Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 7.8e-214 748.4 816 100.0
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 5.8e-76 290.4 241 64.7
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 2.0e-68 265.4 243 58.8
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 5.8e-68 263.8 244 60.2
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 1.7e-67 262.3 246 57.7
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 2.9e-67 261.5 199 65.3
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 6.4e-67 260.4 244 60.2
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 6.4e-67 260.4 770 67.0
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 5.4e-66 257.3 199 64.3
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 2.7e-65 255.0 247 57.1
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 6.0e-65 253.8 803 71.4
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 1.0e-64 253.1 197 64.5
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 1.0e-64 253.1 343 60.6
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 3.9e-64 251.1 243 55.6
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 8.7e-64 250.0 243 57.2
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 1.9e-63 248.8 243 56.8
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 1.9e-63 248.8 201 64.2
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 2.5e-63 248.4 200 64.5
CSS0033722 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.3e-63 248.1 203 65.5
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 4.3e-63 247.7 243 56.8
Cpa.g.sc148.18 Carica papaya HOM05D006008 ORTHO05D007334 1.3e-62 246.1 211 59.7
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 4.8e-62 244.2 245 54.7
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 8.1e-62 243.4 219 58.0
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 2.4e-61 241.9 213 58.7
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 6.9e-61 240.4 197 62.9
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 6.9e-61 240.4 197 62.9
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 1.5e-60 239.2 201 60.7
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 2.0e-60 238.8 228 55.3
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 2.0e-60 238.8 207 59.9
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 2.0e-60 238.8 197 62.4
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 4.5e-60 237.7 237 54.9
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 4.5e-60 237.7 178 69.7
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 5.8e-60 237.3 197 62.4
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 7.6e-60 236.9 195 61.5
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 1.3e-59 236.1 248 52.4
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 6.4e-59 233.8 201 59.2
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 6.4e-59 233.8 200 60.0
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 8.4e-59 233.4 216 56.9
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 1.1e-58 233.0 199 58.8
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 7.1e-58 230.3 238 50.8
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 9.3e-58 229.9 195 61.5
CANSAT56G1562 Cannabis sativa HOM05D006008 ORTHO05D007334 1.2e-57 229.6 233 53.2
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 2.1e-57 228.8 202 61.4
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 2.1e-57 228.8 200 59.5
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 6.0e-57 227.3 179 66.5
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 6.0e-57 227.3 200 58.0
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 1.3e-56 226.1 194 60.8
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 1.8e-56 225.7 220 55.0
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 2.3e-56 225.3 192 63.0
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 5.1e-56 224.2 225 57.3
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 8.7e-56 223.4 169 66.3
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 8.7e-56 223.4 169 66.3
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 1.1e-55 223.0 192 58.3
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 1.5e-55 222.6 169 65.7
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 4.3e-55 221.1 158 66.5
Lalb_Chr23g0268201 Lupinus albus HOM05D006008 ORTHO05D007334 1.6e-54 219.2 199 58.8
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 2.8e-54 218.4 160 67.5
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 2.8e-54 218.4 195 56.9
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.1e-53 216.5 181 65.2
CANSAT80G2648 Cannabis sativa HOM05D006008 ORTHO05D007334 1.1e-53 216.5 236 51.3
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.4e-53 216.1 149 70.5
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.4e-53 216.1 149 70.5
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 1.8e-53 215.7 244 49.2
CANSAT21G0760 Cannabis sativa HOM05D006008 ORTHO05D007334 4.0e-53 214.5 221 51.1
CANSAT21G2303 Cannabis sativa HOM05D006008 ORTHO05D007334 4.0e-53 214.5 191 57.6
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 6.9e-53 213.8 219 52.5
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 2.0e-52 212.2 190 57.4
CANSAT54G0183 Cannabis sativa HOM05D006008 ORTHO05D007334 2.2e-51 208.8 234 49.6
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 8.4e-51 206.8 193 56.5
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 1.4e-50 206.1 208 53.4
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 4.2e-50 204.5 160 61.2
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 7.1e-50 203.8 199 54.8
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 2.7e-49 201.8 189 56.1
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 2.7e-49 201.8 204 55.4
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 4.6e-49 201.1 767 62.2
CSS0018849 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.0e-48 199.9 198 58.6
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.3e-48 199.5 203 57.1
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.3e-48 198.7 203 57.1
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 2.3e-48 198.7 205 51.7
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 3.9e-48 198.0 201 53.7
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 8.7e-48 196.8 196 52.6
Nn7g36097 Nelumbo nucifera HOM05D006008 ORTHO05D007334 1.9e-47 195.7 187 56.1
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 1.3e-46 193.0 206 50.0
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.7e-46 191.4 186 57.0
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 2.0e-44 185.7 195 52.3
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 2.9e-43 181.8 120 75.0
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 8.5e-43 180.3 164 58.5
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 2.5e-42 178.7 174 53.4
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 9.3e-42 176.8 180 51.7
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 1.2e-41 176.4 176 49.4
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 2.7e-41 175.3 177 53.1
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 2.7e-41 175.3 177 53.1
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 7.9e-41 173.7 120 70.8
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 1.5e-39 169.5 174 51.7
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 2.5e-39 168.7 181 50.3
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 4.3e-39 167.9 173 53.2
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 4.3e-39 167.9 165 51.5
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 5.7e-39 167.5 120 70.0
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 7.4e-39 167.2 159 55.3
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 6.9e-37 160.6 155 55.5
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 6.9e-37 160.6 135 59.3
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 5.9e-36 157.5 159 54.1
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 1.7e-35 156.0 107 71.0
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 2.2e-35 155.6 165 49.1
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 2.9e-35 155.2 131 57.3
CSS0039067 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.4e-34 152.9 181 53.0
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 2.5e-34 152.1 107 67.3
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 7.2e-34 150.6 130 55.4
ATR0180G020 Amborella trichopoda HOM05D006008 ORTHO05D007334 1.6e-33 149.4 131 55.7
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 2.7e-33 148.7 128 57.0
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 2.7e-33 148.7 154 49.4
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 4.7e-33 147.9 129 55.8
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 7.9e-33 147.1 150 49.3
CsaV3_4G036480 Cucumis sativus L. HOM05D006008 ORTHO05D007334 1.0e-32 146.7 151 49.0
FAN20G1003 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.0e-32 146.7 154 48.1
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.4e-32 146.4 130 60.0
Nn7g36096 Nelumbo nucifera HOM05D006008 ORTHO05D007334 8.8e-32 143.7 152 46.1
Lalb_Chr23g0268191 Lupinus albus HOM05D006008 ORTHO05D007334 3.7e-30 138.3 152 48.0
Glyma.04G060500 Glycine max HOM05D006008 ORTHO05D007334 1.4e-29 136.3 154 48.1
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 2.4e-29 135.6 146 50.0
CANSAT21G2219 Cannabis sativa HOM05D006008 ORTHO05D007334 7.7e-28 130.6 330 52.1
SEGI_41266 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 1.4e-26 126.3 157 45.9
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 4.7e-25 121.3 127 50.4
BcaNung03118 Brassica carinata HOM05D006008 ORTHO05D007334 1.8e-24 119.4 151 45.7
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 5.2e-24 117.9 128 53.1
SEGI_02316 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 4.8e-22 111.3 124 44.4
HPP92_017173 Vanilla planifolia HOM05D006008 ORTHO05D007334 1.8e-21 109.4 142 38.7
CSS0031354 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.4e-15 88.2 112 41.1
BcaNung03117 Brassica carinata HOM05D006008 ORTHO05D007334 8.2e-14 84.0 107 45.8
PGR083G0367 Punica granatum HOM05D002453 ORTHO05D002107 8.8e-08 63.9 143 26.6
QL04p089735 Quercus lobata HOM05D022192 ORTHO05D009908 4.4e-07 61.6 38 78.9
ATR0180G010 Amborella trichopoda HOM05D047953 ORTHO05D038274 1.3e-06 60.1 60 50.0
Nitab4.5_0005983g0010 Nicotiana tabacum HOM05D002453 ORTHO05D002107 2.8e-06 58.9 143 21.7
Nitab4.5_0000026g0050 Nicotiana tabacum HOM05D002453 ORTHO05D002107 3.7e-06 58.5 143 22.4
Sopen06g008520 Solanum pennellii HOM05D002453 ORTHO05D002107 6.3e-06 57.8 145 24.1


User provided reference genes

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