Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 1.1e-164 583.2 296 100.0
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 5.7e-164 580.9 296 99.7
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 9.7e-156 553.5 296 94.6
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 8.2e-155 550.4 296 93.9
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 1.1e-154 550.1 296 94.9
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 4.7e-126 454.9 300 77.3
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 4.7e-126 454.9 300 76.3
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 1.0e-125 453.8 300 76.3
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 1.4e-125 453.4 301 77.4
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 8.9e-125 450.7 300 75.7
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 5.7e-124 448.0 300 75.3
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 9.8e-124 447.2 298 75.8
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 1.7e-123 446.4 300 75.3
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 1.1e-122 443.7 300 75.0
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 5.4e-122 441.4 294 76.5
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 7.0e-122 441.0 302 74.8
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 9.2e-122 440.7 300 74.3
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 1.2e-121 440.3 295 75.3
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 2.7e-121 439.1 297 74.4
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 3.5e-121 438.7 295 76.3
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 1.0e-120 437.2 300 74.0
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 1.7e-120 436.4 294 75.2
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 2.3e-120 436.0 300 75.7
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 3.3e-119 432.2 294 74.8
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 7.3e-119 431.0 300 74.7
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 7.3e-119 431.0 293 75.4
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 1.2e-118 430.3 310 71.6
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 8.0e-118 427.6 301 72.8
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.0e-117 427.2 295 75.9
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 4.0e-117 425.2 301 72.4
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 5.2e-117 424.9 298 75.5
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 6.8e-117 424.5 295 75.9
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 8.9e-117 424.1 301 72.1
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 2.0e-116 422.9 300 71.7
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 2.6e-116 422.5 301 72.8
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 2.6e-116 422.5 298 74.8
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 2.6e-116 422.5 292 75.3
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 3.4e-116 422.2 300 74.7
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 3.4e-116 422.2 291 73.5
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 4.4e-116 421.8 298 74.5
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 9.8e-116 420.6 288 74.7
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 4.9e-115 418.3 290 73.1
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 4.9e-115 418.3 290 73.1
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 4.9e-115 418.3 301 72.1
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 4.9e-115 418.3 298 73.5
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 8.3e-115 417.5 300 72.3
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 1.4e-114 416.8 290 74.1
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.4e-114 416.8 290 72.8
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 1.4e-114 416.8 300 72.3
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 2.4e-114 416.0 295 73.2
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 7.0e-114 414.5 302 72.5
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 7.8e-113 411.0 304 70.1
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 7.8e-113 411.0 300 72.0
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 2.3e-112 409.5 300 70.3
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 8.6e-112 407.5 272 75.0
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.9e-111 406.4 293 71.7
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 3.3e-111 405.6 290 72.8
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 4.7e-110 401.7 291 71.8
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 1.4e-109 400.2 297 71.0
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.8e-109 399.8 291 72.2
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 6.8e-109 397.9 301 69.1
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 6.8e-109 397.9 296 69.6
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 1.2e-108 397.1 301 69.1
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 1.2e-108 397.1 302 70.2
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 1.5e-108 396.7 299 69.6
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 2.0e-108 396.4 301 68.8
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 2.0e-108 396.4 291 70.4
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 4.4e-108 395.2 293 70.0
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 7.5e-108 394.4 291 71.1
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 1.7e-107 393.3 294 69.4
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 8.3e-107 391.0 293 68.9
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 8.3e-107 391.0 286 72.0
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 1.9e-106 389.8 290 69.0
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 4.1e-106 388.7 346 63.0
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 5.4e-106 388.3 297 68.7
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 7.1e-106 387.9 265 74.3
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 1.6e-105 386.7 299 67.9
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 2.1e-105 386.3 283 72.1
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 3.5e-105 385.6 295 68.5
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 6.0e-105 384.8 320 64.7
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 6.0e-105 384.8 268 73.5
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 1.0e-104 384.0 297 68.4
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 1.3e-104 383.6 268 73.5
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 3.9e-104 382.1 294 68.4
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 3.9e-104 382.1 269 72.5
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 5.1e-104 381.7 291 66.7
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 6.6e-104 381.3 265 73.6
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 2.5e-103 379.4 299 66.2
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 4.3e-103 378.6 316 64.9
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 5.6e-103 378.3 290 69.7
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 7.3e-103 377.9 283 70.3
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 1.6e-102 376.7 292 67.1
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 6.2e-102 374.8 269 71.4
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.1e-101 374.0 269 71.0
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 1.1e-101 374.0 282 68.8
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 1.1e-101 374.0 295 67.8
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 1.4e-101 373.6 296 65.9
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.8e-101 373.2 253 74.7
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 6.8e-101 371.3 295 67.5
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 4.4e-100 368.6 293 67.6
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 4.9e-99 365.2 268 70.5
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 1.1e-98 364.0 305 64.6
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 1.7e-96 356.7 267 68.2
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 1.7e-96 356.7 252 73.0
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 8.6e-96 354.4 215 80.9
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 3.3e-95 352.4 247 74.1
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 4.3e-95 352.1 247 74.1
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 4.3e-95 352.1 255 74.5
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 7.3e-95 351.3 247 74.1
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 4.7e-94 348.6 245 74.7
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 6.2e-94 348.2 280 67.5
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 1.2e-92 344.0 311 60.8
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 5.8e-92 341.7 287 62.7
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 2.9e-91 339.3 234 76.1
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 6.4e-91 338.2 248 72.2
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 1.9e-90 336.7 243 72.0
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 3.2e-90 335.9 254 68.9
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 3.2e-90 335.9 279 67.0
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 4.3e-87 325.5 292 61.0
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 2.6e-84 316.2 291 59.8
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.6e-81 307.0 212 75.5
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 2.7e-81 306.2 296 60.1
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 6.0e-81 305.1 179 85.5
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 1.0e-80 304.3 224 71.9
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 3.4e-76 289.3 305 52.1
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 6.4e-75 285.0 179 79.3
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 1.1e-74 284.3 246 63.0
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 7.1e-74 281.6 215 69.8
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 1.2e-73 280.8 234 65.8
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 7.9e-73 278.1 255 59.2
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 7.9e-73 278.1 309 51.8
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 3.0e-72 276.2 311 49.2
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 1.9e-71 273.5 301 50.2
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 3.7e-70 269.2 257 59.5
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 2.9e-67 259.6 179 70.9
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 2.5e-66 256.5 284 51.8
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 3.5e-65 252.7 177 70.1
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 6.0e-65 251.9 255 56.1
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 6.7e-64 248.4 219 58.9
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 3.7e-62 242.7 163 75.5
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 3.8e-59 232.6 139 82.7
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 9.7e-55 218.0 204 59.3
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 8.2e-54 214.9 256 54.7
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 8.8e-48 194.9 173 62.4
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 3.7e-46 189.5 219 45.2
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 1.7e-43 180.6 141 66.0
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.4e-42 177.6 155 62.6
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 1.6e-36 157.5 120 70.8
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.0e-32 144.8 109 67.9
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 3.7e-30 136.3 82 81.7
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 4.2e-26 122.9 79 74.7
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 2.3e-24 117.1 64 87.5
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 1.4e-16 91.3 66 71.2
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.5e-15 87.8 108 50.0
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.6e-15 87.0 89 51.7
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 2.8e-14 83.6 90 52.2
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.3e-11 74.7 52 69.2
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 8.9e-08 62.0 48 64.6


User provided reference genes

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