Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 3.9e-102 374.8 189 100.0
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 4.8e-92 341.3 180 95.6
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 5.4e-43 178.3 182 53.8
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 7.1e-43 177.9 175 54.3
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 6.0e-42 174.9 174 55.7
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 7.8e-42 174.5 175 54.3
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 1.0e-41 174.1 173 53.8
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 1.0e-41 174.1 174 53.4
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 2.3e-41 172.9 173 54.3
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 2.3e-41 172.9 171 56.1
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 3.0e-41 172.6 175 56.0
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 3.0e-41 172.6 174 54.0
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 5.1e-41 171.8 174 54.6
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 8.7e-41 171.0 198 51.0
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 1.1e-40 170.6 173 51.4
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 1.9e-40 169.9 172 52.3
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 1.9e-40 169.9 174 52.9
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 2.5e-40 169.5 172 52.9
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 2.5e-40 169.5 171 52.6
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 2.5e-40 169.5 188 51.1
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 3.3e-40 169.1 182 51.1
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 3.3e-40 169.1 175 54.9
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 3.3e-40 169.1 175 54.9
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 4.3e-40 168.7 172 53.5
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 5.6e-40 168.3 175 54.9
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 5.6e-40 168.3 172 52.9
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 5.6e-40 168.3 183 50.3
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 5.6e-40 168.3 183 50.3
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 5.6e-40 168.3 177 52.5
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 5.6e-40 168.3 183 52.5
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 7.3e-40 167.9 175 53.1
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 7.3e-40 167.9 177 52.5
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 7.3e-40 167.9 177 52.5
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 9.6e-40 167.5 175 53.7
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 1.2e-39 167.2 176 49.4
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 1.2e-39 167.2 178 52.2
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.2e-39 167.2 177 52.5
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 2.1e-39 166.4 178 51.7
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 2.1e-39 166.4 177 50.3
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 2.8e-39 166.0 181 49.7
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 2.8e-39 166.0 184 50.0
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.6e-39 165.6 177 52.0
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 4.7e-39 165.2 176 55.1
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 8.1e-39 164.5 174 49.4
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.1e-38 164.1 176 52.3
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 1.1e-38 164.1 180 49.4
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 1.4e-38 163.7 177 51.4
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 1.4e-38 163.7 176 51.7
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 2.4e-38 162.9 181 50.8
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 2.4e-38 162.9 181 50.8
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 2.4e-38 162.9 181 50.8
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 2.4e-38 162.9 172 52.3
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 4.0e-38 162.2 176 53.4
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 5.3e-38 161.8 181 50.8
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 5.3e-38 161.8 181 50.8
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 5.3e-38 161.8 176 50.0
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 6.9e-38 161.4 170 51.8
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 6.9e-38 161.4 184 50.5
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 6.9e-38 161.4 177 50.8
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 9.0e-38 161.0 182 48.9
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 9.0e-38 161.0 182 48.9
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 9.0e-38 161.0 172 52.3
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 1.2e-37 160.6 181 48.1
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 1.2e-37 160.6 188 46.8
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 2.0e-37 159.8 173 52.0
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 2.6e-37 159.5 174 54.6
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 3.4e-37 159.1 181 50.3
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 3.4e-37 159.1 174 51.1
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 4.4e-37 158.7 175 52.6
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 5.8e-37 158.3 175 50.3
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 7.6e-37 157.9 172 52.9
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 7.6e-37 157.9 172 52.9
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 9.9e-37 157.5 180 50.6
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 9.9e-37 157.5 175 51.4
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 9.9e-37 157.5 175 51.4
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 9.9e-37 157.5 180 49.4
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 1.3e-36 157.1 189 47.1
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 1.7e-36 156.8 191 49.2
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 2.2e-36 156.4 180 48.9
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 2.2e-36 156.4 176 52.3
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 4.9e-36 155.2 177 46.3
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 6.4e-36 154.8 173 52.0
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 1.1e-35 154.1 174 53.4
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 3.2e-35 152.5 189 45.5
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 3.2e-35 152.5 171 51.5
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 4.2e-35 152.1 175 48.6
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 5.4e-35 151.8 177 50.8
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 5.4e-35 151.8 153 54.9
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 5.4e-35 151.8 179 51.4
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 7.1e-35 151.4 175 48.6
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 7.1e-35 151.4 174 50.0
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 7.1e-35 151.4 178 50.6
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 9.3e-35 151.0 117 62.4
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 1.6e-34 150.2 180 48.3
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 1.6e-34 150.2 180 48.3
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.6e-34 150.2 166 47.6
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.6e-34 150.2 177 49.2
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 1.6e-34 150.2 161 52.2
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 2.1e-34 149.8 177 49.2
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 2.7e-34 149.4 90 72.2
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 2.7e-34 149.4 142 59.2
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 3.5e-34 149.1 202 45.0
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 3.5e-34 149.1 180 50.0
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 3.5e-34 149.1 177 49.7
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 3.5e-34 149.1 232 41.4
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 4.6e-34 148.7 180 46.7
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 7.8e-34 147.9 182 45.6
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 7.8e-34 147.9 182 45.6
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 7.8e-34 147.9 176 46.6
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 7.8e-34 147.9 118 61.0
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 1.0e-33 147.5 179 50.8
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 1.3e-33 147.1 180 48.3
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 1.3e-33 147.1 180 48.3
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 1.3e-33 147.1 177 48.6
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 1.7e-33 146.7 186 45.2
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 1.7e-33 146.7 118 60.2
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 1.7e-33 146.7 175 46.9
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 2.3e-33 146.4 180 50.6
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 3.9e-33 145.6 174 49.4
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 3.9e-33 145.6 182 46.7
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 6.6e-33 144.8 185 45.4
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 1.1e-32 144.1 187 44.4
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 1.1e-32 144.1 173 50.3
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 3.3e-32 142.5 122 55.7
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 7.3e-32 141.4 194 43.3
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 7.3e-32 141.4 158 51.3
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 4.8e-31 138.7 177 47.5
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 6.2e-31 138.3 108 64.8
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 1.4e-30 137.1 179 48.0
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 1.4e-30 137.1 157 47.8
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 3.1e-30 136.0 181 45.9
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 5.3e-30 135.2 177 46.3
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 1.5e-29 133.7 188 44.7
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 9.9e-29 131.0 243 36.6
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 1.7e-28 130.2 163 50.3
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 6.4e-28 128.3 87 65.5
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 2.7e-26 122.9 131 48.9
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 2.3e-25 119.8 134 47.8
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 8.7e-25 117.9 189 42.9
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 1.1e-24 117.5 87 59.8
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 1.9e-24 116.7 151 44.4
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 3.3e-24 115.9 182 41.2
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 3.3e-24 115.9 176 42.0
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.3e-23 114.0 177 41.8
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 3.7e-23 112.5 169 40.2
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 4.8e-23 112.1 181 43.1
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 9.0e-22 107.8 176 39.8
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 1.2e-21 107.5 298 31.2
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 2.2e-20 103.2 152 39.5
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 6.0e-18 95.1 87 56.3
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 6.0e-18 95.1 137 45.3
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 7.9e-18 94.7 130 45.4
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 1.8e-14 83.6 126 43.7
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 2.4e-14 83.2 130 43.1
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 3.1e-14 82.8 132 44.7
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 4.0e-14 82.4 96 47.9
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 3.4e-13 79.3 126 42.9
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.3e-12 77.4 130 40.0
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 1.3e-12 77.4 49 67.3
CBR_g48716 Chara braunii HOM05D002388 ORTHO05D004745 4.9e-12 75.5 84 47.6
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 5.5e-11 72.0 49 61.2
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 9.3e-11 71.2 44 72.7
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 1.6e-10 70.5 44 70.5
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 1.6e-10 70.5 44 70.5
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 1.3e-09 67.4 54 53.7


User provided reference genes

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