Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 7.1e-234 813.5 402 100.0
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 1.3e-232 809.3 402 99.5
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 5.3e-221 770.8 402 93.3
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 6.9e-221 770.4 402 93.0
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 1.2e-220 769.6 402 93.0
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 4.4e-220 767.7 402 91.5
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 9.9e-220 766.5 402 92.3
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 8.4e-219 763.5 402 91.5
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 8.4e-219 763.5 402 91.5
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 7.1e-218 760.4 402 91.3
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 9.3e-218 760.0 402 91.3
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 3.5e-217 758.1 402 90.8
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 6.0e-217 757.3 402 90.8
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 7.9e-217 756.9 402 90.3
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 1.0e-216 756.5 402 90.5
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 1.3e-216 756.1 402 90.0
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 1.7e-216 755.7 402 90.0
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 2.3e-216 755.4 416 89.4
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 6.6e-216 753.8 416 89.2
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 1.1e-215 753.1 402 90.0
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 1.1e-215 753.1 402 90.0
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 1.1e-215 753.1 402 90.0
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 1.5e-215 752.7 402 89.6
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 1.9e-215 752.3 402 90.3
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 2.5e-215 751.9 401 90.0
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 3.3e-215 751.5 402 90.0
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 4.3e-215 751.1 402 90.3
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 9.6e-215 750.0 402 89.3
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 9.6e-215 750.0 402 89.3
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 1.3e-214 749.6 402 89.3
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 1.6e-214 749.2 402 88.8
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 1.6e-214 749.2 402 89.6
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 1.6e-214 749.2 402 89.3
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 2.1e-214 748.8 402 89.6
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 2.1e-214 748.8 402 90.0
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 2.1e-214 748.8 402 89.6
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 2.1e-214 748.8 402 89.6
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 2.8e-214 748.4 402 89.8
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 2.8e-214 748.4 402 89.6
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 3.6e-214 748.0 402 89.1
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 4.8e-214 747.7 402 89.1
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 4.8e-214 747.7 402 89.3
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 6.2e-214 747.3 402 89.3
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 6.2e-214 747.3 402 89.3
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 6.2e-214 747.3 402 89.1
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 8.1e-214 746.9 402 89.1
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 8.1e-214 746.9 402 89.1
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 1.1e-213 746.5 402 89.6
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 1.8e-213 745.7 402 89.6
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 1.8e-213 745.7 402 89.6
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 2.4e-213 745.3 402 89.1
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 2.4e-213 745.3 402 89.1
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 2.4e-213 745.3 402 88.8
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 3.1e-213 745.0 402 88.6
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 4.0e-213 744.6 402 89.3
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 5.3e-213 744.2 402 89.1
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 5.3e-213 744.2 402 88.8
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 6.9e-213 743.8 402 88.8
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 9.0e-213 743.4 402 89.1
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 9.0e-213 743.4 402 89.1
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 1.2e-212 743.0 402 89.8
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 2.0e-212 742.3 402 89.1
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 7.6e-212 740.3 402 88.3
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 1.3e-211 739.6 402 88.3
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 2.2e-211 738.8 402 88.3
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 2.2e-211 738.8 402 88.3
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 2.9e-211 738.4 402 88.3
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 2.9e-211 738.4 402 88.8
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 4.9e-211 737.6 402 87.6
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 6.4e-211 737.3 402 88.3
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 1.4e-210 736.1 402 88.8
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 1.9e-210 735.7 402 88.8
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 4.2e-210 734.6 402 88.6
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 9.3e-210 733.4 402 86.8
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 2.1e-209 732.3 402 87.3
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 2.7e-209 731.9 402 88.3
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 1.0e-208 729.9 402 87.8
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 1.3e-208 729.6 402 87.1
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 2.3e-208 728.8 402 88.1
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 1.9e-207 725.7 402 86.8
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 1.9e-207 725.7 402 86.6
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 3.3e-207 724.9 411 85.6
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 3.3e-207 724.9 438 81.3
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 7.4e-207 723.8 402 85.6
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 7.4e-207 723.8 402 85.6
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 7.4e-207 723.8 402 85.6
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 9.6e-207 723.4 402 86.3
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 9.6e-207 723.4 402 85.6
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 9.6e-207 723.4 402 85.6
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 9.6e-207 723.4 402 85.8
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.3e-206 723.0 402 86.8
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 1.6e-206 722.6 417 84.7
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 1.6e-206 722.6 402 86.3
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 6.2e-206 720.7 402 85.8
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 8.1e-206 720.3 402 86.1
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 1.1e-205 719.9 441 81.2
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 1.4e-205 719.5 402 85.1
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 1.4e-205 719.5 402 85.1
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 1.8e-205 719.2 402 84.8
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 1.8e-205 719.2 402 84.6
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 3.1e-205 718.4 402 84.8
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 4.0e-205 718.0 402 84.8
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 4.0e-205 718.0 402 84.8
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 4.0e-205 718.0 402 84.8
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 5.3e-205 717.6 402 85.3
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 6.9e-205 717.2 402 84.8
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 1.2e-204 716.5 402 84.6
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 1.5e-204 716.1 402 84.6
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 1.5e-204 716.1 429 82.8
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 4.5e-204 714.5 398 85.4
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 1.3e-203 713.0 402 86.1
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 8.4e-203 710.3 402 86.8
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 1.4e-202 709.5 402 84.3
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 7.1e-202 707.2 400 84.0
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 7.1e-202 707.2 402 85.1
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 9.3e-202 706.8 401 84.0
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 1.6e-201 706.1 419 84.2
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 8.7e-200 700.3 402 85.3
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 1.5e-196 689.5 402 84.3
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 1.5e-196 689.5 402 82.6
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 1.0e-192 676.8 375 85.9
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 8.7e-192 673.7 361 91.1
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 2.5e-191 672.2 357 89.9
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 3.4e-188 661.8 402 79.1
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 1.3e-187 659.8 360 86.9
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 4.2e-186 654.8 402 77.9
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 7.9e-185 650.6 402 77.9
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 3.0e-184 648.7 402 76.9
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 4.2e-178 628.2 402 77.6
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 3.6e-177 625.2 401 73.6
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 3.0e-176 622.1 334 89.8
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 1.5e-175 619.8 340 87.6
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 8.2e-174 614.0 402 71.6
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 4.1e-173 611.7 402 71.4
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 2.2e-171 605.9 402 75.1
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 3.6e-169 598.6 402 71.1
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 6.1e-169 597.8 403 71.0
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 3.3e-167 592.0 403 69.7
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 6.1e-161 571.2 402 68.9
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 1.8e-160 569.7 401 66.3
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 5.9e-156 554.7 403 66.3
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 3.0e-152 542.3 289 89.6
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 1.2e-140 503.8 403 66.0
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 5.6e-138 495.0 419 62.8
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 2.7e-132 476.1 402 62.4
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 8.9e-128 461.1 259 85.3
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 9.5e-122 441.0 394 54.6
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 2.4e-117 426.4 395 54.7
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 4.0e-112 409.1 276 73.6
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 3.1e-104 382.9 229 81.2
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 1.3e-99 367.5 219 81.3
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 3.0e-99 366.3 219 79.9
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 5.1e-99 365.5 219 80.4
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 4.8e-81 305.8 160 91.2
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.1e-80 304.7 300 53.7
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 7.9e-76 288.5 163 85.9
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 2.5e-53 213.8 116 88.8
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 6.3e-33 146.0 86 82.6
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 8.3e-33 145.6 351 28.5
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 1.7e-30 137.9 351 28.8
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 8.3e-17 92.4 47 89.4
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 9.5e-13 79.0 72 58.3
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 8.1e-12 75.9 316 23.4
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 1.4e-11 75.1 45 71.1


User provided reference genes

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