Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 4.9e-252 874.0 449 100.0
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 3.4e-229 798.1 421 97.1
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 1.1e-155 553.9 427 69.1
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 5.3e-145 518.5 426 64.6
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 6.9e-145 518.1 426 65.3
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 1.2e-144 517.3 426 65.5
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 1.7e-143 513.5 405 67.2
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 4.9e-143 511.9 426 65.3
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 1.4e-142 510.4 419 63.2
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 1.2e-141 507.3 405 67.4
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 3.5e-141 505.8 403 67.7
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 1.7e-140 503.4 426 63.8
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 1.5e-139 500.4 415 64.8
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 1.5e-139 500.4 402 67.7
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 1.5e-139 500.4 367 70.6
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 4.3e-139 498.8 402 67.2
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 7.3e-139 498.0 402 66.7
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 7.3e-139 498.0 405 66.4
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 1.3e-138 497.3 404 66.1
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 4.8e-138 495.4 403 65.8
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 5.3e-137 491.9 412 62.6
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 3.4e-136 489.2 405 64.4
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 5.8e-136 488.4 405 63.7
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 7.6e-136 488.0 405 64.2
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 1.7e-135 486.9 445 59.1
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 3.8e-135 485.7 422 62.3
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 1.1e-134 484.2 385 67.3
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 5.4e-134 481.9 405 62.7
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 9.3e-134 481.1 410 63.7
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 1.8e-132 476.9 428 61.7
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 3.0e-132 476.1 428 61.0
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 6.7e-132 474.9 403 64.0
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 8.7e-132 474.6 417 62.4
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 1.1e-131 474.2 400 62.5
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 1.1e-131 474.2 461 56.8
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 4.3e-131 472.2 403 62.0
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 1.6e-130 470.3 424 59.2
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 2.8e-130 469.5 424 59.9
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 4.8e-130 468.8 419 61.3
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 4.0e-129 465.7 477 55.3
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 5.3e-129 465.3 400 61.5
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 9.0e-129 464.5 401 61.6
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 1.2e-128 464.2 405 61.2
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 1.5e-128 463.8 415 60.7
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 5.8e-128 461.8 414 61.1
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 7.6e-128 461.5 400 61.8
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 6.4e-127 458.4 400 61.2
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 1.4e-126 457.2 424 57.8
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 2.5e-126 456.4 425 58.1
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 2.5e-126 456.4 427 59.5
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 3.2e-126 456.1 421 60.1
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 7.1e-126 454.9 400 58.8
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 9.3e-126 454.5 425 59.1
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 3.5e-125 452.6 403 59.8
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 7.9e-125 451.4 414 61.4
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 3.0e-124 449.5 405 59.3
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 6.7e-124 448.4 366 65.6
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 6.7e-124 448.4 429 59.2
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 1.1e-123 447.6 421 59.1
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 3.3e-123 446.0 402 58.7
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 3.3e-123 446.0 424 60.1
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 4.3e-123 445.7 405 60.5
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 2.8e-122 443.0 420 58.8
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 2.4e-121 439.9 345 66.1
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 3.1e-121 439.5 413 59.6
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 3.1e-121 439.5 413 59.6
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 3.1e-121 439.5 425 58.1
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 5.3e-121 438.7 344 67.7
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 6.9e-121 438.3 413 59.3
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 1.5e-120 437.2 413 59.1
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 2.6e-120 436.4 443 56.9
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 1.7e-119 433.7 429 58.3
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 1.7e-119 433.7 429 56.6
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 6.5e-119 431.8 429 58.0
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 1.1e-118 431.0 406 58.4
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 1.4e-118 430.6 429 57.8
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 3.2e-118 429.5 422 57.3
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 7.1e-118 428.3 413 59.3
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 9.3e-118 427.9 431 54.8
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 2.7e-117 426.4 433 57.3
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 4.6e-117 425.6 417 55.2
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 5.1e-116 422.2 391 57.0
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 6.7e-116 421.8 429 55.7
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 8.7e-116 421.4 440 53.0
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 1.9e-115 420.2 395 58.2
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 2.2e-114 416.8 458 55.0
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.4e-113 414.1 409 56.7
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 2.4e-113 413.3 440 55.9
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 5.9e-112 408.7 330 66.7
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 1.3e-111 407.5 406 56.9
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 3.8e-111 406.0 367 61.0
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 5.5e-110 402.1 365 58.9
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 2.1e-109 400.2 444 53.4
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 3.6e-109 399.4 422 54.3
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 2.5e-107 393.3 309 68.9
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 1.7e-106 390.6 336 62.5
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 3.7e-106 389.4 331 62.5
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 2.1e-101 373.6 340 58.8
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 1.0e-100 371.3 347 59.1
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 1.8e-97 360.5 302 62.9
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 3.1e-97 359.8 376 57.7
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 2.0e-96 357.1 454 48.7
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.9e-95 353.2 281 67.3
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 3.8e-95 352.8 287 66.6
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 2.1e-93 347.1 332 56.3
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 3.6e-93 346.3 336 57.7
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 9.1e-89 331.6 292 61.0
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 8.5e-87 325.1 343 53.1
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 9.8e-75 285.0 371 49.6
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 1.2e-67 261.5 240 60.4
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 2.9e-63 246.9 423 36.9
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 5.2e-60 236.1 429 37.5
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 1.3e-58 231.5 212 57.5
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 7.0e-57 225.7 149 78.5
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 2.3e-55 220.7 128 84.4
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 2.3e-52 210.7 416 33.7
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 2.7e-48 197.2 324 40.4
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 7.3e-46 189.1 124 74.2
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 4.4e-27 126.7 100 67.0
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 2.4e-25 120.9 93 68.8
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 9.3e-25 119.0 101 65.3
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 1.0e-23 115.5 149 47.0
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 9.6e-22 109.0 56 92.9
SEGI_21584 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 2.0e-19 101.3 115 41.7
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 1.7e-18 98.2 104 48.1
TPR.G35563 Trifolium pratense HOM05D005892 ORTHO05D007364 3.2e-17 94.0 103 48.5
CBR_g10855 Chara braunii HOM05D005892 ORTHO05D007364 2.0e-11 74.7 144 33.3
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 2.2e-10 71.2 111 40.5


User provided reference genes

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