Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 9.7e-253 876.3 440 100.0
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 1.1e-240 836.3 454 94.1
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 4.3e-184 648.3 432 72.5
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 8.1e-183 644.0 432 73.1
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 4.8e-175 618.2 432 69.7
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 1.4e-174 616.7 428 69.6
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 4.9e-172 608.2 431 66.4
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 4.9e-172 608.2 432 67.4
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 8.4e-172 607.4 440 67.7
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 1.2e-170 603.6 431 67.7
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 2.1e-170 602.8 442 67.4
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 4.6e-170 601.7 442 66.5
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 4.6e-170 601.7 441 66.2
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 6.0e-170 601.3 431 67.7
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 1.0e-169 600.5 431 66.8
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 1.8e-169 599.7 432 67.1
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 1.8e-169 599.7 440 65.7
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 6.7e-169 597.8 432 66.7
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 6.7e-169 597.8 431 67.5
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 2.5e-168 595.9 430 67.2
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 4.3e-168 595.1 442 66.3
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 1.3e-167 593.6 430 67.2
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 2.1e-167 592.8 434 65.2
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 3.7e-167 592.0 438 65.8
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.4e-166 590.1 434 65.4
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 1.8e-166 589.7 432 64.6
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 2.4e-166 589.3 444 64.4
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 2.4e-166 589.3 442 66.1
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 3.1e-166 589.0 434 64.1
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 4.0e-166 588.6 439 64.5
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 1.2e-165 587.0 434 64.7
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 1.2e-165 587.0 429 66.4
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 2.0e-165 586.3 430 66.3
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 3.4e-165 585.5 439 64.5
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 1.0e-164 583.9 432 64.1
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 1.0e-164 583.9 430 66.0
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 1.3e-164 583.6 442 64.7
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 1.3e-164 583.6 434 63.8
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 1.7e-164 583.2 429 65.7
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 1.7e-164 583.2 432 65.7
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 1.7e-164 583.2 433 65.4
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 2.9e-164 582.4 434 63.8
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 2.9e-164 582.4 432 65.7
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 1.1e-163 580.5 439 63.6
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 1.1e-163 580.5 428 65.9
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 1.4e-163 580.1 438 63.2
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 1.4e-163 580.1 432 65.3
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 5.5e-163 578.2 431 64.5
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 5.5e-163 578.2 438 63.7
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 1.2e-162 577.0 433 65.6
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 2.1e-162 576.2 441 64.6
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 4.6e-162 575.1 431 65.2
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 7.9e-162 574.3 439 64.2
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 6.7e-161 571.2 469 61.6
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 1.1e-160 570.5 432 64.6
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 2.5e-160 569.3 456 63.6
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 2.2e-159 566.2 426 64.1
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 4.8e-159 565.1 434 63.8
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 1.1e-158 563.9 430 64.0
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 1.4e-158 563.5 436 64.4
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 2.4e-158 562.8 435 63.9
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 9.0e-158 560.8 430 63.7
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 5.9e-157 558.1 434 64.3
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 2.9e-156 555.8 433 64.9
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 5.0e-156 555.1 430 63.7
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 9.4e-155 550.8 430 62.6
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 1.2e-154 550.4 415 64.8
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 1.6e-154 550.1 429 63.6
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 2.7e-154 549.3 435 61.4
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 3.6e-154 548.9 430 63.5
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.8e-153 546.6 439 61.5
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 1.1e-152 543.9 429 61.3
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 9.7e-152 540.8 415 64.1
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 2.2e-151 539.7 433 61.4
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 3.7e-151 538.9 474 58.0
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 4.8e-151 538.5 443 60.7
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 1.1e-150 537.3 433 61.0
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 9.1e-150 534.3 472 57.6
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 1.5e-149 533.5 436 60.6
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 1.3e-148 530.4 434 61.8
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 3.8e-148 528.9 473 57.7
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 8.5e-148 527.7 522 53.1
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 1.9e-147 526.6 511 54.2
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 9.4e-147 524.2 430 61.2
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 1.6e-146 523.5 420 61.9
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 1.8e-145 520.0 430 61.2
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 2.8e-143 512.7 375 67.7
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 2.5e-139 499.6 376 63.6
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 4.2e-139 498.8 362 68.0
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 5.2e-137 491.9 377 62.3
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 7.4e-136 488.0 433 56.8
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 1.7e-135 486.9 458 55.7
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.0e-133 479.9 441 56.0
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.3e-132 477.2 378 61.9
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 1.1e-131 474.2 378 61.6
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 5.5e-131 471.9 444 55.4
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 3.0e-129 466.1 420 57.6
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 1.5e-128 463.8 728 39.0
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 2.6e-128 463.0 362 63.3
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 7.5e-128 461.5 433 55.2
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 5.5e-123 445.3 431 52.0
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 4.0e-121 439.1 693 39.4
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 9.1e-118 427.9 438 50.2
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 8.0e-114 414.8 300 66.0
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 8.6e-108 394.8 287 66.9
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.1e-107 394.4 319 60.5
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 1.4e-105 387.5 341 58.1
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 5.2e-105 385.6 339 58.4
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 3.7e-95 352.8 435 43.7
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 1.2e-93 347.8 349 50.1
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 1.5e-83 314.3 247 62.8
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 2.4e-81 307.0 219 68.0
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 2.4e-81 307.0 219 68.9
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 7.9e-69 265.4 236 61.9
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 2.0e-64 250.8 429 35.4
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 3.5e-61 240.0 283 49.1
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 1.6e-58 231.1 161 68.9
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 9.0e-57 225.3 215 56.7
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 5.1e-52 209.5 134 75.4
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 1.3e-50 204.9 428 34.3
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 6.2e-50 202.6 159 61.0
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 7.6e-48 195.7 142 66.2
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 7.2e-46 189.1 140 63.6
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 2.1e-45 187.6 130 70.8
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 4.3e-43 179.9 149 57.7
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 2.9e-39 167.2 319 33.9
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 5.0e-31 139.8 200 42.5
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 1.9e-30 137.9 193 43.0
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 5.1e-28 129.8 124 50.8
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 4.7e-21 106.7 95 48.4
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 6.1e-21 106.3 87 55.2
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 1.3e-18 98.6 146 40.4
Carub.0005s0002 Capsella rubella HOM05D005218 ORTHO05D006657 9.1e-17 92.4 52 76.9
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 4.7e-13 80.1 85 38.8
Lsat_1_v5_gn_2_39840 Lactuca sativa HOM05D000613 ORTHO05D000446 1.4e-12 78.6 79 48.1
Lsat_1_v5_gn_4_157281 Lactuca sativa HOM05D005218 ORTHO05D000446 2.3e-12 77.8 79 49.4
Lsat_1_v5_gn_8_9201 Lactuca sativa HOM05D005218 ORTHO05D000446 3.0e-12 77.4 84 47.6
Duzib151G1109 Durio zibethinus HOM05D005218 ORTHO05D000596 9.1e-09 65.9 41 70.7
BcaB01g06129 Brassica carinata HOM05D005218 ORTHO05D006657 2.7e-08 64.3 50 62.0
Lsat_1_v5_gn_5_172481 Lactuca sativa HOM05D001702 ORTHO05D001791 2.7e-08 64.3 43 60.5
CDE07G1760 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.1e-06 58.9 42 61.9
RcHm_v2.0_Chr2g0163341 Rosa chinensis HOM05D005218 ORTHO05D006657 2.5e-06 57.8 39 66.7
MBI07_g27400_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 3.2e-06 57.4 44 63.6


User provided reference genes

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