Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 1.9e-173 612.5 315 100.0
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 2.4e-168 595.5 315 97.8
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 1.2e-111 407.1 317 67.5
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 8.6e-110 401.0 321 67.0
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 2.5e-109 399.4 316 66.5
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 6.1e-108 394.8 298 68.5
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 2.9e-105 386.0 319 65.5
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 4.1e-104 382.1 277 70.8
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 7.0e-104 381.3 281 69.4
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 1.2e-103 380.6 310 65.5
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 1.2e-103 380.6 254 75.6
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 4.6e-103 378.6 315 62.9
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 5.9e-103 378.3 277 69.7
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 1.0e-102 377.5 290 66.6
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 1.3e-102 377.1 310 64.8
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 2.3e-102 376.3 319 63.6
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 3.0e-102 375.9 300 64.7
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 3.0e-102 375.9 254 74.0
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 3.0e-102 375.9 290 66.2
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 3.0e-102 375.9 290 66.2
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 3.9e-102 375.6 315 63.8
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 1.1e-101 374.0 315 63.5
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 1.5e-101 373.6 304 64.1
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 1.9e-101 373.2 316 60.8
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 5.6e-101 371.7 304 64.1
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 9.5e-101 370.9 255 72.5
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 2.1e-100 369.8 266 70.3
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 2.8e-100 369.4 303 64.0
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 6.2e-100 368.2 284 66.2
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 6.2e-100 368.2 313 62.9
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 1.4e-99 367.1 294 66.0
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.8e-99 366.7 279 67.0
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 1.8e-99 366.7 304 63.8
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 2.3e-99 366.3 300 65.0
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 2.3e-99 366.3 265 70.6
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 3.1e-99 365.9 301 63.8
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 3.1e-99 365.9 263 69.6
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 4.0e-99 365.5 250 73.6
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 3.4e-98 362.5 272 68.0
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 4.4e-98 362.1 302 62.9
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 4.4e-98 362.1 315 61.9
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 7.5e-98 361.3 300 65.3
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 9.8e-98 360.9 300 63.3
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 1.7e-97 360.1 257 70.4
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 2.9e-97 359.4 299 62.2
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 2.9e-97 359.4 262 71.0
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 3.7e-97 359.0 311 62.4
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 3.7e-97 359.0 323 60.7
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 8.3e-97 357.8 268 66.4
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 8.3e-97 357.8 299 62.9
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 1.9e-96 356.7 299 62.9
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 2.4e-96 356.3 273 68.1
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 2.4e-96 356.3 262 69.8
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 4.1e-96 355.5 287 64.8
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 1.6e-95 353.6 256 69.5
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 1.6e-95 353.6 240 73.3
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 2.0e-95 353.2 306 63.4
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 2.0e-95 353.2 306 63.4
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 7.8e-95 351.3 315 60.6
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 7.8e-95 351.3 309 61.8
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 1.7e-94 350.1 298 63.1
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 3.0e-94 349.4 303 60.7
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 6.6e-94 348.2 299 60.2
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 8.6e-94 347.8 298 61.4
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 1.5e-93 347.1 309 61.2
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 7.3e-93 344.7 315 59.0
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 9.5e-93 344.4 302 59.9
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 9.5e-93 344.4 257 65.4
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 1.2e-92 344.0 303 59.7
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 1.2e-92 344.0 300 60.0
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 1.2e-92 344.0 287 62.4
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 1.2e-92 344.0 309 60.8
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 2.8e-92 342.8 278 61.2
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 2.8e-92 342.8 262 64.9
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 8.1e-92 341.3 286 63.3
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 8.1e-92 341.3 287 64.1
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 8.1e-92 341.3 266 63.9
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 1.1e-91 340.9 310 58.7
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 1.1e-91 340.9 310 58.7
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 1.4e-91 340.5 312 59.0
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 1.4e-91 340.5 310 59.0
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 1.8e-91 340.1 301 59.1
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 3.1e-91 339.3 304 58.6
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 3.1e-91 339.3 257 64.6
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 4.0e-91 339.0 297 60.9
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 6.8e-91 338.2 261 65.1
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 6.8e-91 338.2 258 64.7
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 6.8e-91 338.2 258 64.7
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 6.8e-91 338.2 257 64.2
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 8.9e-91 337.8 301 58.5
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 8.9e-91 337.8 312 58.0
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 8.9e-91 337.8 251 65.3
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 1.2e-90 337.4 284 62.0
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 1.2e-90 337.4 297 60.6
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 1.5e-90 337.0 279 63.8
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 1.5e-90 337.0 372 51.3
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 2.0e-90 336.7 238 69.7
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 2.6e-90 336.3 297 60.6
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 4.4e-90 335.5 306 57.8
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 1.3e-89 334.0 254 65.0
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 6.4e-89 331.6 316 56.0
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 3.2e-88 329.3 318 56.0
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 3.2e-88 329.3 238 68.1
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 4.1e-88 328.9 268 60.8
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 7.1e-88 328.2 320 57.5
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 1.3e-86 323.9 299 58.9
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 3.0e-86 322.8 314 55.7
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 3.3e-85 319.3 239 66.9
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 9.5e-85 317.8 283 57.2
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 2.8e-84 316.2 297 57.2
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 3.6e-84 315.8 284 62.0
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 1.1e-83 314.3 297 56.9
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 2.4e-83 313.2 305 54.1
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 2.0e-82 310.1 265 60.8
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 2.6e-82 309.7 249 63.1
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 1.7e-81 307.0 310 55.2
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 6.4e-81 305.1 221 68.8
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 1.2e-79 300.8 373 46.4
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 1.6e-79 300.4 257 60.7
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 2.1e-79 300.1 286 56.6
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 2.1e-79 300.1 242 62.0
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 7.8e-79 298.1 346 52.0
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 6.6e-78 295.0 356 51.4
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 7.3e-77 291.6 319 51.7
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 2.1e-76 290.0 248 58.9
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 1.1e-75 287.7 242 61.6
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 6.9e-75 285.0 296 54.1
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 2.6e-74 283.1 254 57.1
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 6.4e-73 278.5 247 55.9
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 6.4e-73 278.5 229 63.3
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 8.4e-73 278.1 265 58.9
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 8.4e-65 251.5 219 58.9
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.1e-61 241.1 249 49.0
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.4e-59 234.2 291 45.7
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 3.1e-59 233.0 456 36.2
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 6.9e-59 231.9 175 65.1
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 4.5e-58 229.2 238 52.1
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 5.1e-54 215.7 221 53.8
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 4.3e-53 212.6 235 46.4
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 1.3e-52 211.1 192 59.9
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 2.8e-52 209.9 316 41.1
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 1.1e-51 208.0 246 45.9
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 2.7e-47 193.4 145 66.9
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 2.7e-47 193.4 135 69.6
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 1.1e-40 171.4 191 46.6
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 4.3e-37 159.5 126 64.3
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 1.0e-30 138.3 162 48.1
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 6.1e-23 112.5 107 50.5
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 1.5e-21 107.8 76 72.4
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 1.8e-19 100.9 90 56.7
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 1.8e-14 84.3 193 32.6
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 5.2e-14 82.8 72 61.1
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 5.7e-13 79.3 72 52.8
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 1.1e-11 75.1 70 44.3
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 1.0e-09 68.6 52 75.0
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 8.5e-09 65.5 52 59.6
Hund21439 Selenicereus undatus HOM05D002234 ORTHO05D002254 8.0e-07 58.9 281 25.6
DCAR_027858 Daucus carota HOM05D002234 ORTHO05D002254 4.0e-06 56.6 206 26.7
C01p35130 Brassica napus HOM05D027121 ORTHO05D039971 5.2e-06 56.2 103 34.0
HPP92_002996 Vanilla planifolia HOM05D004474 ORTHO05D432408 6.8e-06 55.8 43 76.7
BcaC09g49569 Brassica carinata HOM05D027121 ORTHO05D094000 8.8e-06 55.5 103 33.0


User provided reference genes

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