
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 4.0e-21 105.9 125 54.4
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 2.0e-20 103.6 121 57.0
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 2.6e-20 103.2 215 42.8
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 3.4e-20 102.8 211 43.1
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 7.5e-20 101.7 238 36.1
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 7.5e-20 101.7 210 42.9
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 3.7e-19 99.4 125 50.4
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 4.8e-19 99.0 184 42.4
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 1.4e-18 97.4 267 33.3
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 1.4e-18 97.4 194 39.7
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 1.8e-18 97.1 111 55.9
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 5.4e-18 95.5 129 45.0
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 5.4e-18 95.5 111 51.4
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 7.0e-18 95.1 188 42.6
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 7.7e-17 91.7 124 50.8
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 2.9e-16 89.7 196 41.3
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 6.5e-16 88.6 123 49.6
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 1.9e-15 87.0 187 40.1
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 1.2e-14 84.3 128 46.1
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 2.8e-14 83.2 193 37.3
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 6.8e-13 78.6 226 33.2
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 6.8e-13 78.6 215 36.7
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 1.2e-12 77.8 131 40.5
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 1.5e-12 77.4 131 40.5
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 4.4e-12 75.9 131 39.7
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 4.4e-12 75.9 102 49.0
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 7.5e-12 75.1 293 32.8
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.7e-11 73.9 108 44.4
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.7e-11 73.9 108 44.4
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.7e-11 73.9 108 44.4
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 2.8e-11 73.2 56 71.4
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 6.3e-11 72.0 132 40.9
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 4.1e-10 69.3 128 38.3
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 4.3e-07 59.3 76 50.0


User provided reference genes

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