Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G1989 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 4893.9 2450 100.0
PSO135G0708 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 4592.7 2460 93.7
Dinv34221 Davidia involucrata HOM05D004435 ORTHO05D005103 0.0e+00 2460.6 2578 52.3
Aqoxy1G03073 Aquilegia oxysepala HOM05D004435 ORTHO05D005103 0.0e+00 2442.5 2542 52.0
Nn1g00298 Nelumbo nucifera HOM05D004435 ORTHO05D005103 0.0e+00 2425.2 2602 52.4
MBI06_g44136_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 0.0e+00 2409.4 2597 51.4
Atru.chr5.694 Acer truncatum HOM05D004435 ORTHO05D005103 0.0e+00 2380.1 2581 50.3
CSS0028718 Camellia sinensis var. sinensis HOM05D004435 ORTHO05D005103 0.0e+00 2373.6 2593 50.8
RcHm_v2.0_Chr1g0360111 Rosa chinensis HOM05D004435 ORTHO05D005103 0.0e+00 2358.2 2577 50.8
FvH4_7g16880 Fragaria vesca HOM05D004435 ORTHO05D005103 0.0e+00 2357.4 2566 50.4
FAN06G0620 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2350.5 2566 50.3
QL08p045721 Quercus lobata HOM05D004435 ORTHO05D005103 0.0e+00 2348.5 2652 48.9
MD01G1083800 Malus domestica HOM05D004435 ORTHO05D005103 0.0e+00 2347.4 2562 50.4
Potri.002G173300 Populus trichocarpa HOM05D004435 ORTHO05D005103 0.0e+00 2343.5 2574 49.5
FAN03G2945 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2341.2 2573 50.2
FAN06G2443 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2337.8 2566 50.1
FAN10G3841 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2335.8 2565 50.2
FAN10G0386 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2335.1 2565 50.2
Duzib133G0905 Durio zibethinus HOM05D004435 ORTHO05D005103 0.0e+00 2333.5 2563 50.2
Ciclev10018429m.g Citrus clementina HOM05D004435 ORTHO05D005103 0.0e+00 2332.4 2553 49.8
Cfa003785 Carpinus fangiana HOM05D004435 ORTHO05D005103 0.0e+00 2332.0 2577 50.3
CiPaw.01G077800 Carya illinoinensis HOM05D004435 ORTHO05D005103 0.0e+00 2325.4 2559 49.6
Sabra02G0140000 Salix brachista HOM05D004435 ORTHO05D005103 0.0e+00 2313.1 2577 49.2
Actinidia20252 Actinidia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 2284.2 2518 50.4
Manes.01G244500 Manihot esculenta HOM05D004435 ORTHO05D005103 0.0e+00 2282.7 2531 49.7
Rhsim07G0003000 Rhododendron simsii HOM05D004435 ORTHO05D005103 0.0e+00 2277.3 2562 49.6
Gorai.007G109900 Gossypium raimondii HOM05D004435 ORTHO05D005103 0.0e+00 2260.0 2598 48.6
COL.COLO4_06228 Corchorus olitorius HOM05D004435 ORTHO05D005103 0.0e+00 2259.6 2563 49.0
Gohir.D11G102800 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 2254.2 2598 48.6
Prupe.2G190800 Prunus persica HOM05D004435 ORTHO05D005103 0.0e+00 2247.2 2422 50.7
Gohir.A11G098100 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 2246.5 2591 48.4
CANSAT56G0169 Cannabis sativa HOM05D004435 ORTHO05D005103 0.0e+00 2236.8 2563 48.7
vmacro04283 Vaccinium macrocarpon HOM05D004435 ORTHO05D005103 0.0e+00 2191.0 2651 46.8
TWI14G0481 Tripterygium wilfordii HOM05D004435 ORTHO05D005103 0.0e+00 2184.8 2555 47.6
CsaV3_3G007940 Cucumis sativus L. HOM05D004435 ORTHO05D005103 0.0e+00 2176.7 2531 48.2
Haze_15676 Corylus avellana HOM05D004435 ORTHO05D005103 0.0e+00 2173.7 2606 47.8
MELO3C006012.2 Cucumis melo HOM05D004435 ORTHO05D005103 0.0e+00 2162.5 2529 48.1
Lj3g0005802 Lotus japonicus HOM05D004435 ORTHO05D005103 0.0e+00 2162.1 2570 47.4
Ca_23520_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 0.0e+00 2161.7 2562 47.5
Medtr8g027425 Medicago truncatula HOM05D004435 ORTHO05D005103 0.0e+00 2152.1 2526 47.2
Psat4g214760 Pisum sativum HOM05D004435 ORTHO05D005103 0.0e+00 2134.4 2561 47.3
Glyma.07G054500 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 2130.5 2564 47.2
arahy.Tifrunner.gnm1.ann1.VXNL4X Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 2127.8 2548 46.9
Solyc01g096110.3 Solanum lycopersicum HOM05D004435 ORTHO05D005103 0.0e+00 2122.8 2558 46.9
Lalb_Chr10g0100641 Lupinus albus HOM05D004435 ORTHO05D005103 0.0e+00 2122.4 2546 47.4
arahy.Tifrunner.gnm1.ann1.Y0VUSY Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 2121.3 2546 46.7
Peaxi162Scf00345g00125 Petunia axillaris HOM05D004435 ORTHO05D005103 0.0e+00 2120.9 2581 46.9
Sopen01g039830 Solanum pennellii HOM05D004435 ORTHO05D005103 0.0e+00 2118.6 2561 46.8
CAN.G1415.18 Capsicum annuum HOM05D004435 ORTHO05D005103 0.0e+00 2112.4 2551 46.5
Sed0001978 Sechium edule HOM05D004435 ORTHO05D005103 0.0e+00 2101.2 2562 47.2
VMungo0331G1532 Vigna mungo HOM05D004435 ORTHO05D005103 0.0e+00 2089.7 2565 46.7
PGR044G1747 Punica granatum HOM05D004435 ORTHO05D005103 0.0e+00 2057.7 2546 45.6
ClCG05G000720 Citrullus lanatus HOM05D004435 ORTHO05D005103 0.0e+00 2045.4 2557 46.3
GSVIVG01027171001 Vitis vinifera HOM05D004435 ORTHO05D005103 0.0e+00 2033.1 2489 47.2
Cc02_g39580 Coffea canephora HOM05D004435 ORTHO05D005103 0.0e+00 2025.8 2585 45.5
Eucgr.E00041 Eucalyptus grandis HOM05D004435 ORTHO05D005103 0.0e+00 1999.2 2563 44.3
THA.LOC104802083 Tarenaya hassleriana HOM05D004435 ORTHO05D005103 0.0e+00 1996.9 2503 45.5
Migut.B01890 Erythranthe guttata HOM05D004435 ORTHO05D005103 0.0e+00 1996.1 2545 44.8
Phvul.010G115000 Phaseolus vulgaris HOM05D004435 ORTHO05D005103 0.0e+00 1976.4 2408 46.5
AUR62004511 Chenopodium quinoa HOM05D004435 ORTHO05D005103 0.0e+00 1971.4 2532 45.6
HanXRQChr17g0563351 Helianthus annuus HOM05D004435 ORTHO05D005103 0.0e+00 1969.9 2487 45.5
EL10Ac1g00244 Beta vulgaris HOM05D004435 ORTHO05D005103 0.0e+00 1968.4 2576 45.0
Ah.05g179380 Amaranthus hybridus HOM05D004435 ORTHO05D005103 0.0e+00 1940.6 2562 44.3
Thhalv10001279m.g Eutrema salsugineum HOM05D004435 ORTHO05D005103 0.0e+00 1927.5 2537 44.1
AL4G45990 Arabidopsis lyrata HOM05D004435 ORTHO05D005103 0.0e+00 1926.4 2537 44.1
AT2G46560 Arabidopsis thaliana HOM05D004435 ORTHO05D005103 0.0e+00 1916.4 2555 43.5
BolC4t21789H Brassica oleracea HOM05D004435 ORTHO05D005103 0.0e+00 1890.9 2510 43.7
C04p01360 Brassica napus HOM05D004435 ORTHO05D005103 0.0e+00 1890.5 2510 43.6
A05p01210 Brassica napus HOM05D004435 ORTHO05D005103 0.0e+00 1888.2 2510 43.7
ECA234G2843 Erigeron canadensis HOM05D004435 ORTHO05D005103 0.0e+00 1880.9 2343 46.9
BraA05t19122Z Brassica rapa HOM05D004435 ORTHO05D005103 0.0e+00 1874.4 2509 43.5
Sp4g28610 Schrenkiella parvula HOM05D004435 ORTHO05D005103 0.0e+00 1865.5 2537 43.1
Lsat_1_v5_gn_4_33701 Lactuca sativa HOM05D004435 ORTHO05D005103 0.0e+00 1861.3 2463 44.8
SGA_v2.0_scaffold5G03029 Striga asiatica HOM05D004435 ORTHO05D005103 0.0e+00 1843.2 2528 42.9
Nitab4.5_0001763g0010 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 1825.1 2558 42.9
BcaC02g12673 Brassica carinata HOM05D004435 ORTHO05D005103 0.0e+00 1818.9 2508 42.9
Hund27186 Selenicereus undatus HOM05D004435 ORTHO05D005103 0.0e+00 1815.0 2544 42.5
Thecc.01G340200 Theobroma cacao HOM05D004435 ORTHO05D005103 0.0e+00 1790.0 1956 50.5
Zm00001eb356500 Zea mays HOM05D004435 ORTHO05D005103 0.0e+00 1738.8 2513 41.1
CDE10G1324 Ceratophyllum demersum HOM05D004435 ORTHO05D005103 0.0e+00 1665.2 2560 40.0
Sc01g0002520 Simmondsia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 1584.3 1920 47.3
TPR.G20238 Trifolium pratense HOM05D004435 ORTHO05D005103 0.0e+00 1572.4 1972 45.5
unitig_736.g22808 Utricularia gibba HOM05D004435 ORTHO05D005103 0.0e+00 1466.1 2481 38.0
Glyma.16G023300 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 1419.4 1887 44.2
Aa31LG1G27940 Aethionema arabicum HOM05D004435 ORTHO05D005103 0.0e+00 1308.9 1508 47.6
Carub.0004s2928 Capsella rubella HOM05D004435 ORTHO05D005103 0.0e+00 1296.6 1546 46.6
Hma1.2p1_0101F.1_g049200 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 0.0e+00 1278.8 1349 50.0
CARHR141900 Cardamine hirsuta HOM05D004435 ORTHO05D005103 0.0e+00 1271.1 1527 46.7
TAR374G0897 Trochodendron aralioides HOM05D004435 ORTHO05D005103 0.0e+00 1262.3 1367 51.8
TAR374G0936 Trochodendron aralioides HOM05D004435 ORTHO05D005103 0.0e+00 1209.9 1113 58.7
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 0.0e+00 1163.7 1359 47.5
Lj7C498G9 Lonicera japonica HOM05D004435 ORTHO05D005103 0.0e+00 1123.6 1370 46.0
Pp3c3_34200 Physcomitrium patens HOM05D004435 ORTHO05D005103 0.0e+00 1097.4 2698 30.8
Nitab4.5_0007244g0030 Nicotiana tabacum HOM05D004435 ORTHO05D005103 1.7e-301 1040.8 1351 44.3
ATR0605G097 Amborella trichopoda HOM05D004435 ORTHO05D005103 2.0e-299 1033.9 1980 36.4
Lj7A498G38 Lonicera japonica HOM05D004435 ORTHO05D005103 2.6e-278 963.8 1069 51.0
DCAR_008666 Daucus carota HOM05D004435 ORTHO05D005103 3.1e-263 913.7 1080 48.4
DCAR_008667 Daucus carota HOM05D004435 ORTHO05D005103 3.1e-263 913.7 1080 48.4
Nitab4.5_0007244g0020 Nicotiana tabacum HOM05D004435 ORTHO05D005103 4.9e-253 879.8 1094 47.3
AagrBONN_evm.TU.Sc2ySwM_228.2861 Anthoceros agrestis HOM05D004435 ORTHO05D005103 4.0e-231 807.0 1733 33.4
DCAR_008669 Daucus carota HOM05D004435 ORTHO05D005103 8.1e-224 782.7 1180 40.2
ATR0605G027 Amborella trichopoda HOM05D004435 ORTHO05D005103 3.9e-210 737.3 570 64.2
MBI06_g46370_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 1.9e-209 734.9 518 69.1
Os01g0551900 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 4.1e-199 700.7 637 56.7
HPP92_020188 Vanilla planifolia HOM05D004435 ORTHO05D005103 3.5e-190 671.0 1187 36.4
CARHR141910 Cardamine hirsuta HOM05D004435 ORTHO05D005103 1.5e-185 655.6 992 40.1
Hma1.2p1_0101F.1_g049210 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 5.2e-178 630.6 555 58.2
SEGI_18144 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 1.0e-173 616.3 1108 38.1
Mapoly0001s0466 Marchantia polymorpha HOM05D004435 ORTHO05D005103 6.3e-168 597.0 1672 29.5
Hma1.2p1_0101F.1_g049290 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 9.8e-161 573.2 545 57.1
Hma1.2p1_0101F.1_g049270 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.4e-154 552.7 688 44.2
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 1.8e-154 552.4 794 42.9
Cpa.g.c29521 Carica papaya HOM05D004435 ORTHO05D005103 1.1e-143 516.5 487 56.9
SMO203G0146 Selaginella moellendorffii HOM05D004435 ORTHO05D005103 2.1e-139 502.3 456 51.5
SEGI_19519 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 4.6e-118 431.4 921 32.7
Aa31LG1G27950 Aethionema arabicum HOM05D004435 ORTHO05D005103 1.8e-114 419.5 648 39.5
CBR_g19326 Chara braunii HOM05D004435 ORTHO05D005103 5.3e-114 417.9 1982 25.0
Hma1.2p1_0101F.1_g049280 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 7.1e-111 407.5 512 47.3
DCAR_008668 Daucus carota HOM05D004435 ORTHO05D005103 5.3e-106 391.3 294 64.3
TPR.G20227 Trifolium pratense HOM05D004435 ORTHO05D005103 1.8e-98 366.3 458 46.3
Cpa.g.sc96.43 Carica papaya HOM05D004435 ORTHO05D005103 5.9e-89 334.7 230 69.1
ATR0242G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 2.1e-78 299.7 230 65.7
FAN01G0536 Fragaria x ananassa HOM05D004435 ORTHO05D005103 2.2e-72 279.6 194 69.6
Cpa.g.sc96.46 Carica papaya HOM05D004435 ORTHO05D005103 2.5e-71 276.2 368 45.4
PGSC0003DMG400000235 Solanum tuberosum HOM05D004435 ORTHO05D005103 1.6e-70 273.5 178 69.7
Actinidia20096 Actinidia chinensis HOM05D004435 ORTHO05D005103 3.8e-64 252.3 277 51.3
Actinidia20091 Actinidia chinensis HOM05D004435 ORTHO05D005103 4.1e-50 205.7 412 36.7
Peaxi162Scf00345g00113 Petunia axillaris HOM05D002646 ORTHO05D002782 5.9e-49 201.8 417 36.0
Psat4g016800 Pisum sativum HOM05D004435 ORTHO05D005103 9.5e-47 194.5 662 28.5
Atru.chr5.691 Acer truncatum HOM05D004435 ORTHO05D005103 3.6e-46 192.6 120 71.7
Aa31LG1G27960 Aethionema arabicum HOM05D004435 ORTHO05D005103 6.8e-45 188.3 196 49.0
BcaC02g12668 Brassica carinata HOM05D004435 ORTHO05D005103 1.3e-43 184.1 188 48.4
SEGI_02021 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 4.9e-43 182.2 121 71.9
Os01g0552000 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 1.4e-42 180.6 273 40.3
ATR0028G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 1.2e-36 161.0 498 27.7
Psat2g140840 Pisum sativum HOM05D004435 ORTHO05D005103 4.9e-35 155.6 552 25.5
Psat1g001920 Pisum sativum HOM05D004435 ORTHO05D005103 9.2e-34 151.4 235 40.9
MCO11G580 Micromonas commoda HOM05D004435 ORTHO05D005103 4.7e-30 139.0 233 37.3
Atru.chr5.692 Acer truncatum HOM05D004435 ORTHO05D005103 2.3e-29 136.7 102 67.6
Cfa023431 Carpinus fangiana HOM05D004435 ORTHO05D005103 1.5e-28 134.0 402 27.9
HanXRQChr10g0310771 Helianthus annuus HOM05D004435 ORTHO05D005103 5.8e-28 132.1 118 55.1
Ca_26677_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 1.7e-27 130.6 75 76.0
Glyma.08G280100 Glycine max HOM05D004435 ORTHO05D005103 2.4e-26 126.7 92 69.6
AagrBONN_evm.TU.Sc2ySwM_228.2860 Anthoceros agrestis HOM05D004435 ORTHO05D005103 3.0e-24 119.8 263 32.7
Psat5g173880 Pisum sativum HOM05D004435 ORTHO05D005103 5.6e-23 115.5 179 39.7
Psat5g173920 Pisum sativum HOM05D004435 ORTHO05D005103 5.6e-23 115.5 179 39.7
Cre04.g223000 Chlamydomonas reinhardtii HOM05D004435 ORTHO05D005103 4.7e-22 112.5 143 42.0
MapolyY_B0006 Marchantia polymorpha HOM05D004435 ORTHO05D005103 1.1e-21 111.3 286 30.1
Nitab4.5_0007244g0040 Nicotiana tabacum HOM05D004435 ORTHO05D005103 8.9e-21 108.2 122 47.5
Cpa.g.c42981 Carica papaya HOM05D004435 ORTHO05D005103 2.2e-19 103.6 207 30.4
HanXRQChr03g0082981 Helianthus annuus HOM05D004435 ORTHO05D005103 3.8e-19 102.8 128 43.8
FAN10G3206 Fragaria x ananassa HOM05D004435 ORTHO05D005103 1.2e-14 87.8 108 44.4
MD07G1152500 Malus domestica HOM05D004435 ORTHO05D005103 6.2e-14 85.5 50 74.0
FAN10G3182 Fragaria x ananassa HOM05D004435 ORTHO05D005103 8.1e-14 85.1 108 44.4
Atru.chr5.687 Acer truncatum HOM05D002476 ORTHO05D002652 5.2e-13 82.4 58 72.4
TPR.G40720 Trifolium pratense HOM05D004435 ORTHO05D005103 3.8e-11 76.3 104 41.3
BcaNung07057 Brassica carinata HOM05D004435 ORTHO05D005103 8.4e-11 75.1 153 35.9
Hma1.2p1_0101F.1_g049260 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.4e-10 74.3 83 48.2
arahy.Tifrunner.gnm1.ann1.63Q0V0 Arachis hypogaea HOM05D008137 ORTHO05D005103 4.3e-07 62.8 135 33.3
Psat0ss888g0080 Pisum sativum HOM05D004435 ORTHO05D005103 1.3e-06 61.2 68 44.1
Psat5g020760 Pisum sativum HOM05D004435 ORTHO05D005103 1.6e-06 60.8 76 40.8


User provided reference genes

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