Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 1.4e-62 242.7 117 100.0
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 9.4e-62 240.0 117 98.3
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 1.9e-46 189.1 118 75.4
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 1.5e-43 179.5 120 72.5
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 1.5e-43 179.5 120 72.5
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 2.0e-43 179.1 121 73.6
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 7.5e-43 177.2 118 72.9
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 2.8e-42 175.3 118 71.2
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 2.8e-42 175.3 117 71.8
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 6.3e-42 174.1 117 68.4
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 7.0e-41 170.6 115 68.7
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 2.7e-40 168.7 105 75.2
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 3.5e-40 168.3 102 78.4
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 4.5e-40 167.9 107 71.0
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 4.5e-40 167.9 118 68.6
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 1.0e-39 166.8 117 68.4
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 1.3e-39 166.4 112 67.9
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 2.3e-39 165.6 118 67.8
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 2.3e-39 165.6 116 64.7
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 3.8e-39 164.9 120 68.3
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 6.6e-39 164.1 111 70.3
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 1.1e-38 163.3 114 68.4
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 1.9e-38 162.5 114 67.5
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 1.9e-38 162.5 116 67.2
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 4.2e-38 161.4 117 65.8
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 4.2e-38 161.4 108 71.3
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 4.2e-38 161.4 107 69.2
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 9.5e-38 160.2 109 67.9
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 1.6e-37 159.5 117 65.8
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 1.6e-37 159.5 105 69.5
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 2.8e-37 158.7 108 67.6
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 2.8e-37 158.7 105 71.4
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 3.6e-37 158.3 116 64.7
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 4.7e-37 157.9 97 76.3
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 6.1e-37 157.5 104 70.2
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 6.1e-37 157.5 109 67.0
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 8.0e-37 157.1 104 70.2
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 8.0e-37 157.1 104 69.2
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 1.0e-36 156.8 102 70.6
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 1.8e-36 156.0 105 67.6
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 1.8e-36 156.0 100 74.0
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 3.0e-36 155.2 114 64.9
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 4.0e-36 154.8 105 66.7
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 4.0e-36 154.8 110 67.3
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 4.0e-36 154.8 104 68.3
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 5.2e-36 154.5 100 73.0
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 5.2e-36 154.5 100 73.0
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 6.8e-36 154.1 102 68.6
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 6.8e-36 154.1 104 68.3
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 6.8e-36 154.1 113 68.1
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 6.8e-36 154.1 107 66.4
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 8.9e-36 153.7 116 61.2
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 8.9e-36 153.7 102 68.6
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 8.9e-36 153.7 104 71.2
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 8.9e-36 153.7 111 64.9
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 1.5e-35 152.9 106 68.9
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 2.0e-35 152.5 97 71.1
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 2.0e-35 152.5 120 61.7
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.0e-35 152.5 104 71.2
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 2.6e-35 152.1 119 62.2
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 2.6e-35 152.1 118 62.7
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 2.6e-35 152.1 111 64.0
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 3.4e-35 151.8 104 67.3
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 3.4e-35 151.8 108 66.7
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 3.4e-35 151.8 111 64.9
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 4.4e-35 151.4 110 64.5
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 4.4e-35 151.4 102 67.6
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 5.7e-35 151.0 102 68.6
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 7.5e-35 150.6 95 70.5
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 9.8e-35 150.2 100 69.0
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 9.8e-35 150.2 100 69.0
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 1.7e-34 149.4 113 63.7
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 2.8e-34 148.7 117 60.7
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 3.7e-34 148.3 118 61.9
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 4.9e-34 147.9 107 66.4
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 8.3e-34 147.1 95 74.7
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 1.1e-33 146.7 117 60.7
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 1.1e-33 146.7 117 60.7
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 1.1e-33 146.7 105 63.8
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 1.1e-33 146.7 93 73.1
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 1.1e-33 146.7 110 61.8
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.1e-33 146.7 101 68.3
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 1.4e-33 146.4 117 60.7
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 1.4e-33 146.4 118 61.0
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 1.4e-33 146.4 117 60.7
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 1.8e-33 146.0 96 69.8
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 2.4e-33 145.6 117 59.8
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 2.4e-33 145.6 117 60.7
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 3.1e-33 145.2 105 64.8
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 3.1e-33 145.2 101 66.3
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 4.1e-33 144.8 106 66.0
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 4.1e-33 144.8 101 67.3
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 4.1e-33 144.8 112 59.8
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 5.4e-33 144.4 115 60.0
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 5.4e-33 144.4 101 66.3
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 5.4e-33 144.4 101 65.3
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 7.0e-33 144.1 117 59.8
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 7.0e-33 144.1 113 61.1
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 7.0e-33 144.1 101 66.3
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 9.2e-33 143.7 107 64.5
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 9.2e-33 143.7 101 66.3
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 9.2e-33 143.7 101 66.3
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 1.2e-32 143.3 96 70.8
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 1.2e-32 143.3 96 68.8
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 1.6e-32 142.9 91 73.6
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.6e-32 142.9 101 65.3
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.6e-32 142.9 101 65.3
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 1.6e-32 142.9 91 73.6
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 2.0e-32 142.5 109 63.3
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 2.0e-32 142.5 107 63.6
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 2.0e-32 142.5 117 59.0
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 2.0e-32 142.5 117 58.1
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 3.5e-32 141.7 107 63.6
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 3.5e-32 141.7 117 58.1
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 5.9e-32 141.0 107 65.4
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 5.9e-32 141.0 110 60.9
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 7.8e-32 140.6 78 79.5
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 7.8e-32 140.6 116 57.8
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 1.0e-31 140.2 103 65.0
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 1.0e-31 140.2 107 65.4
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 1.0e-31 140.2 107 65.4
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 1.0e-31 140.2 103 65.0
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 1.0e-31 140.2 104 60.6
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 2.3e-31 139.0 90 73.3
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 2.3e-31 139.0 105 61.0
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 5.0e-31 137.9 94 70.2
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 5.0e-31 137.9 119 58.0
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 5.0e-31 137.9 119 58.0
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 5.0e-31 137.9 102 60.8
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 8.6e-31 137.1 101 63.4
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 1.5e-30 136.3 117 58.1
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 4.3e-30 134.8 119 57.1
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 5.6e-30 134.4 117 57.3
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 5.6e-30 134.4 117 57.3
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 5.6e-30 134.4 117 57.3
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 5.6e-30 134.4 117 57.3
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 6.1e-29 131.0 96 62.5
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 6.1e-29 131.0 71 78.9
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 1.0e-28 130.2 110 60.9
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 2.6e-27 125.6 82 68.3
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 3.4e-27 125.2 117 52.1
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 9.8e-27 123.6 120 53.3
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 1.7e-26 122.9 98 59.2
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 9.2e-25 117.1 101 55.4
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 7.3e-22 107.5 100 53.0
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 8.0e-21 104.0 86 61.6
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 4.4e-19 98.2 58 74.1
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 4.4e-19 98.2 68 67.6
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 2.2e-18 95.9 81 63.0
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 2.9e-18 95.5 62 69.4
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 1.1e-14 83.6 52 71.2
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 3.3e-14 82.0 73 47.9
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 2.6e-11 72.4 60 55.0
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 1.3e-10 70.1 69 50.7
TAR623G0451 Trochodendron aralioides HOM05D004651 ORTHO05D005761 5.4e-09 64.7 57 57.9
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 1.7e-07 59.7 51 52.9
Aa31LG3G1100 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.1e-06 57.0 116 33.6


User provided reference genes

Program Settings