Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G0870 Papaver somniferum HOM05D005589 ORTHO05D006948 0.0e+00 1426.8 820 100.0
PSO339G3114 Papaver somniferum HOM05D005589 ORTHO05D006948 0.0e+00 1383.2 821 97.6
Aqoxy2G01955 Aquilegia oxysepala HOM05D005589 ORTHO05D006948 1.1e-305 1053.1 822 68.7
GSVIVG01025056001 Vitis vinifera HOM05D005589 ORTHO05D006948 4.7e-301 1037.7 820 67.8
MBI05_g07866_MAGBIO Magnolia biondii HOM05D005589 ORTHO05D006948 2.4e-297 1025.4 841 66.6
RcHm_v2.0_Chr5g0062341 Rosa chinensis HOM05D005589 ORTHO05D006948 1.0e-295 1020.0 813 66.3
Cfa011427 Carpinus fangiana HOM05D005589 ORTHO05D006948 1.9e-294 1015.8 820 66.3
FAN16G1588 Fragaria x ananassa HOM05D005589 ORTHO05D006948 2.6e-291 1005.4 811 65.2
CiPaw.13G101800 Carya illinoinensis HOM05D005589 ORTHO05D006948 2.2e-290 1002.3 819 65.7
FvH4_3g34630 Fragaria vesca HOM05D005589 ORTHO05D006948 3.7e-290 1001.5 812 64.9
CSS0045601 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 4.1e-289 998.0 822 65.8
FAN11G1618 Fragaria x ananassa HOM05D005589 ORTHO05D006948 7.0e-289 997.3 812 65.0
MD03G1103200 Malus domestica HOM05D005589 ORTHO05D006948 2.0e-288 995.7 816 65.4
Rhsim13G0088500 Rhododendron simsii HOM05D005589 ORTHO05D006948 2.0e-288 995.7 819 65.3
Atru.chr3.3796 Acer truncatum HOM05D005589 ORTHO05D006948 1.0e-287 993.4 819 64.6
MD11G1116800 Malus domestica HOM05D005589 ORTHO05D006948 1.3e-287 993.0 817 64.7
Ciclev10027829m.g Citrus clementina HOM05D005589 ORTHO05D006948 3.9e-287 991.5 820 64.9
Haze_24005 Corylus avellana HOM05D005589 ORTHO05D006948 3.9e-287 991.5 856 63.6
FAN25G3171 Fragaria x ananassa HOM05D005589 ORTHO05D006948 3.3e-286 988.4 818 64.4
TAR623G1588 Trochodendron aralioides HOM05D005589 ORTHO05D006948 3.3e-286 988.4 758 70.8
Dinv26284 Davidia involucrata HOM05D005589 ORTHO05D006948 5.6e-286 987.6 788 68.0
CANSAT54G1803 Cannabis sativa HOM05D005589 ORTHO05D006948 1.6e-285 986.1 816 66.9
Thecc.09G329900 Theobroma cacao HOM05D005589 ORTHO05D006948 8.1e-285 983.8 819 64.2
TWI31G1338 Tripterygium wilfordii HOM05D005589 ORTHO05D006948 2.3e-284 982.2 815 65.8
Duzib168G1570 Durio zibethinus HOM05D005589 ORTHO05D006948 1.2e-283 979.9 819 64.6
Ah.08g215000 Amaranthus hybridus HOM05D005589 ORTHO05D006948 3.4e-283 978.4 819 64.2
Nitab4.5_0007030g0040 Nicotiana tabacum HOM05D005589 ORTHO05D006948 1.7e-282 976.1 813 65.4
FAN21G0436 Fragaria x ananassa HOM05D005589 ORTHO05D006948 1.1e-281 973.4 815 63.2
Cc01_g12110 Coffea canephora HOM05D005589 ORTHO05D006948 2.4e-281 972.2 825 64.4
Potri.001G234300 Populus trichocarpa HOM05D005589 ORTHO05D006948 3.2e-281 971.8 821 65.7
Solyc11g072950.3 Solanum lycopersicum HOM05D005589 ORTHO05D006948 3.2e-281 971.8 819 63.1
Sopen11g030610 Solanum pennellii HOM05D005589 ORTHO05D006948 2.1e-280 969.1 819 63.0
Gohir.D05G098801 Gossypium hirsutum HOM05D005589 ORTHO05D006948 2.7e-280 968.8 815 64.8
Gorai.009G102500 Gossypium raimondii HOM05D005589 ORTHO05D006948 1.3e-279 966.5 815 64.5
Nitab4.5_0002684g0170 Nicotiana tabacum HOM05D005589 ORTHO05D006948 2.3e-279 965.7 815 62.8
Prupe.6G087200 Prunus persica HOM05D005589 ORTHO05D006948 2.3e-279 965.7 784 66.1
Eucgr.J02099 Eucalyptus grandis HOM05D005589 ORTHO05D006948 3.0e-279 965.3 819 63.6
Hund05020 Selenicereus undatus HOM05D005589 ORTHO05D006948 3.0e-279 965.3 821 63.3
Ca_19212_v3 Cicer arietinum L. HOM05D005589 ORTHO05D006948 3.9e-279 964.9 819 63.9
Gohir.A05G098800 Gossypium hirsutum HOM05D005589 ORTHO05D006948 1.5e-278 963.0 815 64.4
CAN.G755.19 Capsicum annuum HOM05D005589 ORTHO05D006948 5.6e-278 961.1 814 67.7
CSS0023618 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 7.3e-278 960.7 822 64.0
EL10Ac7g15939 Beta vulgaris HOM05D005589 ORTHO05D006948 1.2e-277 959.9 818 62.6
MELO3C020678.2 Cucumis melo HOM05D005589 ORTHO05D006948 1.2e-277 959.9 815 64.9
Lj1A176T55 Lonicera japonica HOM05D005589 ORTHO05D006948 1.8e-276 956.1 821 63.8
Sed0009383 Sechium edule HOM05D005589 ORTHO05D006948 4.0e-276 954.9 814 66.1
PGSC0003DMG400015549 Solanum tuberosum HOM05D005589 ORTHO05D006948 8.9e-276 953.7 818 69.4
Lalb_Chr19g0137591 Lupinus albus HOM05D005589 ORTHO05D006948 1.2e-275 953.4 822 62.4
CsaV3_1G033840 Cucumis sativus L. HOM05D005589 ORTHO05D006948 3.4e-275 951.8 815 64.2
Peaxi162Scf00411g00711 Petunia axillaris HOM05D005589 ORTHO05D006948 4.4e-275 951.4 825 64.7
ClCG03G001750 Citrullus lanatus HOM05D005589 ORTHO05D006948 1.3e-274 949.9 815 63.1
COL.COLO4_18425 Corchorus olitorius HOM05D005589 ORTHO05D006948 2.9e-274 948.7 819 63.6
Psat7g220760 Pisum sativum HOM05D005589 ORTHO05D006948 1.1e-273 946.8 814 63.6
Sabra16G0140600 Salix brachista HOM05D005589 ORTHO05D006948 9.2e-273 943.7 899 60.5
TPR.G2986 Trifolium pratense HOM05D005589 ORTHO05D006948 1.2e-272 943.3 824 63.2
Lj3g0027543 Lotus japonicus HOM05D005589 ORTHO05D006948 7.8e-272 940.6 821 62.9
DCAR_015589 Daucus carota HOM05D005589 ORTHO05D006948 1.1e-270 936.8 829 62.5
Oeu040274.2 Olea europaea HOM05D005589 ORTHO05D006948 9.6e-270 933.7 844 60.7
arahy.Tifrunner.gnm1.ann1.3ELA68 Arachis hypogaea HOM05D005589 ORTHO05D006948 1.4e-268 929.9 861 66.4
PGR119G2409 Punica granatum HOM05D005589 ORTHO05D006948 5.2e-268 927.9 820 60.9
vmacro03127 Vaccinium macrocarpon HOM05D005589 ORTHO05D006948 6.9e-268 927.5 820 62.1
Glyma.12G074800 Glycine max HOM05D005589 ORTHO05D006948 4.4e-267 924.9 816 62.5
MSTRG.21170 Avicennia marina HOM05D005589 ORTHO05D006948 1.7e-266 922.9 822 61.4
Migut.D02148 Erythranthe guttata HOM05D005589 ORTHO05D006948 2.9e-266 922.2 815 60.9
Lsat_1_v5_gn_9_21601 Lactuca sativa HOM05D005589 ORTHO05D006948 3.8e-266 921.8 816 63.7
THA.LOC104799457 Tarenaya hassleriana HOM05D005589 ORTHO05D006948 4.2e-265 918.3 822 60.7
Phvul.011G069300 Phaseolus vulgaris HOM05D005589 ORTHO05D006948 1.6e-264 916.4 821 60.7
Thhalv10002404m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 3.5e-264 915.2 817 60.0
AT3G46220 Arabidopsis thaliana HOM05D005589 ORTHO05D006948 1.7e-263 912.9 817 60.7
HanXRQChr08g0228221 Helianthus annuus HOM05D005589 ORTHO05D006948 1.7e-263 912.9 810 64.9
VMungo1127G2244 Vigna mungo HOM05D005589 ORTHO05D006948 6.6e-263 911.0 821 60.8
Carub.0005s1206 Capsella rubella HOM05D005589 ORTHO05D006948 4.3e-262 908.3 817 59.9
Sp5g15410 Schrenkiella parvula HOM05D005589 ORTHO05D006948 5.6e-262 907.9 817 60.1
Hma1.2p1_0846F.1_g227810 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 1.3e-261 906.7 752 64.4
AL5G25010 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 4.8e-261 904.8 817 59.7
ECA247G1976 Erigeron canadensis HOM05D005589 ORTHO05D006948 2.4e-260 902.5 814 64.9
A06p20980 Brassica napus HOM05D005589 ORTHO05D006948 9.0e-260 900.6 821 59.6
CARHR154660 Cardamine hirsuta HOM05D005589 ORTHO05D006948 4.5e-259 898.3 816 59.2
C03p70540 Brassica napus HOM05D005589 ORTHO05D006948 5.8e-259 897.9 821 59.3
SGA_v2.0_scaffold394G50722 Striga asiatica HOM05D005589 ORTHO05D006948 5.8e-259 897.9 848 58.8
AUR62001854 Chenopodium quinoa HOM05D005589 ORTHO05D006948 3.8e-258 895.2 926 55.0
AUR62009648 Chenopodium quinoa HOM05D005589 ORTHO05D006948 1.4e-257 893.3 833 59.1
Aa31LG4G15320 Aethionema arabicum HOM05D005589 ORTHO05D006948 5.4e-257 891.3 817 59.0
Medtr4g062090 Medicago truncatula HOM05D005589 ORTHO05D006948 1.3e-255 886.7 822 60.3
Os05g0117600 Oryza sativa ssp. japonica HOM05D005589 ORTHO05D006948 8.7e-255 884.0 813 57.8
BolC3t19334H Brassica oleracea HOM05D005589 ORTHO05D006948 4.8e-253 878.2 837 57.9
Zm00001eb266020 Zea mays HOM05D005589 ORTHO05D006948 6.2e-253 877.9 814 57.2
BraA06t25186Z Brassica rapa HOM05D005589 ORTHO05D006948 2.4e-252 875.9 864 56.8
Manes.04G029200 Manihot esculenta HOM05D005589 ORTHO05D006948 4.8e-245 851.7 763 60.3
HPP92_025619 Vanilla planifolia HOM05D005589 ORTHO05D006948 2.5e-233 812.8 863 52.6
Thhalv10002414m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 1.4e-223 780.4 817 54.5
Sc21g0005390 Simmondsia chinensis HOM05D005589 ORTHO05D006948 2.4e-220 769.6 670 62.1
unitig_37.g12679 Utricularia gibba HOM05D005589 ORTHO05D006948 1.4e-215 753.8 815 51.9
Glyma.11G145645 Glycine max HOM05D005589 ORTHO05D006948 1.6e-200 703.7 668 63.2
Cpa.g.sc252.12 Carica papaya HOM05D005589 ORTHO05D006948 5.5e-193 678.7 826 51.2
Actinidia07078 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.9e-185 653.7 594 60.6
arahy.Tifrunner.gnm1.ann1.0DF5JX Arachis hypogaea HOM05D005589 ORTHO05D006948 4.0e-175 619.4 626 65.5
AagrBONN_evm.TU.Sc2ySwM_228.2492 Anthoceros agrestis HOM05D005589 ORTHO05D006948 1.5e-174 617.5 758 46.0
Pp3c8_20630 Physcomitrium patens HOM05D005589 ORTHO05D006948 1.9e-172 610.5 823 44.8
SMO196G0111 Selaginella moellendorffii HOM05D005589 ORTHO05D006948 1.7e-170 604.0 801 45.9
CBR_g29437 Chara braunii HOM05D005589 ORTHO05D006948 8.7e-154 548.5 778 42.9
CBR_g777 Chara braunii HOM05D005589 ORTHO05D006948 2.1e-152 543.9 863 38.5
ATR0759G074 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.9e-145 520.8 377 70.3
Mapoly0007s0143 Marchantia polymorpha HOM05D005589 ORTHO05D006948 6.2e-144 515.8 835 37.8
SalBow3G3271 Salvia bowleyana HOM05D005589 ORTHO05D006948 1.1e-135 488.4 324 75.9
BcaC01g01924 Brassica carinata HOM05D005589 ORTHO05D006948 9.6e-129 465.3 544 50.0
Hma1.2p1_0846F.1_g227820 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 1.6e-123 448.0 327 70.3
SalBow3G0177 Salvia bowleyana HOM05D005589 ORTHO05D006948 4.1e-119 433.3 491 51.3
Actinidia37259 Actinidia chinensis HOM05D005589 ORTHO05D006948 5.0e-109 399.8 269 74.3
CDE02G1253 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 2.3e-106 391.0 275 72.0
SEGI_37108 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 1.0e-101 375.6 275 66.5
AL1G56500 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 1.5e-97 361.7 432 51.9
AL1G56480 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 1.8e-82 311.6 312 54.5
CSS0044614 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 5.4e-71 273.5 241 63.9
SEGI_34947 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 1.6e-59 235.3 353 41.4
Cre16.g686650 Chlamydomonas reinhardtii HOM05D005589 ORTHO05D006948 1.2e-57 229.2 806 30.5
arahy.Tifrunner.gnm1.ann1.35TLEJ Arachis hypogaea HOM05D005589 ORTHO05D006948 1.1e-42 179.5 215 49.3
CSS0011793 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 1.7e-40 172.2 163 58.3
PRCOL_00006228 Prasinoderma coloniale HOM05D005589 ORTHO05D006948 5.4e-39 167.2 812 24.6
Sc21g0005380 Simmondsia chinensis HOM05D005589 ORTHO05D006948 6.0e-38 163.7 122 70.5
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 2.4e-34 151.8 93 79.6
BcaB01g01018 Brassica carinata HOM05D005589 ORTHO05D006948 5.3e-34 150.6 119 64.7
ATR0759G057 Amborella trichopoda HOM05D005589 ORTHO05D006948 2.6e-33 148.3 101 75.2
ATR0759G002 Amborella trichopoda HOM05D005589 ORTHO05D006948 3.5e-30 137.9 127 55.1
arahy.Tifrunner.gnm1.ann1.HF8MSC Arachis hypogaea HOM05D005589 ORTHO05D006948 4.3e-28 131.0 111 64.0
Actinidia37258 Actinidia chinensis HOM05D005589 ORTHO05D006948 6.4e-24 117.1 70 85.7
arahy.Tifrunner.gnm1.ann1.NIGF9J Arachis hypogaea HOM05D001394 ORTHO05D001237 1.1e-23 116.3 69 82.6
Actinidia37260 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.6e-22 112.5 134 47.8
Gohir.D08G115100 Gossypium hirsutum HOM05D005589 ORTHO05D047064 1.6e-19 102.4 69 72.5
Gorai.004G124000 Gossypium raimondii HOM05D005589 ORTHO05D047064 1.6e-19 102.4 69 72.5
SEGI_32388 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 3.8e-16 91.3 79 62.0
arahy.Tifrunner.gnm1.ann1.DV3IGD Arachis hypogaea HOM05D005589 ORTHO05D006948 8.4e-16 90.1 86 60.5
arahy.Tifrunner.gnm1.ann1.LY30IG Arachis hypogaea HOM05D005589 ORTHO05D006948 6.2e-11 73.9 160 37.5
HanXRQChr10g0314321 Helianthus annuus HOM05D005589 ORTHO05D006948 1.1e-10 73.2 63 60.3
CDE02G0022 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 1.0e-08 66.6 47 72.3
Aa31LG4G15080 Aethionema arabicum HOM05D005589 ORTHO05D006948 8.4e-08 63.5 136 36.0


User provided reference genes

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