Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G0367 Papaver somniferum HOM05D007263 ORTHO05D009187 7.7e-121 437.2 226 100.0
PSO339G3146 Papaver somniferum HOM05D007263 ORTHO05D009187 2.8e-118 428.7 226 98.2
TAR623G1137 Trochodendron aralioides HOM05D007263 ORTHO05D009187 4.6e-57 225.3 200 62.0
Nn6g32384 Nelumbo nucifera HOM05D007263 ORTHO05D009187 5.7e-55 218.4 156 71.2
MBI19_g09308_MAGBIO Magnolia biondii HOM05D007263 ORTHO05D009187 3.7e-54 215.7 215 58.6
FAN16G1710 Fragaria x ananassa HOM05D007263 ORTHO05D009187 1.2e-52 210.7 204 57.4
Dinv32124 Davidia involucrata HOM05D007263 ORTHO05D009187 2.0e-52 209.9 159 69.8
FvH4_3g27180 Fragaria vesca HOM05D007263 ORTHO05D009187 3.4e-52 209.1 204 56.9
RcHm_v2.0_Chr5g0049851 Rosa chinensis HOM05D007263 ORTHO05D009187 5.8e-52 208.4 200 58.0
Actinidia06355 Actinidia chinensis HOM05D007263 ORTHO05D009187 7.6e-52 208.0 216 56.9
GSVIVG01037444001 Vitis vinifera HOM05D000101 ORTHO05D000089 2.2e-51 206.5 197 57.9
Manes.09G111800 Manihot esculenta HOM05D007263 ORTHO05D009187 6.5e-51 204.9 160 67.5
Cfa010246 Carpinus fangiana HOM05D007263 ORTHO05D009187 1.4e-50 203.8 196 59.7
MD11G1181300 Malus domestica HOM05D007263 ORTHO05D009187 1.4e-50 203.8 159 66.0
Prupe.6G154100 Prunus persica HOM05D007263 ORTHO05D009187 3.2e-50 202.6 211 57.8
FAN11G0122 Fragaria x ananassa HOM05D007263 ORTHO05D009187 9.3e-50 201.1 210 55.2
Thecc.09G263800 Theobroma cacao HOM05D007263 ORTHO05D009187 1.2e-49 200.7 196 59.7
TWI79G1263 Tripterygium wilfordii HOM05D007263 ORTHO05D009187 1.6e-49 200.3 194 59.3
CiPaw.13G127300 Carya illinoinensis HOM05D007263 ORTHO05D009187 2.7e-49 199.5 159 67.3
Glyma.20G058100 Glycine max HOM05D007263 ORTHO05D009187 2.7e-49 199.5 199 53.8
Atru.chr3.2913 Acer truncatum HOM05D007263 ORTHO05D009187 3.0e-48 196.1 178 61.8
Eucgr.J00617 Eucalyptus grandis HOM05D007263 ORTHO05D009187 5.1e-48 195.3 236 51.3
Rhsim01G0197200 Rhododendron simsii HOM05D007263 ORTHO05D009187 5.1e-48 195.3 173 60.7
Duzib168G0238 Durio zibethinus HOM05D007263 ORTHO05D009187 8.7e-48 194.5 198 57.1
Hma1.2p1_0994F.1_g245580 Hydrangea macrophylla HOM05D007263 ORTHO05D009187 1.1e-47 194.1 201 57.2
Phvul.L004437 Phaseolus vulgaris HOM05D007263 ORTHO05D009187 1.1e-47 194.1 210 52.9
FAN25G1860 Fragaria x ananassa HOM05D007263 ORTHO05D009187 3.3e-47 192.6 215 53.5
Gohir.D05G078200 Gossypium hirsutum HOM05D007263 ORTHO05D009187 4.3e-47 192.2 162 61.7
Gorai.009G079700 Gossypium raimondii HOM05D007263 ORTHO05D009187 4.3e-47 192.2 162 61.7
VMungo0540G1942 Vigna mungo HOM05D007263 ORTHO05D009187 2.2e-46 189.9 188 54.8
Gohir.A05G075400 Gossypium hirsutum HOM05D007263 ORTHO05D009187 4.8e-46 188.7 198 53.5
Ca_16255_v3 Cicer arietinum L. HOM05D007263 ORTHO05D009187 1.4e-45 187.2 203 52.2
ATR0068G111 Amborella trichopoda HOM05D007263 ORTHO05D009187 1.8e-45 186.8 187 52.9
HanXRQChr03g0085111 Helianthus annuus HOM05D007263 ORTHO05D009187 1.8e-45 186.8 215 53.0
DCAR_028386 Daucus carota HOM05D007263 ORTHO05D009187 3.1e-45 186.0 158 63.3
ECA240G3643 Erigeron canadensis HOM05D000684 ORTHO05D000688 3.1e-45 186.0 159 62.9
Lj6g0015831 Lotus japonicus HOM05D007263 ORTHO05D009187 3.1e-45 186.0 210 52.9
CDE07G0519 Ceratophyllum demersum HOM05D007263 ORTHO05D009187 6.9e-45 184.9 189 53.4
COL.COLO4_25292 Corchorus olitorius HOM05D007263 ORTHO05D009187 9.0e-45 184.5 204 55.4
Ciclev10016536m.g Citrus clementina HOM05D007263 ORTHO05D009187 3.4e-44 182.6 196 57.1
CSS0014161 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 1.0e-43 181.0 165 57.0
Medtr3g079520 Medicago truncatula HOM05D007263 ORTHO05D009187 2.9e-43 179.5 163 58.3
Medtr3g479600 Medicago truncatula HOM05D007263 ORTHO05D009187 2.9e-43 179.5 163 58.3
Sed0004996 Sechium edule HOM05D007263 ORTHO05D009187 6.5e-43 178.3 210 52.4
Lalb_Chr14g0363361 Lupinus albus HOM05D007263 ORTHO05D009187 2.5e-42 176.4 139 65.5
ClCG02G024290 Citrullus lanatus HOM05D007263 ORTHO05D009187 3.2e-42 176.0 186 56.5
Lsat_1_v5_gn_6_85860 Lactuca sativa HOM05D007263 ORTHO05D009187 2.1e-41 173.3 181 51.9
Sabra09G0122700 Salix brachista HOM05D007263 ORTHO05D009187 2.1e-41 173.3 210 52.9
Sc06g0006180 Simmondsia chinensis HOM05D007263 ORTHO05D009187 2.7e-41 172.9 159 55.3
CANSAT54G3001 Cannabis sativa HOM05D007263 ORTHO05D009187 3.6e-41 172.6 164 54.3
PGR119G0910 Punica granatum HOM05D007263 ORTHO05D009187 3.6e-41 172.6 187 55.6
Potri.009G156700 Populus trichocarpa HOM05D007263 ORTHO05D009187 6.1e-41 171.8 132 65.9
Oeu032066.1 Olea europaea HOM05D007263 ORTHO05D009187 7.9e-41 171.4 140 62.9
vmacro23061 Vaccinium macrocarpon HOM05D007263 ORTHO05D009187 1.0e-40 171.0 127 69.3
MSTRG.17655 Avicennia marina HOM05D007263 ORTHO05D009187 1.8e-40 170.2 198 50.0
Cc01_g07450 Coffea canephora HOM05D007263 ORTHO05D009187 6.7e-40 168.3 153 58.2
SGA_v2.0_scaffold16G07576 Striga asiatica HOM05D007263 ORTHO05D009187 6.7e-40 168.3 144 60.4
SGA_v2.0_scaffold3G01630 Striga asiatica HOM05D007263 ORTHO05D009187 6.7e-40 168.3 144 60.4
AL4G10720 Arabidopsis lyrata HOM05D007263 ORTHO05D009187 2.0e-39 166.8 161 54.7
Carub.0004s0057 Capsella rubella HOM05D007263 ORTHO05D009187 5.7e-39 165.2 185 51.4
THA.LOC104816966 Tarenaya hassleriana HOM05D007263 ORTHO05D009187 7.4e-39 164.9 153 56.9
A09p58160 Brassica napus HOM05D007263 ORTHO05D009187 9.7e-39 164.5 124 66.1
BraA09t41205Z Brassica rapa HOM05D007263 ORTHO05D009187 9.7e-39 164.5 124 66.1
CSS0024406 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 9.7e-39 164.5 131 61.1
BcaC07g41154 Brassica carinata HOM05D007263 ORTHO05D009187 1.7e-38 163.7 151 55.6
BolC8t51703H Brassica oleracea HOM05D007263 ORTHO05D009187 1.7e-38 163.7 151 55.6
CARHR112460 Cardamine hirsuta HOM05D007263 ORTHO05D009187 1.7e-38 163.7 151 55.6
QL01p020523 Quercus lobata HOM05D007263 ORTHO05D009187 2.8e-38 162.9 128 64.8
AT2G21530 Arabidopsis thaliana HOM05D007263 ORTHO05D009187 3.7e-38 162.5 188 50.5
Sp4g00690 Schrenkiella parvula HOM05D007263 ORTHO05D009187 3.7e-38 162.5 154 55.8
unitig_8.g2984 Utricularia gibba HOM05D007263 ORTHO05D009187 1.8e-37 160.2 137 59.1
Thhalv10000320m.g Eutrema salsugineum HOM05D007263 ORTHO05D009187 2.4e-37 159.8 170 51.8
EL10Ac7g16235 Beta vulgaris HOM05D007263 ORTHO05D009187 3.1e-37 159.5 136 60.3
Psat5g112360 Pisum sativum HOM05D007263 ORTHO05D009187 5.3e-37 158.7 194 50.5
SalBow3G2238 Salvia bowleyana HOM05D007263 ORTHO05D009187 5.3e-37 158.7 148 58.1
Hund18825 Selenicereus undatus HOM05D007263 ORTHO05D009187 5.3e-37 158.7 170 50.6
Os11g0127800 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 1.5e-36 157.1 143 57.3
AUR62001600 Chenopodium quinoa HOM05D007263 ORTHO05D009187 3.4e-36 156.0 129 59.7
SGA_v2.0_scaffold29G12128 Striga asiatica HOM05D000563 ORTHO05D000536 3.4e-36 156.0 146 55.5
AUR62020179 Chenopodium quinoa HOM05D007263 ORTHO05D009187 5.9e-36 155.2 135 60.0
Aa31LG7G14990 Aethionema arabicum HOM05D007263 ORTHO05D009187 2.2e-35 153.3 190 47.4
Haze_23636 Corylus avellana HOM05D007263 ORTHO05D009187 2.2e-35 153.3 201 47.8
Migut.N02412 Erythranthe guttata HOM05D007263 ORTHO05D009187 2.2e-35 153.3 104 69.2
Zm00001eb163720 Zea mays HOM05D007263 ORTHO05D009187 2.2e-35 153.3 210 44.3
MELO3C014714.2 Cucumis melo HOM05D007263 ORTHO05D009187 2.9e-35 152.9 162 57.4
CAN.G651.2 Capsicum annuum HOM05D007263 ORTHO05D009187 5.0e-35 152.1 160 51.2
SMO271G0152 Selaginella moellendorffii HOM05D007263 ORTHO05D009187 9.4e-34 147.9 152 48.7
Pp3c2_15500 Physcomitrium patens HOM05D007263 ORTHO05D009187 1.0e-32 144.4 119 55.5
TPR.G9589 Trifolium pratense HOM05D007263 ORTHO05D009187 3.9e-32 142.5 103 66.0
Sopen01g004570 Solanum pennellii HOM05D007263 ORTHO05D009187 5.1e-32 142.1 188 46.8
Solyc01g009080.4 Solanum lycopersicum HOM05D007263 ORTHO05D009187 6.7e-32 141.7 177 47.5
Pp3c1_27160 Physcomitrium patens HOM05D007263 ORTHO05D009187 1.1e-31 141.0 205 44.4
PGSC0003DMG400022700 Solanum tuberosum HOM05D007263 ORTHO05D009187 2.0e-31 140.2 208 43.8
CsaV3_4G017420 Cucumis sativus L. HOM05D007263 ORTHO05D009187 4.4e-31 139.0 195 47.7
Potri.009G156900 Populus trichocarpa HOM05D007263 ORTHO05D009187 4.5e-28 129.0 114 60.5
Mapoly0061s0077 Marchantia polymorpha HOM05D007263 ORTHO05D009187 3.2e-26 122.9 130 51.5
Nitab4.5_0000428g0130 Nicotiana tabacum HOM05D007263 ORTHO05D009187 2.3e-24 116.7 181 43.1
arahy.Tifrunner.gnm1.ann1.S2FUN4 Arachis hypogaea HOM05D007263 ORTHO05D009187 3.0e-24 116.3 161 44.1
arahy.Tifrunner.gnm1.ann1.TU72Q6 Arachis hypogaea HOM05D007263 ORTHO05D009187 5.2e-24 115.5 165 43.6
Peaxi162Scf00342g00119 Petunia axillaris HOM05D007263 ORTHO05D009187 4.4e-23 112.5 91 62.6
Cpa.g.sc103.87 Carica papaya HOM05D007263 ORTHO05D009187 9.7e-23 111.3 260 35.0
SGA_v2.0_scaffold8G04511 Striga asiatica HOM05D000563 ORTHO05D000536 1.4e-21 107.5 146 47.9
Cpa.g.c47634 Carica papaya HOM05D007263 ORTHO05D009187 1.8e-21 107.1 114 53.5
Nitab4.5_0002300g0100 Nicotiana tabacum HOM05D007263 ORTHO05D009187 1.8e-21 107.1 167 44.3
SEGI_12571 Sequoiadendron giganteum HOM05D007263 ORTHO05D009187 7.0e-21 105.1 73 67.1
Os12g0124000 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 1.2e-20 104.4 181 40.3
MCO16G316 Micromonas commoda HOM05D007263 ORTHO05D009187 2.1e-17 93.6 114 43.9
PRCOL_00003243 Prasinoderma coloniale HOM05D007263 ORTHO05D009187 4.1e-13 79.3 108 40.7
Cre12.g534450 Chlamydomonas reinhardtii HOM05D007263 ORTHO05D009187 7.7e-12 75.1 110 37.3
Sabra04G0132300 Salix brachista HOM05D000052 ORTHO05D001127 2.1e-09 67.0 56 58.9
MCO15G394 Micromonas commoda HOM05D003483 ORTHO05D004101 8.8e-08 61.6 145 29.0
COL.COLO4_11419 Corchorus olitorius HOM05D002878 ORTHO05D003649 4.4e-07 59.3 133 33.8
Peaxi162Scf00450g00316 Petunia axillaris HOM05D002878 ORTHO05D003649 5.7e-07 58.9 116 32.8
AagrBONN_evm.TU.Sc2ySwM_117.94 Anthoceros agrestis HOM05D007263 ORTHO05D009187 1.7e-06 57.4 57 47.4
Nitab4.5_0002016g0120 Nicotiana tabacum HOM05D002878 ORTHO05D003649 1.7e-06 57.4 133 31.6
Sopen02g035540 Solanum pennellii HOM05D002878 ORTHO05D003649 2.2e-06 57.0 139 30.2
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 2.8e-06 56.6 79 36.7


User provided reference genes

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