Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 7.8e-237 823.5 458 100.0
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 8.1e-234 813.5 458 99.1
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 1.3e-183 646.7 463 80.3
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 5.0e-183 644.8 461 80.0
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 3.2e-182 642.1 459 79.5
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 4.2e-182 641.7 459 79.3
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 1.3e-178 630.2 460 79.1
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 1.6e-178 629.8 459 79.7
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 1.7e-175 619.8 460 77.4
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 2.2e-175 619.4 460 77.2
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 3.2e-174 615.5 460 77.2
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 7.2e-174 614.4 460 77.6
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 9.4e-174 614.0 460 76.7
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 1.6e-173 613.2 460 74.3
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 3.6e-173 612.1 460 77.4
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 1.0e-172 610.5 460 75.7
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 1.8e-172 609.8 460 76.7
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 2.0e-171 606.3 460 77.2
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 3.3e-171 605.5 461 74.6
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 4.4e-171 605.1 461 74.4
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 5.7e-171 604.7 460 78.0
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 9.7e-171 604.0 460 75.4
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 2.2e-170 602.8 460 76.1
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 2.2e-170 602.8 460 77.6
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 2.2e-170 602.8 460 74.3
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 6.3e-170 601.3 460 76.7
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 3.1e-169 599.0 459 75.4
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 4.1e-169 598.6 462 75.3
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 4.5e-168 595.1 459 75.8
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 4.5e-168 595.1 458 74.5
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 7.7e-168 594.3 460 73.5
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 2.2e-167 592.8 461 75.3
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 1.1e-166 590.5 462 68.0
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 1.1e-166 590.5 461 75.5
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 1.4e-166 590.1 461 75.3
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 5.5e-166 588.2 459 74.5
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 9.4e-166 587.4 459 74.5
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 2.1e-165 586.3 458 73.4
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 3.6e-165 585.5 460 74.6
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 7.9e-165 584.3 457 73.7
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 1.0e-164 583.9 459 74.3
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 1.4e-164 583.6 459 74.1
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 2.3e-164 582.8 460 73.9
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 5.2e-164 581.6 460 74.1
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 6.7e-164 581.3 459 73.6
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 8.8e-164 580.9 461 74.8
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 4.4e-163 578.6 464 73.9
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 5.7e-163 578.2 461 74.8
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 9.7e-163 577.4 460 74.6
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 9.7e-163 577.4 455 74.7
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 2.8e-162 575.9 456 73.0
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 2.8e-162 575.9 461 73.8
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 3.7e-162 575.5 460 73.3
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 3.7e-162 575.5 460 73.5
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 1.4e-161 573.5 504 63.9
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 1.8e-161 573.2 459 73.2
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 3.1e-161 572.4 439 77.0
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 7.0e-161 571.2 455 74.3
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 1.2e-160 570.5 466 74.2
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 1.2e-160 570.5 460 66.5
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 1.6e-160 570.1 461 66.8
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 1.6e-160 570.1 461 66.8
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 1.6e-160 570.1 460 71.7
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 1.6e-160 570.1 489 70.1
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 2.0e-160 569.7 466 73.8
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 5.9e-160 568.2 459 71.5
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 5.9e-160 568.2 460 73.5
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 1.3e-159 567.0 460 70.9
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 1.3e-159 567.0 459 70.4
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 5.0e-159 565.1 460 72.4
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 1.5e-158 563.5 473 71.2
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 1.6e-157 560.1 460 72.0
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 2.1e-157 559.7 460 72.0
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 2.7e-157 559.3 460 71.3
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 3.6e-157 558.9 460 71.3
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 4.7e-157 558.5 460 71.1
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 1.8e-156 556.6 462 71.0
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 1.5e-155 553.5 481 67.6
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 2.2e-154 549.7 459 71.0
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 4.8e-154 548.5 459 70.2
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 6.3e-154 548.1 462 70.1
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 1.2e-152 543.9 457 70.7
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 4.5e-152 542.0 467 69.4
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 4.5e-152 542.0 460 62.6
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 4.5e-152 542.0 461 69.2
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 2.9e-151 539.3 457 70.2
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 3.8e-151 538.9 457 70.2
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 5.0e-151 538.5 457 70.2
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 1.0e-148 530.8 464 63.4
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 3.4e-147 525.8 389 69.7
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 4.4e-147 525.4 387 69.3
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.3e-146 523.9 460 69.3
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 1.3e-146 523.9 460 69.1
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 3.7e-146 522.3 460 67.8
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 4.8e-146 521.9 460 68.5
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.1e-145 520.8 460 67.6
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 1.2e-144 517.3 387 68.5
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.7e-143 513.5 460 67.4
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 5.0e-143 511.9 549 60.7
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 5.5e-142 508.4 459 65.6
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 2.8e-141 506.1 389 68.1
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 3.6e-141 505.8 462 66.7
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 3.4e-139 499.2 457 67.0
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 2.2e-138 496.5 460 65.9
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 4.9e-138 495.4 389 67.1
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 1.6e-136 490.3 460 65.2
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 5.6e-134 481.9 380 76.1
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 4.7e-133 478.8 496 61.5
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 8.3e-130 468.0 456 61.4
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 1.4e-129 467.2 382 73.0
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 4.1e-129 465.7 459 56.6
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 1.2e-125 454.1 456 63.8
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 5.8e-115 418.7 465 54.0
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 3.7e-114 416.0 456 57.0
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 1.0e-111 407.9 366 62.3
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 5.8e-107 392.1 298 70.8
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 6.6e-103 378.6 457 51.9
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 5.3e-84 315.8 317 58.0
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 2.6e-75 287.0 292 65.4
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 5.3e-68 262.7 456 43.9
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 3.2e-65 253.4 393 39.9
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.3e-58 231.5 242 54.1
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 1.7e-53 214.5 510 39.2
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 1.8e-52 211.1 188 63.3
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 5.7e-46 189.5 391 31.7
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 3.7e-45 186.8 161 63.4
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 8.2e-45 185.7 122 77.0
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 9.4e-41 172.2 123 69.9
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 7.5e-38 162.5 508 34.3
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 2.7e-35 154.1 121 66.9
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 2.7e-32 144.1 211 45.0
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 7.5e-30 136.0 135 57.0
BcaC04g24210 Brassica carinata HOM05D005230 ORTHO05D006506 2.7e-19 100.9 66 78.8
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 5.9e-19 99.8 98 86.7
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 6.6e-18 96.3 220 34.5
Nn7g36957 Nelumbo nucifera HOM05D005230 ORTHO05D006506 5.6e-17 93.2 55 85.5
VMungo1309G2461 Vigna mungo HOM05D002467 ORTHO05D013374 1.2e-16 92.0 84 58.3
Psat2g003760 Pisum sativum HOM05D005230 ORTHO05D006506 3.6e-16 90.5 90 58.9
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 4.9e-13 80.1 59 69.5
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 3.0e-10 70.9 58 60.3
TAR623G0477 Trochodendron aralioides HOM05D005230 ORTHO05D006506 2.5e-09 67.8 97 44.3
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 9.5e-09 65.9 65 52.3
Dinv24611 Davidia involucrata HOM05D005230 ORTHO05D006506 2.8e-08 64.3 49 73.5
Psat4g142680 Pisum sativum HOM05D000493 ORTHO05D001638 2.8e-08 64.3 59 55.9
Psat0s472g0120 Pisum sativum HOM05D005230 ORTHO05D023087 6.2e-08 63.2 60 56.7
Psat2g028360 Pisum sativum HOM05D005230 ORTHO05D006506 1.1e-07 62.4 106 40.6
Peaxi162Scf00225g00424 Petunia axillaris HOM05D004145 ORTHO05D004879 4.0e-07 60.5 407 20.4
THA.LOC104805832 Tarenaya hassleriana HOM05D004145 ORTHO05D004879 5.2e-07 60.1 416 21.6
MELO3C033360.2 Cucumis melo HOM05D005230 ORTHO05D013374 6.8e-07 59.7 112 42.0
PSO541G4045 Papaver somniferum HOM05D004145 ORTHO05D004879 1.5e-06 58.5 399 22.3
PGR004G0092 Punica granatum HOM05D004145 ORTHO05D004879 1.5e-06 58.5 410 21.0
CDE03G0316 Ceratophyllum demersum HOM05D002357 ORTHO05D002676 2.6e-06 57.8 149 25.5
AL7G36090 Arabidopsis lyrata HOM05D004145 ORTHO05D004879 3.4e-06 57.4 245 24.5
PRCOL_00001177 Prasinoderma coloniale HOM05D004145 ORTHO05D004879 4.4e-06 57.0 235 24.7
Nitab4.5_0010351g0020 Nicotiana tabacum HOM05D004145 ORTHO05D004879 5.8e-06 56.6 407 20.4
SMO347G0343 Selaginella moellendorffii HOM05D002357 ORTHO05D002676 5.8e-06 56.6 149 26.2
HanXRQChr09g0247091 Helianthus annuus HOM05D002357 ORTHO05D002676 7.5e-06 56.2 163 25.2
SMO356G0330 Selaginella moellendorffii HOM05D004145 ORTHO05D004879 9.8e-06 55.8 251 22.7


User provided reference genes

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