Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 2.4e-149 532.3 306 100.0
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 9.7e-143 510.4 306 97.1
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 4.5e-71 272.3 320 50.0
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 4.6e-68 262.3 320 50.6
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 2.6e-63 246.5 320 48.1
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 1.3e-59 234.2 319 47.0
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 1.3e-57 227.6 321 45.2
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 3.7e-57 226.1 324 44.8
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 2.6e-55 219.9 357 42.3
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 5.0e-54 215.7 321 44.5
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 1.1e-53 214.5 321 43.6
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 1.4e-53 214.2 319 44.5
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 3.2e-53 213.0 318 44.0
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 1.0e-51 208.0 322 43.5
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 1.4e-51 207.6 321 41.7
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 5.1e-51 205.7 321 42.4
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 5.1e-51 205.7 321 42.4
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 6.7e-51 205.3 299 44.1
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 1.1e-50 204.5 327 42.5
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.1e-48 198.0 320 42.5
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 3.1e-48 196.4 324 42.6
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 5.3e-48 195.7 326 41.4
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 1.2e-47 194.5 324 41.0
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 5.9e-47 192.2 326 40.5
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 5.9e-47 192.2 320 40.3
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 7.7e-47 191.8 326 41.1
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 1.7e-46 190.7 327 41.0
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 2.9e-46 189.9 321 39.9
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 2.9e-46 189.9 374 37.2
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 3.8e-46 189.5 322 40.1
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 1.4e-45 187.6 321 39.6
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 2.5e-45 186.8 331 39.9
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 3.2e-45 186.4 322 40.7
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 4.2e-45 186.0 326 40.2
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 7.2e-45 185.3 321 40.8
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 2.7e-44 183.3 311 40.5
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 4.7e-44 182.6 318 39.6
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 3.0e-43 179.9 327 40.7
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 4.4e-42 176.0 321 38.0
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 4.4e-42 176.0 321 40.8
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 4.4e-42 176.0 318 39.6
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 5.7e-42 175.6 325 38.5
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 5.7e-42 175.6 252 44.0
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 7.4e-42 175.3 425 34.1
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 1.3e-41 174.5 237 44.3
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 2.8e-41 173.3 254 45.3
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 8.2e-41 171.8 323 39.0
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 3.1e-40 169.9 313 42.5
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 7.0e-40 168.7 432 33.1
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 1.2e-39 167.9 328 37.2
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 1.2e-39 167.9 305 38.7
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 2.6e-39 166.8 305 38.4
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 3.5e-39 166.4 319 37.0
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 4.5e-39 166.0 290 40.0
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 5.9e-39 165.6 324 38.0
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.0e-38 164.9 321 37.1
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 2.9e-38 163.3 314 36.0
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 8.5e-38 161.8 323 37.5
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.9e-37 160.6 293 39.6
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.2e-36 157.9 241 43.2
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.2e-36 157.9 241 43.2
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 1.2e-36 157.9 320 36.9
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 4.7e-36 156.0 241 43.6
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 1.0e-35 154.8 304 37.2
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 1.4e-35 154.5 246 42.7
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 1.4e-35 154.5 301 38.9
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 2.3e-35 153.7 229 45.4
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 3.9e-35 152.9 297 40.7
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 5.2e-35 152.5 293 38.6
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 8.8e-35 151.8 333 36.6
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.1e-34 151.4 244 43.0
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 1.5e-34 151.0 380 37.1
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 2.6e-34 150.2 323 37.2
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 3.3e-34 149.8 320 37.2
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 3.3e-34 149.8 323 34.7
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 7.4e-34 148.7 258 41.1
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 7.4e-34 148.7 299 39.5
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 2.2e-33 147.1 309 42.1
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 2.4e-32 143.7 333 35.4
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 3.1e-32 143.3 236 41.9
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 5.3e-32 142.5 322 33.9
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 7.0e-32 142.1 290 36.6
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 9.1e-32 141.7 240 47.1
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 1.6e-31 141.0 239 39.7
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 1.6e-31 141.0 236 41.1
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 4.5e-31 139.4 294 37.4
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 7.7e-31 138.7 291 34.0
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 1.0e-30 138.3 288 43.1
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 2.9e-30 136.7 261 42.1
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 5.0e-30 136.0 316 33.5
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.9e-29 134.0 279 43.0
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 2.5e-29 133.7 330 32.4
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 3.2e-29 133.3 211 38.9
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 4.2e-29 132.9 336 32.7
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 4.2e-29 132.9 168 44.0
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 1.6e-28 131.0 261 41.4
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 2.1e-28 130.6 167 47.9
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 8.0e-28 128.6 190 41.6
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 1.0e-27 128.3 261 40.6
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 1.4e-27 127.9 245 38.4
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 1.4e-27 127.9 192 43.8
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 2.3e-27 127.1 265 33.6
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 6.8e-27 125.6 261 35.6
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 2.6e-26 123.6 232 38.4
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 3.4e-26 123.2 242 34.3
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 1.3e-25 121.3 258 33.3
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 1.7e-25 120.9 331 32.6
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 2.2e-25 120.6 330 30.9
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 2.2e-25 120.6 239 36.8
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.4e-24 117.9 293 33.8
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 9.1e-24 115.2 331 31.4
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 9.1e-24 115.2 331 31.4
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 1.2e-23 114.8 333 30.9
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 2.0e-23 114.0 219 37.4
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 7.7e-23 112.1 331 30.8
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 8.5e-22 108.6 331 30.5
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 2.5e-21 107.1 313 32.6
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 9.4e-21 105.1 204 37.7
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 1.5e-18 97.8 141 41.8
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 3.4e-18 96.7 105 49.5
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 3.4e-18 96.7 176 39.8
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 5.7e-18 95.9 133 42.9
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 1.7e-17 94.4 181 36.5
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 1.7e-17 94.4 208 36.5
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 2.8e-17 93.6 289 31.8
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 8.3e-17 92.0 203 34.0
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 1.4e-16 91.3 209 35.9
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.8e-16 90.9 214 33.6
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 4.1e-16 89.7 145 41.4
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 2.7e-15 87.0 227 30.4
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 3.5e-15 86.7 336 28.6
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 3.5e-15 86.7 331 28.4
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 4.5e-15 86.3 332 28.9
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 6.6e-14 82.4 231 32.9
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 1.6e-12 77.8 334 26.6
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 4.7e-12 76.3 310 28.1
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 5.2e-11 72.8 84 53.6
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 5.7e-10 69.3 84 46.4
Dinv03808 Davidia involucrata HOM05D005413 ORTHO05D006536 5.7e-10 69.3 96 40.6
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 4.9e-09 66.2 68 48.5
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 8.6e-06 55.5 69 46.4
Sed0023885 Sechium edule HOM05D005413 ORTHO05D006536 8.6e-06 55.5 61 47.5


User provided reference genes

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