Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 5.0e-202 707.6 368 100.0
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 8.6e-194 680.2 368 96.5
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 6.8e-159 564.3 339 84.1
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 1.3e-154 550.1 343 81.0
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 6.6e-154 547.7 344 81.7
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 1.5e-153 546.6 341 82.7
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 9.6e-153 543.9 315 87.0
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 1.2e-152 543.5 350 80.9
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 3.6e-152 542.0 350 80.6
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 4.7e-152 541.6 336 81.2
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 1.4e-151 540.0 345 80.3
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 1.8e-151 539.7 347 80.4
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 3.1e-151 538.9 345 80.6
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 3.1e-151 538.9 344 79.1
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 9.0e-151 537.3 348 80.2
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 9.0e-151 537.3 353 77.9
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 9.0e-151 537.3 360 78.6
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 1.2e-150 537.0 350 79.1
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 1.2e-150 537.0 338 81.1
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 1.5e-150 536.6 345 78.8
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 2.6e-150 535.8 359 78.6
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 3.4e-150 535.4 362 76.8
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 4.4e-150 535.0 367 74.9
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 5.8e-150 534.6 336 81.2
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 7.6e-150 534.3 336 81.2
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 9.9e-150 533.9 339 78.8
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 9.9e-150 533.9 347 79.0
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 1.3e-149 533.5 339 79.4
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 1.3e-149 533.5 341 80.4
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 1.7e-149 533.1 337 81.0
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 1.7e-149 533.1 350 78.3
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 1.7e-149 533.1 341 80.4
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 2.9e-149 532.3 347 79.0
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 2.9e-149 532.3 346 79.2
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 1.1e-148 530.4 346 78.0
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 1.4e-148 530.0 336 81.0
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 3.2e-148 528.9 331 82.5
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 3.2e-148 528.9 340 79.7
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 3.2e-148 528.9 318 83.3
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 4.2e-148 528.5 339 79.6
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 4.2e-148 528.5 338 80.2
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 9.3e-148 527.3 345 78.0
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 1.2e-147 526.9 340 78.8
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 1.2e-147 526.9 368 75.0
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 1.2e-147 526.9 336 80.4
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 1.6e-147 526.6 337 80.1
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 2.7e-147 525.8 336 80.4
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 4.6e-147 525.0 340 78.5
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 6.0e-147 524.6 354 77.4
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 7.8e-147 524.2 323 81.7
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 1.0e-146 523.9 340 78.5
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 1.7e-146 523.1 337 81.0
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 2.3e-146 522.7 351 78.3
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 6.6e-146 521.2 349 77.4
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 8.7e-146 520.8 338 79.0
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 8.7e-146 520.8 336 79.2
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 4.3e-145 518.5 339 79.1
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 4.3e-145 518.5 339 79.1
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 4.3e-145 518.5 339 79.1
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 7.3e-145 517.7 354 76.6
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 9.6e-145 517.3 384 71.9
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 1.3e-144 516.9 339 78.8
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 1.6e-144 516.5 347 77.2
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 2.8e-144 515.8 346 76.9
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 2.8e-144 515.8 405 69.1
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 3.6e-144 515.4 344 76.7
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 8.1e-144 514.2 372 73.4
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 8.1e-144 514.2 320 79.7
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 1.4e-143 513.5 349 75.1
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 1.8e-143 513.1 349 75.4
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 3.8e-141 505.4 311 81.4
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 3.8e-141 505.4 353 74.2
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 6.4e-141 504.6 350 72.9
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 8.4e-141 504.2 315 79.7
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 1.4e-140 503.4 311 80.7
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 2.4e-140 502.7 308 82.1
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 5.1e-138 495.0 311 79.4
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 1.9e-137 493.0 313 76.7
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 1.6e-136 490.0 364 70.6
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 1.8e-135 486.5 287 86.1
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 4.0e-135 485.3 386 68.4
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 7.6e-134 481.1 314 77.1
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 5.5e-132 474.9 313 77.3
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 7.1e-132 474.6 350 72.0
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 9.3e-132 474.2 307 77.9
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 3.3e-129 465.7 341 72.1
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 4.3e-129 465.3 339 74.3
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 1.5e-126 456.8 331 73.1
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 1.4e-124 450.3 313 71.9
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 2.5e-124 449.5 401 63.1
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 2.5e-124 449.5 340 71.2
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 3.2e-124 449.1 302 75.2
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 3.5e-123 445.7 295 77.3
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 7.4e-121 438.0 346 68.2
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 3.7e-120 435.6 282 77.7
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 6.3e-120 434.9 297 74.7
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 5.5e-116 421.8 313 67.7
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 1.1e-113 414.1 336 66.7
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 2.8e-112 409.5 242 86.4
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 6.3e-112 408.3 345 65.2
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 8.2e-112 407.9 298 68.5
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 1.4e-108 397.1 314 66.2
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 6.7e-106 388.3 255 75.3
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 1.0e-98 364.4 221 82.4
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 3.2e-92 342.8 233 75.1
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 4.0e-90 335.9 306 58.8
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 7.2e-84 315.1 230 68.3
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 2.3e-82 310.1 308 55.2
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 8.8e-82 308.1 303 54.1
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 5.7e-81 305.4 192 81.2
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 5.4e-79 298.9 187 80.2
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 2.8e-75 286.6 220 66.8
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 2.7e-70 270.0 167 83.8
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 7.3e-68 261.9 231 59.3
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 2.6e-65 253.4 345 47.0
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 6.2e-59 232.3 151 75.5
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 4.4e-57 226.1 287 47.0
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 1.6e-54 217.6 160 69.4
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 1.9e-47 194.1 143 65.0
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 1.2e-46 191.4 242 50.8
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 9.2e-39 165.2 145 57.9
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 2.1e-38 164.1 280 34.6
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 3.3e-36 156.8 122 63.9
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.6e-35 154.5 265 39.2
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 2.4e-34 150.6 266 37.2
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 3.1e-34 150.2 100 69.0
Oeu045874.1 Olea europaea HOM05D005313 ORTHO05D006317 2.6e-33 147.1 140 62.9
TPR.G36891 Trifolium pratense HOM05D005313 ORTHO05D006317 3.9e-29 133.3 101 72.3
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 8.7e-29 132.1 85 70.6
Glyma.07G165500 Glycine max HOM05D005313 ORTHO05D006317 6.2e-27 125.9 81 81.5
TPR.G36912 Trifolium pratense HOM05D005313 ORTHO05D006317 1.0e-21 108.6 92 65.2
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 2.3e-21 107.5 109 56.9
CAN.G1020.2 Capsicum annuum HOM05D005313 ORTHO05D006317 4.3e-20 103.2 111 54.1
Aa31LG11G8270 Aethionema arabicum HOM05D005313 ORTHO05D006317 4.0e-18 96.7 88 63.6
MBI06_g07791_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 9.0e-18 95.5 59 84.7
CsaV3_UNG236470 Cucumis sativus L. HOM05D005313 ORTHO05D006317 3.4e-17 93.6 67 77.6
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 6.4e-16 89.4 62 67.7
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 1.1e-15 88.6 54 70.4
BcaC06g31315 Brassica carinata HOM05D005313 ORTHO05D006317 1.6e-14 84.7 55 72.7
Actinidia01955 Actinidia chinensis HOM05D005313 ORTHO05D006317 9.0e-10 68.9 43 67.4
AagrBONN_evm.TU.Sc2ySwM_117.3801 Anthoceros agrestis HOM05D005313 ORTHO05D006317 3.8e-08 63.5 58 56.9


User provided reference genes

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