Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 5.0e-105 384.4 191 100.0
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 1.1e-104 383.3 191 99.5
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 7.5e-101 370.5 191 95.3
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 1.3e-100 369.8 191 95.3
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 1.7e-100 369.4 191 95.3
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 1.7e-100 369.4 191 93.7
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 6.4e-100 367.5 191 94.2
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 8.3e-100 367.1 191 94.8
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 1.4e-99 366.3 191 94.2
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.4e-99 366.3 189 95.2
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 1.4e-99 366.3 191 92.7
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 1.4e-99 366.3 191 93.2
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 1.4e-99 366.3 190 95.8
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 1.4e-99 366.3 191 93.7
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 1.9e-99 365.9 191 93.7
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 2.4e-99 365.5 191 93.2
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 3.2e-99 365.2 191 93.2
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 4.1e-99 364.8 191 93.7
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 5.4e-99 364.4 190 93.2
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 5.4e-99 364.4 191 92.7
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 9.2e-99 363.6 191 93.2
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 1.2e-98 363.2 191 92.7
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 1.2e-98 363.2 191 91.6
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 1.2e-98 363.2 190 92.6
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 1.2e-98 363.2 190 92.6
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 1.6e-98 362.8 191 92.7
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 1.6e-98 362.8 191 92.7
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 1.6e-98 362.8 191 92.1
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 2.0e-98 362.5 191 92.1
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 2.0e-98 362.5 191 92.1
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 2.7e-98 362.1 191 91.6
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 2.7e-98 362.1 191 92.1
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 3.5e-98 361.7 191 92.1
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 3.5e-98 361.7 191 92.1
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 4.6e-98 361.3 189 92.6
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 6.0e-98 360.9 191 92.7
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 6.0e-98 360.9 189 93.1
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 6.0e-98 360.9 189 93.1
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 6.0e-98 360.9 189 93.1
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 7.8e-98 360.5 195 93.3
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 7.8e-98 360.5 191 91.6
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 7.8e-98 360.5 189 92.6
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 1.0e-97 360.1 191 92.1
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 1.0e-97 360.1 191 92.7
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 1.0e-97 360.1 191 91.1
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 1.7e-97 359.4 188 91.5
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 1.7e-97 359.4 189 92.6
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 3.0e-97 358.6 191 91.1
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 3.0e-97 358.6 189 92.6
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 3.0e-97 358.6 191 91.1
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 3.0e-97 358.6 191 91.1
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 3.9e-97 358.2 189 91.5
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 3.9e-97 358.2 191 91.1
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 3.9e-97 358.2 191 91.1
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 3.9e-97 358.2 191 91.1
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 5.0e-97 357.8 189 91.5
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 5.0e-97 357.8 188 92.6
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 5.0e-97 357.8 191 91.6
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 6.6e-97 357.5 191 91.1
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 6.6e-97 357.5 191 91.1
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 6.6e-97 357.5 191 90.6
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 8.6e-97 357.1 191 91.1
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 8.6e-97 357.1 195 90.3
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 1.5e-96 356.3 191 91.1
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 3.3e-96 355.1 188 91.5
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 3.3e-96 355.1 191 89.5
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 4.3e-96 354.8 188 91.0
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 2.1e-95 352.4 201 87.1
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 2.1e-95 352.4 188 92.6
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 6.2e-95 350.9 201 88.1
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 6.2e-95 350.9 216 82.4
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 6.2e-95 350.9 191 87.4
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 8.1e-95 350.5 191 86.9
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 8.1e-95 350.5 191 87.4
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 8.1e-95 350.5 191 86.9
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 1.1e-94 350.1 198 87.9
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 2.3e-94 349.0 210 83.3
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 3.1e-94 348.6 191 86.4
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 2.0e-93 345.9 185 89.7
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 2.6e-93 345.5 191 85.9
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 3.4e-93 345.1 183 90.2
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 9.8e-93 343.6 189 85.7
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 2.2e-92 342.4 191 85.3
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 2.9e-92 342.0 189 88.4
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 3.7e-92 341.7 214 80.4
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 4.9e-92 341.3 191 84.3
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 1.4e-91 339.7 232 75.9
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 1.4e-91 339.7 191 83.2
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 1.9e-91 339.3 191 83.8
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 1.9e-91 339.3 188 84.6
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 2.4e-91 339.0 188 84.6
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 5.4e-91 337.8 188 84.0
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 7.1e-91 337.4 188 84.0
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 9.2e-91 337.0 188 83.5
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.2e-90 336.7 191 82.7
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 3.5e-90 335.1 189 83.1
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 6.0e-90 334.3 188 84.0
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 7.8e-90 334.0 191 82.2
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 1.3e-89 333.2 189 82.0
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 3.6e-87 325.1 191 79.6
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 4.7e-87 324.7 173 91.3
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 1.4e-86 323.2 181 89.0
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 1.4e-86 323.2 181 89.0
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.3e-84 316.6 188 78.2
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 2.2e-84 315.8 173 87.3
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 2.9e-84 315.5 191 79.1
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 2.9e-84 315.5 188 77.7
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.0e-81 307.0 160 93.8
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 3.0e-81 305.4 167 89.2
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 3.6e-79 298.5 160 89.4
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 1.3e-76 290.0 160 88.1
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 2.4e-75 285.8 161 87.0
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 1.0e-73 280.4 171 82.5
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 2.4e-70 269.2 209 67.5
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 5.8e-69 264.6 187 69.5
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.5e-61 240.0 190 64.2
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 2.6e-61 239.2 140 85.0
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.9e-59 233.0 183 61.2
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.9e-56 223.0 206 52.9
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 2.5e-56 222.6 149 76.5
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 8.1e-55 217.6 113 90.3
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 2.0e-53 213.0 129 82.9
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 2.5e-51 206.1 112 88.4
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 2.7e-50 202.6 109 92.7
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 3.5e-50 202.2 109 91.7
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 1.0e-49 200.7 109 90.8
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 2.3e-49 199.5 105 85.7
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 3.9e-49 198.7 158 64.6
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 1.4e-38 163.7 82 92.7
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 3.1e-38 162.5 82 91.5
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 4.1e-38 162.2 82 91.5
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 5.9e-37 158.3 80 91.2
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 5.9e-37 158.3 81 90.1
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 2.5e-35 152.9 84 89.3
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 1.4e-33 147.1 74 91.9
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.8e-33 146.7 157 46.5
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 3.3e-32 142.5 81 87.7
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 2.8e-31 139.4 71 88.7
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 8.2e-31 137.9 71 90.1
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 4.2e-27 125.6 84 79.8
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 1.6e-26 123.6 68 82.4
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 7.9e-26 121.3 68 80.9
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 7.9e-26 121.3 68 80.9
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 2.1e-18 96.7 51 84.3
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 8.8e-17 91.3 47 85.1
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 8.5e-12 74.7 38 86.8
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 8.5e-12 74.7 38 86.8
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 8.5e-12 74.7 38 86.8
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 8.5e-12 74.7 38 86.8
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 1.1e-11 74.3 37 89.2


User provided reference genes

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