Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 5.0e-207 724.2 358 100.0
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 7.8e-200 700.3 358 96.6
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 3.0e-151 538.9 358 73.5
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 4.8e-149 531.6 364 72.3
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 7.1e-145 517.7 359 71.3
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 6.0e-144 514.6 355 70.7
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 1.0e-143 513.8 361 71.2
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 2.3e-143 512.7 355 70.7
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 2.5e-142 509.2 356 70.2
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 5.7e-142 508.1 364 69.2
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 3.7e-141 505.4 360 69.7
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 8.2e-141 504.2 360 68.6
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 1.1e-140 503.8 362 68.8
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 1.8e-140 503.1 360 68.6
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 1.8e-140 503.1 355 70.4
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 2.4e-140 502.7 362 68.0
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 4.1e-140 501.9 359 67.1
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 6.9e-140 501.1 355 69.3
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 9.0e-140 500.7 362 68.0
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 1.5e-139 500.0 359 69.1
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 2.0e-139 499.6 362 68.2
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 2.6e-139 499.2 360 67.8
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 2.6e-139 499.2 360 67.8
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 2.6e-139 499.2 358 69.6
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 3.4e-139 498.8 360 67.8
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 3.4e-139 498.8 360 67.8
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 3.4e-139 498.8 361 68.7
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 4.5e-139 498.4 361 68.7
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 5.9e-139 498.0 359 69.6
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 1.3e-138 496.9 356 68.5
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 1.7e-138 496.5 366 66.4
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 1.7e-138 496.5 360 68.6
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 5.0e-138 495.0 360 67.8
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 1.4e-137 493.4 361 68.4
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 1.9e-137 493.0 362 69.1
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 2.5e-137 492.7 342 70.5
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 4.2e-137 491.9 362 68.0
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 7.2e-137 491.1 330 73.3
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 1.2e-136 490.3 362 68.0
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 2.1e-136 489.6 359 66.0
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 2.7e-136 489.2 364 67.6
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 2.7e-136 489.2 356 68.8
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 4.6e-136 488.4 355 67.9
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 1.0e-135 487.3 356 68.3
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 1.3e-135 486.9 361 67.3
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 2.3e-135 486.1 358 67.3
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 3.0e-135 485.7 379 64.6
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 5.1e-135 485.0 376 64.1
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 8.7e-135 484.2 358 67.3
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 1.1e-134 483.8 363 66.7
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 2.5e-134 482.6 359 67.1
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 4.3e-134 481.9 384 63.8
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 5.7e-134 481.5 368 66.6
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 5.7e-134 481.5 371 64.4
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 1.7e-133 479.9 368 66.3
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 1.7e-133 479.9 354 67.5
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 2.8e-133 479.2 369 65.6
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 8.2e-133 477.6 365 66.3
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 3.1e-132 475.7 363 67.2
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 3.8e-130 468.8 330 69.7
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 6.5e-130 468.0 412 60.0
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.4e-129 466.8 356 65.7
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 3.2e-129 465.7 362 65.7
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 3.2e-129 465.7 329 70.2
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 7.2e-129 464.5 356 65.4
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.2e-128 463.8 356 65.4
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 2.1e-128 463.0 334 68.6
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 3.3e-126 455.7 359 65.7
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 4.4e-126 455.3 357 66.4
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 9.7e-126 454.1 360 63.1
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 8.2e-125 451.1 365 64.4
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 6.9e-124 448.0 363 62.5
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 2.6e-123 446.0 330 66.1
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 2.2e-122 443.0 352 63.9
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 8.5e-122 441.0 433 56.6
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 2.1e-120 436.4 364 61.5
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 1.0e-119 434.1 282 74.5
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 1.8e-119 433.3 365 64.1
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 6.7e-119 431.4 337 66.8
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 2.0e-118 429.9 356 63.2
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 3.5e-115 419.1 301 68.1
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 1.3e-114 417.2 263 77.2
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 8.0e-112 407.9 339 61.7
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 8.0e-112 407.9 368 59.8
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 5.7e-110 401.7 353 59.2
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 7.0e-108 394.8 343 59.8
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.2e-104 384.0 356 56.7
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 4.7e-104 382.1 349 55.3
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 4.0e-103 379.0 261 72.4
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 8.8e-103 377.9 270 71.5
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 4.4e-102 375.6 262 70.6
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 4.4e-102 375.6 331 55.6
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 1.7e-101 373.6 260 70.8
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 1.7e-101 373.6 264 71.6
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 1.3e-98 364.0 265 70.6
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 8.6e-98 361.3 301 59.8
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 2.5e-97 359.8 271 67.2
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 9.5e-97 357.8 257 70.0
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 9.5e-97 357.8 320 57.8
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 1.2e-94 350.9 250 70.0
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 1.3e-93 347.4 259 68.3
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 3.6e-88 329.3 394 44.9
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 6.1e-88 328.6 335 53.4
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 9.8e-86 321.2 207 78.7
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 2.4e-76 290.0 339 46.3
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 3.5e-75 286.2 188 75.0
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 2.8e-72 276.6 339 45.4
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 9.2e-68 261.5 186 67.7
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 6.8e-63 245.4 460 35.4
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 1.5e-57 227.6 142 77.5
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 2.9e-53 213.4 219 51.6
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 1.3e-50 204.5 232 46.1
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 9.6e-49 198.4 244 46.7
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 4.3e-41 172.9 148 60.8
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 3.0e-34 150.2 151 53.6
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 6.7e-34 149.1 321 32.1
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 9.0e-31 138.7 144 52.8
SEGI_25003 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 9.0e-31 138.7 116 56.9
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 2.9e-29 133.7 111 64.9
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 1.3e-26 124.8 302 32.5
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.8e-26 124.4 136 51.5
Rhsim08G0085000 Rhododendron simsii HOM05D006412 ORTHO05D008025 1.1e-23 115.2 96 57.3
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 3.8e-21 106.7 74 68.9
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 1.1e-20 105.1 81 63.0
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.4e-20 104.8 91 60.4
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 4.2e-20 103.2 72 68.1
SGA_v2.0_scaffold9G04970 Striga asiatica HOM05D006412 ORTHO05D008025 9.4e-20 102.1 98 56.1
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 2.8e-08 63.9 104 32.7
Cfa024956 Carpinus fangiana HOM05D003894 ORTHO05D004584 8.2e-08 62.4 184 28.3
Potri.003G078000 Populus trichocarpa HOM05D003894 ORTHO05D004584 4.1e-07 60.1 138 31.9
Sabra03G0048400 Salix brachista HOM05D003894 ORTHO05D004584 5.3e-07 59.7 138 31.9
Oeu044418.1 Olea europaea HOM05D005388 ORTHO05D006281 9.1e-07 58.9 165 27.3
SalBow8G2877 Salvia bowleyana HOM05D005388 ORTHO05D006281 1.2e-06 58.5 112 32.1
Gohir.A03G007600 Gossypium hirsutum HOM05D003894 ORTHO05D004584 1.5e-06 58.2 108 29.6
A06p45100 Brassica napus HOM05D003894 ORTHO05D004584 3.5e-06 57.0 96 33.3
BraA06t27379Z Brassica rapa HOM05D003894 ORTHO05D004584 3.5e-06 57.0 96 33.3
Gorai.003G172100 Gossypium raimondii HOM05D003894 ORTHO05D004584 3.5e-06 57.0 108 29.6
GSVIVG01004722001 Vitis vinifera HOM05D003894 ORTHO05D004584 4.5e-06 56.6 141 29.8
FAN04G2823 Fragaria x ananassa HOM05D003894 ORTHO05D004584 5.9e-06 56.2 130 29.2
Eucgr.D02094 Eucalyptus grandis HOM05D003894 ORTHO05D004584 7.7e-06 55.8 130 28.5
FAN08G0890 Fragaria x ananassa HOM05D003894 ORTHO05D004584 7.7e-06 55.8 130 29.2
FAN18G1468 Fragaria x ananassa HOM05D003894 ORTHO05D004584 7.7e-06 55.8 130 29.2
HanXRQChr01g0005041 Helianthus annuus HOM05D002341 ORTHO05D018003 7.7e-06 55.8 30 83.3
Pp3s32_101 Physcomitrium patens HOM05D005388 ORTHO05D006281 7.7e-06 55.8 127 28.3
RcHm_v2.0_Chr7g0203621 Rosa chinensis HOM05D003894 ORTHO05D004584 7.7e-06 55.8 130 29.2


User provided reference genes

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