Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 2.0e-110 402.5 210 100.0
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 3.0e-103 378.6 210 95.2
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 8.9e-71 270.8 213 72.3
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 2.6e-70 269.2 213 72.3
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 3.4e-70 268.9 214 72.0
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 3.7e-69 265.4 206 72.3
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.9e-68 263.1 165 81.2
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.2e-67 260.4 220 66.8
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 2.1e-67 259.6 210 67.6
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 3.5e-67 258.8 203 70.0
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 3.5e-67 258.8 216 67.1
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 3.5e-67 258.8 187 73.8
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 4.6e-67 258.5 204 70.6
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 4.6e-67 258.5 173 76.3
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 3.9e-66 255.4 211 68.7
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 5.1e-66 255.0 212 68.9
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 8.6e-66 254.2 199 72.9
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.5e-65 253.4 200 71.0
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 2.5e-65 252.7 204 70.1
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 3.3e-65 252.3 153 85.6
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 3.3e-65 252.3 203 67.5
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 4.3e-65 251.9 214 66.8
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 4.3e-65 251.9 198 68.2
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 5.6e-65 251.5 191 68.6
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 7.3e-65 251.1 217 66.8
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 1.2e-64 250.4 211 66.8
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 1.6e-64 250.0 214 67.8
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 1.6e-64 250.0 222 67.6
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.1e-64 249.6 196 70.9
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 2.8e-64 249.2 213 65.7
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 2.8e-64 249.2 220 65.5
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 2.8e-64 249.2 196 69.9
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 2.8e-64 249.2 197 68.0
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 3.6e-64 248.8 210 64.8
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 3.6e-64 248.8 206 67.5
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 3.6e-64 248.8 213 65.3
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 4.7e-64 248.4 199 68.8
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 4.7e-64 248.4 199 68.8
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 4.7e-64 248.4 212 66.0
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 8.1e-64 247.7 218 65.1
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 1.1e-63 247.3 219 65.3
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 1.1e-63 247.3 216 64.4
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 1.4e-63 246.9 212 67.0
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.8e-63 246.5 204 68.6
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 1.8e-63 246.5 221 64.7
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 1.8e-63 246.5 199 68.3
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 2.4e-63 246.1 212 66.0
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.4e-63 246.1 210 66.7
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 3.1e-63 245.7 211 65.4
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 3.1e-63 245.7 204 66.7
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 4.0e-63 245.4 210 66.7
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 5.2e-63 245.0 208 64.4
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 5.2e-63 245.0 196 68.9
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 5.2e-63 245.0 196 68.9
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 5.2e-63 245.0 196 68.9
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 5.2e-63 245.0 196 68.9
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 5.2e-63 245.0 151 81.5
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 6.8e-63 244.6 213 65.3
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 6.8e-63 244.6 211 64.0
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 8.9e-63 244.2 209 67.9
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 1.2e-62 243.8 210 65.7
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 1.2e-62 243.8 210 66.2
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 2.6e-62 242.7 212 65.1
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 3.4e-62 242.3 213 65.7
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 3.4e-62 242.3 206 67.0
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 4.4e-62 241.9 154 81.8
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 7.6e-62 241.1 153 79.7
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 7.6e-62 241.1 206 66.5
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 9.9e-62 240.7 213 65.7
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 1.3e-61 240.4 197 68.0
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 2.2e-61 239.6 217 65.0
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 2.2e-61 239.6 206 66.5
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 2.2e-61 239.6 219 63.9
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 2.9e-61 239.2 212 65.6
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.9e-61 239.2 205 65.4
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 2.9e-61 239.2 210 66.2
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 2.9e-61 239.2 196 65.8
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 3.8e-61 238.8 155 78.1
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.9e-61 238.4 209 64.6
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 8.4e-61 237.7 198 66.7
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 1.1e-60 237.3 210 65.2
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.4e-60 236.9 209 64.1
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.9e-60 236.5 209 64.1
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 2.4e-60 236.1 185 69.7
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.4e-60 236.1 211 64.9
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 3.2e-60 235.7 219 63.5
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 5.4e-60 235.0 212 64.6
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.2e-59 233.8 211 64.0
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.6e-59 233.4 213 61.5
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 1.6e-59 233.4 211 63.5
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.6e-59 233.4 211 64.0
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.6e-59 233.4 211 63.5
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.6e-59 233.4 211 63.5
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 2.7e-59 232.6 193 68.4
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 2.7e-59 232.6 209 62.7
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 3.0e-58 229.2 218 61.0
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 1.5e-57 226.9 206 59.7
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.8e-56 222.6 204 64.7
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 6.2e-56 221.5 266 53.0
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 2.4e-55 219.5 221 59.7
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 3.1e-55 219.2 123 87.0
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 5.3e-55 218.4 200 64.0
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 6.9e-55 218.0 219 59.4
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 9.0e-55 217.6 217 59.9
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.5e-54 216.9 229 59.0
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 4.4e-54 215.3 207 60.9
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 4.4e-54 215.3 204 60.3
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 1.3e-53 213.8 158 72.2
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 1.9e-52 209.9 210 59.5
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 9.3e-52 207.6 212 55.7
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 1.0e-50 204.1 218 57.3
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 3.0e-50 202.6 203 59.1
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 6.6e-50 201.4 214 56.5
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 1.9e-49 199.9 192 61.5
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 3.6e-48 195.7 301 44.9
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 4.8e-48 195.3 214 53.3
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 2.4e-47 193.0 209 55.0
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 4.5e-46 188.7 211 54.0
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 1.3e-45 187.2 217 53.0
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 4.9e-45 185.3 102 90.2
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 6.4e-45 184.9 210 52.9
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 8.4e-45 184.5 210 52.9
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 1.1e-44 184.1 205 51.7
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 3.2e-44 182.6 151 64.9
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 7.1e-44 181.4 216 52.3
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 4.6e-43 178.7 120 72.5
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 1.5e-41 173.7 170 60.0
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 4.0e-39 165.6 197 49.2
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 3.8e-37 159.1 200 48.5
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 8.4e-37 157.9 151 55.0
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 4.2e-36 155.6 93 78.5
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 1.3e-34 150.6 120 58.3
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 1.9e-33 146.7 81 90.1
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 4.3e-33 145.6 134 56.0
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 4.3e-33 145.6 106 61.3
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 6.2e-32 141.7 222 45.5
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 3.1e-31 139.4 194 46.9
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.9e-26 122.5 67 86.6
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.9e-26 122.5 67 86.6
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 4.3e-25 119.0 80 75.0
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 3.7e-24 115.9 132 56.1
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 5.7e-17 92.0 139 47.5
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 6.9e-15 85.1 71 62.0
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 4.5e-14 82.4 50 76.0
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 2.2e-13 80.1 157 34.4
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 3.1e-07 59.7 38 76.3


User provided reference genes

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