Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G1899 Papaver somniferum HOM05D005836 ORTHO05D007335 4.4e-118 427.9 214 100.0
PSO339G6500 Papaver somniferum HOM05D005836 ORTHO05D007335 2.7e-115 418.7 214 97.7
Aqoxy2G00686 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 3.6e-67 258.8 220 65.9
Nitab4.5_0002985g0050 Nicotiana tabacum HOM05D005836 ORTHO05D007335 4.4e-65 251.9 218 64.2
Peaxi162Scf00372g00716 Petunia axillaris HOM05D005836 ORTHO05D007335 5.7e-65 251.5 156 80.8
Nitab4.5_0002641g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 2.8e-64 249.2 215 63.7
Peaxi162Scf00293g00715 Petunia axillaris HOM05D005836 ORTHO05D007335 1.8e-63 246.5 216 63.4
arahy.Tifrunner.gnm1.ann1.IJ2DEQ Arachis hypogaea HOM05D005836 ORTHO05D007335 5.3e-63 245.0 223 61.9
arahy.Tifrunner.gnm1.ann1.JICC5Y Arachis hypogaea HOM05D005836 ORTHO05D007335 7.0e-63 244.6 223 61.9
FvH4_3g41200 Fragaria vesca HOM05D005836 ORTHO05D007335 1.2e-62 243.8 178 69.1
FAN16G0502 Fragaria x ananassa HOM05D005836 ORTHO05D007335 1.2e-62 243.8 178 69.1
FAN21G0342 Fragaria x ananassa HOM05D005836 ORTHO05D007335 1.2e-62 243.8 178 69.1
Sopen06g002640 Solanum pennellii HOM05D005836 ORTHO05D007335 1.2e-62 243.8 213 63.4
QL01p023477 Quercus lobata HOM05D005836 ORTHO05D007335 1.6e-62 243.4 182 69.8
QL01p023545 Quercus lobata HOM05D005836 ORTHO05D007335 1.6e-62 243.4 182 69.8
arahy.Tifrunner.gnm1.ann1.R5IFJT Arachis hypogaea HOM05D005836 ORTHO05D007335 2.7e-62 242.7 223 61.4
CAN.G869.16 Capsicum annuum HOM05D005836 ORTHO05D007335 4.5e-62 241.9 214 62.6
PGSC0003DMG400020645 Solanum tuberosum HOM05D005836 ORTHO05D007335 4.5e-62 241.9 218 61.9
RcHm_v2.0_Chr5g0074011 Rosa chinensis HOM05D005836 ORTHO05D007335 7.7e-62 241.1 146 78.8
Solyc06g007760.4 Solanum lycopersicum HOM05D005836 ORTHO05D007335 3.8e-61 238.8 212 62.3
Nitab4.5_0000195g0180 Nicotiana tabacum HOM05D005836 ORTHO05D007335 6.5e-61 238.0 215 63.3
Actinidia34513 Actinidia chinensis HOM05D005836 ORTHO05D007335 8.5e-61 237.7 211 62.6
CSS0005992 Camellia sinensis var. sinensis HOM05D005836 ORTHO05D007335 8.5e-61 237.7 155 74.8
CDE07G0908 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 8.5e-61 237.7 216 61.1
Lj6g0005555 Lotus japonicus HOM05D005836 ORTHO05D007335 1.1e-60 237.3 213 59.2
TAR633G1361 Trochodendron aralioides HOM05D005836 ORTHO05D007335 1.1e-60 237.3 222 60.8
ECA248G3143 Erigeron canadensis HOM05D005836 ORTHO05D007335 1.5e-60 236.9 164 71.3
Glyma.18G049400 Glycine max HOM05D005836 ORTHO05D007335 1.9e-60 236.5 142 80.3
GSVIVG01024524001 Vitis vinifera HOM05D005836 ORTHO05D007335 3.2e-60 235.7 159 73.6
DCAR_018590 Daucus carota HOM05D005836 ORTHO05D007335 5.5e-60 235.0 192 64.6
Sed0001744 Sechium edule HOM05D005836 ORTHO05D007335 7.2e-60 234.6 220 59.5
Thecc.09G366400 Theobroma cacao HOM05D005836 ORTHO05D007335 7.2e-60 234.6 200 62.5
Cc01_g15580 Coffea canephora HOM05D005836 ORTHO05D007335 9.4e-60 234.2 154 73.4
Gohir.A03G022600 Gossypium hirsutum HOM05D005836 ORTHO05D007335 9.4e-60 234.2 213 61.5
Gohir.D03G146100 Gossypium hirsutum HOM05D005836 ORTHO05D007335 9.4e-60 234.2 213 61.5
Lsat_1_v5_gn_5_176900 Lactuca sativa HOM05D005836 ORTHO05D007335 9.4e-60 234.2 154 73.4
Manes.18G122400 Manihot esculenta HOM05D005836 ORTHO05D007335 9.4e-60 234.2 211 59.2
VMungo0540G1704 Vigna mungo HOM05D005836 ORTHO05D007335 9.4e-60 234.2 199 63.8
MD03G1046500 Malus domestica HOM05D005836 ORTHO05D007335 1.6e-59 233.4 181 66.3
SalBow2G1106 Salvia bowleyana HOM05D005836 ORTHO05D007335 1.6e-59 233.4 170 70.0
Cfa011862 Carpinus fangiana HOM05D005836 ORTHO05D007335 2.1e-59 233.0 158 75.3
Haze_24497 Corylus avellana HOM05D005836 ORTHO05D007335 3.6e-59 232.3 145 78.6
Glyma.11G201500 Glycine max HOM05D005836 ORTHO05D007335 4.7e-59 231.9 183 67.2
CANSAT54G2930 Cannabis sativa HOM05D005836 ORTHO05D007335 6.1e-59 231.5 226 57.5
Lj1C109T5 Lonicera japonica HOM05D005836 ORTHO05D007335 8.0e-59 231.1 170 71.2
MD11G1049300 Malus domestica HOM05D005836 ORTHO05D007335 8.0e-59 231.1 180 66.7
COL.COLO4_11235 Corchorus olitorius HOM05D005836 ORTHO05D007335 1.0e-58 230.7 203 63.1
Ca_15089_v3 Cicer arietinum L. HOM05D005836 ORTHO05D007335 1.4e-58 230.3 169 72.2
ClCG02G018930 Citrullus lanatus HOM05D005836 ORTHO05D007335 1.8e-58 229.9 221 60.6
Potri.013G161000 Populus trichocarpa HOM05D005836 ORTHO05D007335 2.3e-58 229.6 188 66.0
PGR119G1588 Punica granatum HOM05D005836 ORTHO05D007335 2.3e-58 229.6 156 73.1
CsaV3_6G013260 Cucumis sativus L. HOM05D005836 ORTHO05D007335 3.0e-58 229.2 220 58.6
Duzib168G0065 Durio zibethinus HOM05D005836 ORTHO05D007335 4.0e-58 228.8 143 77.6
Dinv28763 Davidia involucrata HOM05D005836 ORTHO05D007335 8.8e-58 227.6 127 85.8
Lalb_Chr17g0345731 Lupinus albus HOM05D005836 ORTHO05D007335 8.8e-58 227.6 170 69.4
Oeu023901.1 Olea europaea HOM05D005836 ORTHO05D007335 8.8e-58 227.6 155 71.0
Sabra13G0128800 Salix brachista HOM05D005836 ORTHO05D007335 8.8e-58 227.6 155 74.8
Hma1.2p1_0161F.1_g071980 Hydrangea macrophylla HOM05D005836 ORTHO05D007335 2.0e-57 226.5 213 58.2
TPR.G13816 Trifolium pratense HOM05D005836 ORTHO05D007335 2.0e-57 226.5 170 70.0
CiPaw.13G059700 Carya illinoinensis HOM05D005836 ORTHO05D007335 2.6e-57 226.1 127 83.5
HanXRQChr01g0013111 Helianthus annuus HOM05D005836 ORTHO05D007335 3.4e-57 225.7 154 71.4
Phvul.006G082200 Phaseolus vulgaris HOM05D005836 ORTHO05D007335 3.4e-57 225.7 224 58.0
MSTRG.17936 Avicennia marina HOM05D005836 ORTHO05D007335 5.7e-57 224.9 214 59.8
AUR62027208 Chenopodium quinoa HOM05D005836 ORTHO05D007335 7.5e-57 224.6 214 57.5
Eucgr.L00742 Eucalyptus grandis HOM05D005836 ORTHO05D007335 7.5e-57 224.6 153 72.5
Psat5g146440 Pisum sativum HOM05D005836 ORTHO05D007335 9.8e-57 224.2 170 68.8
Rhsim01G0245400 Rhododendron simsii HOM05D005836 ORTHO05D007335 1.3e-56 223.8 154 72.1
Thhalv10014671m.g Eutrema salsugineum HOM05D005836 ORTHO05D007335 2.2e-56 223.0 133 78.9
Carub.0008s1879 Capsella rubella HOM05D005836 ORTHO05D007335 2.8e-56 222.6 163 67.5
BraA10t43628Z Brassica rapa HOM05D005836 ORTHO05D007335 4.8e-56 221.9 159 67.3
Ciclev10002134m.g Citrus clementina HOM05D005836 ORTHO05D007335 4.8e-56 221.9 213 59.6
MELO3C019598.2 Cucumis melo HOM05D005836 ORTHO05D007335 6.3e-56 221.5 221 58.4
SGA_v2.0_scaffold77G25345 Striga asiatica HOM05D005836 ORTHO05D007335 8.3e-56 221.1 167 65.9
A10p15970 Brassica napus HOM05D000347 ORTHO05D001997 1.1e-55 220.7 149 70.5
Atru.chr10.2368 Acer truncatum HOM05D005836 ORTHO05D007335 1.4e-55 220.3 196 60.7
BcaB01g04542 Brassica carinata HOM05D005836 ORTHO05D007335 1.4e-55 220.3 154 68.8
A03p12350 Brassica napus HOM05D000347 ORTHO05D001997 1.4e-55 220.3 161 67.7
BraA03t10547Z Brassica rapa HOM05D000347 ORTHO05D001997 1.4e-55 220.3 161 67.7
Lalb_Chr10g0103941 Lupinus albus HOM05D005836 ORTHO05D007335 1.4e-55 220.3 184 64.7
Sp6g19910 Schrenkiella parvula HOM05D005836 ORTHO05D007335 1.4e-55 220.3 133 78.2
vmacro14659 Vaccinium macrocarpon HOM05D005836 ORTHO05D007335 1.8e-55 219.9 127 81.9
AUR62003260 Chenopodium quinoa HOM05D005836 ORTHO05D007335 2.4e-55 219.5 214 56.5
BcaC04g19899 Brassica carinata HOM05D005836 ORTHO05D007335 3.1e-55 219.2 149 69.8
C09p50080 Brassica napus HOM05D000347 ORTHO05D001997 3.1e-55 219.2 149 69.8
BolC9t57862H Brassica oleracea HOM05D005836 ORTHO05D007335 3.1e-55 219.2 149 69.8
Nn5g26758 Nelumbo nucifera HOM05D005836 ORTHO05D007335 3.1e-55 219.2 176 65.9
Medtr3g062920 Medicago truncatula HOM05D005836 ORTHO05D007335 5.4e-55 218.4 211 58.8
Sc03g0000150 Simmondsia chinensis HOM05D005836 ORTHO05D007335 5.4e-55 218.4 127 81.1
CARHR272060 Cardamine hirsuta HOM05D005836 ORTHO05D007335 7.0e-55 218.0 149 68.5
Os03g0331600 Oryza sativa ssp. japonica HOM05D005836 ORTHO05D007335 7.0e-55 218.0 133 76.7
TWI31G0503 Tripterygium wilfordii HOM05D005836 ORTHO05D007335 7.0e-55 218.0 202 58.4
ATR1127G006 Amborella trichopoda HOM05D005836 ORTHO05D007335 1.2e-54 217.2 169 66.3
Nitab4.5_0002399g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 1.2e-54 217.2 211 60.2
AT5G58250 Arabidopsis thaliana HOM05D005836 ORTHO05D007335 2.0e-54 216.5 164 65.9
BcaB01g04482 Brassica carinata HOM05D005836 ORTHO05D007335 2.7e-54 216.1 165 67.3
Aa31LG11G40 Aethionema arabicum HOM05D005836 ORTHO05D007335 4.5e-54 215.3 196 59.7
Migut.N00709 Erythranthe guttata HOM05D005836 ORTHO05D007335 4.5e-54 215.3 127 79.5
unitig_60.g25569 Utricularia gibba HOM05D005836 ORTHO05D007335 4.5e-54 215.3 220 55.9
C03p14500 Brassica napus HOM05D000347 ORTHO05D001997 7.7e-54 214.5 125 80.0
Hund16557 Selenicereus undatus HOM05D005836 ORTHO05D007335 1.3e-53 213.8 123 82.9
AL8G34350 Arabidopsis lyrata HOM05D005836 ORTHO05D007335 2.9e-53 212.6 163 64.4
EL10As13g24050 Beta vulgaris HOM05D005836 ORTHO05D007335 2.9e-53 212.6 122 82.8
Zm00001eb015790 Zea mays HOM05D005836 ORTHO05D007335 2.9e-53 212.6 149 68.5
unitig_0.g428 Utricularia gibba HOM05D000994 ORTHO05D007335 8.5e-53 211.1 157 66.9
THA.LOC104809827 Tarenaya hassleriana HOM05D005836 ORTHO05D007335 1.1e-52 210.7 156 67.9
BcaB01g04547 Brassica carinata HOM05D005836 ORTHO05D007335 1.9e-52 209.9 125 77.6
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 1.9e-52 209.9 125 77.6
Ah.02g126180 Amaranthus hybridus HOM05D002324 ORTHO05D002380 1.4e-50 203.8 141 73.0
SEGI_40201 Sequoiadendron giganteum HOM05D005836 ORTHO05D007335 1.4e-50 203.8 186 57.5
MBI15_g05585_MAGBIO Magnolia biondii HOM05D005836 ORTHO05D007335 8.8e-50 201.1 117 79.5
Manes.02G210261 Manihot esculenta HOM05D005836 ORTHO05D007335 3.4e-49 199.1 159 66.0
Oeu020454.1 Olea europaea HOM05D005836 ORTHO05D007335 2.2e-48 196.4 124 75.8
Pp3c13_24050 Physcomitrium patens HOM05D005836 ORTHO05D007335 5.4e-47 191.8 139 63.3
SMO358G0359 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 8.6e-45 184.5 129 65.1
AagrBONN_evm.TU.Sc2ySwM_117.3281 Anthoceros agrestis HOM05D005836 ORTHO05D007335 1.1e-44 184.1 153 59.5
SGA_v2.0_scaffold77G25340 Striga asiatica HOM05D005836 ORTHO05D007335 3.3e-44 182.6 172 57.6
Pp3c4_20840 Physcomitrium patens HOM05D005836 ORTHO05D007335 4.3e-44 182.2 180 51.1
Pp3c4_20850 Physcomitrium patens HOM05D005836 ORTHO05D007335 4.3e-44 182.2 180 51.1
Pp3c3_13470 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.6e-43 180.3 130 62.3
Mapoly0086s0004 Marchantia polymorpha HOM05D005836 ORTHO05D007335 2.8e-43 179.5 175 53.7
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 3.6e-35 152.5 170 53.5
Prupe.6G037800 Prunus persica HOM05D005836 ORTHO05D007335 2.6e-33 146.4 129 61.2
Peaxi162Scf00372g00721 Petunia axillaris HOM05D005836 ORTHO05D007335 2.0e-30 136.7 117 61.5
Manes.15G179716 Manihot esculenta HOM05D005836 ORTHO05D007335 6.2e-27 125.2 74 79.7
Manes.15G179664 Manihot esculenta HOM05D005836 ORTHO05D007335 1.4e-26 124.0 73 80.8
Cre12.g490500 Chlamydomonas reinhardtii HOM05D005836 ORTHO05D007335 2.0e-25 120.2 130 49.2
PRCOL_00000331 Prasinoderma coloniale HOM05D005836 ORTHO05D007335 1.6e-19 100.5 138 39.9
MCO04G442 Micromonas commoda HOM05D005836 ORTHO05D007335 1.1e-18 97.8 118 44.1
Cpa.g.sc2.251 Carica papaya HOM05D005836 ORTHO05D007335 7.6e-17 91.7 53 77.4
HanXRQChr11g0338221 Helianthus annuus HOM05D005836 ORTHO05D007335 2.9e-16 89.7 54 72.2
CAN.G297.11 Capsicum annuum HOM05D005836 ORTHO05D000001 8.4e-16 88.2 49 81.6
Aqoxy392s001 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 5.4e-15 85.5 102 48.0
Manes.15G176000 Manihot esculenta HOM05D005836 ORTHO05D007335 5.4e-15 85.5 74 59.5
SGA_v2.0_scaffold120G33007 Striga asiatica HOM05D002254 ORTHO05D007410 2.7e-14 83.2 50 74.0
CAN.G297.12 Capsicum annuum HOM05D005836 ORTHO05D000001 1.6e-11 73.9 50 72.0
Actinidia23823 Actinidia chinensis HOM05D005836 ORTHO05D007335 2.1e-11 73.6 65 63.1
BcaB01g04538 Brassica carinata HOM05D005836 ORTHO05D007335 7.6e-09 65.1 33 87.9
SMO173G0022 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 7.6e-09 65.1 46 60.9
HPP92_024987 Vanilla planifolia HOM05D005836 ORTHO05D007335 1.3e-08 64.3 74 50.0
Pp3c19_3370 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.2e-06 57.8 99 36.4


User provided reference genes

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