Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 3.4e-52 208.0 102 100.0
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 5.5e-50 200.7 102 96.1
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 9.8e-15 83.6 103 48.5
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 1.7e-14 82.8 98 50.0
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 2.2e-14 82.4 104 49.0
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 3.7e-14 81.6 104 49.0
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 4.9e-14 81.3 103 50.5
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 4.9e-14 81.3 102 47.1
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 1.8e-13 79.3 103 44.7
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 3.2e-13 78.6 108 48.1
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 4.1e-13 78.2 102 41.2
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 5.4e-13 77.8 102 48.0
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 7.0e-13 77.4 102 49.0
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.2e-12 76.6 92 50.0
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 1.2e-12 76.6 102 47.1
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 1.2e-12 76.6 104 46.2
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 1.2e-12 76.6 102 43.1
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.6e-12 76.3 106 47.2
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 1.6e-12 76.3 102 46.1
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 1.6e-12 76.3 94 46.8
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.6e-12 76.3 93 47.3
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 2.0e-12 75.9 103 45.6
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 2.7e-12 75.5 100 47.0
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 2.7e-12 75.5 93 47.3
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.7e-12 75.5 93 47.3
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 2.7e-12 75.5 103 45.6
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 3.5e-12 75.1 102 47.1
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 4.6e-12 74.7 93 49.5
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.0e-11 73.6 104 46.2
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.3e-11 73.2 104 47.1
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.3e-11 73.2 104 49.0
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.3e-11 73.2 104 49.0
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 1.7e-11 72.8 100 50.0
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 1.7e-11 72.8 100 50.0
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 3.0e-11 72.0 106 44.3
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 3.0e-11 72.0 104 46.2
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 3.9e-11 71.6 69 58.0
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 6.6e-11 70.9 93 45.2
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 6.6e-11 70.9 103 47.6
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.1e-10 70.1 103 45.6
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.1e-10 70.1 102 43.1
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 1.1e-10 70.1 102 44.1
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.1e-10 70.1 104 44.2
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.5e-10 69.7 103 45.6
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.5e-10 69.7 97 43.3
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 1.5e-10 69.7 93 44.1
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.5e-10 69.7 51 64.7
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.5e-10 68.9 100 41.0
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 2.5e-10 68.9 102 37.3
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.5e-10 68.9 102 42.2
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 3.3e-10 68.6 96 44.8
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 3.3e-10 68.6 102 47.1
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 3.3e-10 68.6 102 47.1
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 4.3e-10 68.2 102 37.3
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 4.3e-10 68.2 103 46.6
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.6e-10 67.8 98 45.9
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 5.6e-10 67.8 92 43.5
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 7.3e-10 67.4 99 44.4
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 7.3e-10 67.4 92 47.8
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 9.5e-10 67.0 102 41.2
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 1.2e-09 66.6 94 48.9
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 1.2e-09 66.6 96 44.8
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 1.2e-09 66.6 93 46.2
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.2e-09 66.6 101 42.6
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.6e-09 66.2 102 44.1
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.6e-09 66.2 105 43.8
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 2.1e-09 65.9 95 45.3
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 2.1e-09 65.9 102 39.2
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 2.1e-09 65.9 102 41.2
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 2.1e-09 65.9 96 41.7
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 2.8e-09 65.5 104 43.3
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 2.8e-09 65.5 91 46.2
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 2.8e-09 65.5 102 41.2
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 3.6e-09 65.1 102 44.1
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.6e-09 65.1 101 41.6
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 3.6e-09 65.1 94 47.9
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 4.7e-09 64.7 47 66.0
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.7e-09 64.7 47 66.0
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 4.7e-09 64.7 59 59.3
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 6.2e-09 64.3 50 64.0
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 6.2e-09 64.3 45 68.9
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 6.2e-09 64.3 45 68.9
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 6.2e-09 64.3 103 42.7
vmacro23105 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 6.2e-09 64.3 72 55.6
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 8.0e-09 63.9 100 45.0
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 8.0e-09 63.9 92 45.7
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 8.0e-09 63.9 105 42.9
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 8.0e-09 63.9 69 55.1
Lalb_Chr14g0374201 Lupinus albus HOM05D003745 ORTHO05D004215 8.0e-09 63.9 102 42.2
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 8.0e-09 63.9 92 42.4
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 1.1e-08 63.5 103 42.7
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 1.4e-08 63.2 107 44.9
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 1.4e-08 63.2 64 51.6
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 1.8e-08 62.8 89 44.9
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 1.8e-08 62.8 96 41.7
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.8e-08 62.8 103 39.8
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.8e-08 62.8 101 40.6
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 1.8e-08 62.8 89 46.1
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 2.3e-08 62.4 96 42.7
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 2.3e-08 62.4 90 42.2
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 2.3e-08 62.4 102 41.2
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 3.1e-08 62.0 100 39.0
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 3.1e-08 62.0 100 39.0
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 3.1e-08 62.0 103 39.8
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.1e-08 62.0 102 39.2
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.1e-08 62.0 102 38.2
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 3.1e-08 62.0 102 39.2
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 4.0e-08 61.6 97 46.4
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 4.0e-08 61.6 89 47.2
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.2e-08 61.2 104 41.3
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 5.2e-08 61.2 101 43.6
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 6.8e-08 60.8 100 42.0
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 6.8e-08 60.8 46 65.2
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 6.8e-08 60.8 101 40.6
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 6.8e-08 60.8 89 48.3
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 8.9e-08 60.5 100 43.0
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 8.9e-08 60.5 103 41.7
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 8.9e-08 60.5 99 40.4
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 8.9e-08 60.5 102 42.2
Gorai.002G242500 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.2e-07 60.1 104 40.4
Lalb_Chr22g0350641 Lupinus albus HOM05D003745 ORTHO05D004215 1.2e-07 60.1 102 41.2
PGR102G0577 Punica granatum HOM05D003745 ORTHO05D004215 1.2e-07 60.1 94 43.6
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.2e-07 60.1 100 36.0
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 2.0e-07 59.3 48 60.4
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 2.6e-07 58.9 96 39.6
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 2.6e-07 58.9 96 39.6
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 2.6e-07 58.9 45 62.2
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 2.6e-07 58.9 96 45.8
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 2.6e-07 58.9 100 39.0
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 2.6e-07 58.9 96 40.6
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 2.6e-07 58.9 50 62.0
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 2.6e-07 58.9 100 41.0
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 3.4e-07 58.5 96 38.5
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 3.4e-07 58.5 93 43.0
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.4e-07 58.5 45 62.2
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 3.4e-07 58.5 102 42.2
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 3.4e-07 58.5 99 36.4
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 3.4e-07 58.5 45 62.2
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 3.4e-07 58.5 84 41.7
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 3.4e-07 58.5 97 39.2
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 4.4e-07 58.2 105 41.9
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 4.4e-07 58.2 103 37.9
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 5.8e-07 57.8 41 65.9
ATR0820G192 Amborella trichopoda HOM05D003745 ORTHO05D004215 5.8e-07 57.8 92 42.4
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 5.8e-07 57.8 104 37.5
Migut.N02515 Erythranthe guttata HOM05D003745 ORTHO05D004215 5.8e-07 57.8 97 37.1
Gohir.A01G209200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.8e-07 57.8 105 41.0
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 9.8e-07 57.0 46 60.9
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 9.8e-07 57.0 102 41.2
BraA01t02615Z Brassica rapa HOM05D003745 ORTHO05D004215 1.7e-06 56.2 100 36.0
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 1.7e-06 56.2 102 39.2
Peaxi162Scf00110g02023 Petunia axillaris HOM05D003745 ORTHO05D004215 2.2e-06 55.8 63 47.6
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 3.7e-06 55.1 95 38.9
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 3.7e-06 55.1 98 39.8
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 4.9e-06 54.7 102 41.2
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 6.4e-06 54.3 47 57.4


User provided reference genes

Program Settings