Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 4.9e-111 404.4 201 100.0
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 3.9e-108 394.8 201 98.0
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 3.9e-100 368.2 201 90.5
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 1.8e-81 306.2 195 74.4
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 5.3e-81 304.7 198 74.7
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 1.0e-79 300.4 200 72.5
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 1.7e-79 299.7 200 71.5
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 2.9e-79 298.9 198 73.2
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 3.8e-79 298.5 200 70.5
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 8.5e-79 297.4 198 74.7
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 2.5e-78 295.8 200 72.0
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 7.2e-78 294.3 200 73.5
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 7.2e-78 294.3 200 72.5
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 9.4e-78 293.9 200 72.0
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 1.2e-77 293.5 200 72.0
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 1.6e-77 293.1 201 72.1
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 2.1e-77 292.7 198 72.2
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 2.7e-77 292.4 200 70.5
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 2.7e-77 292.4 200 71.0
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 4.7e-77 291.6 200 72.5
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 4.7e-77 291.6 200 71.5
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 6.1e-77 291.2 198 73.2
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 8.0e-77 290.8 200 72.0
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 1.4e-76 290.0 198 71.2
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 1.8e-76 289.7 200 72.0
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 1.8e-76 289.7 200 70.5
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 2.3e-76 289.3 199 70.4
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 4.0e-76 288.5 199 70.4
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 5.2e-76 288.1 198 71.2
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 6.7e-76 287.7 200 71.0
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 8.8e-76 287.3 198 72.2
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 8.8e-76 287.3 200 71.5
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.2e-75 287.0 200 70.5
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 1.2e-75 287.0 200 72.0
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 1.2e-75 287.0 199 69.8
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 1.5e-75 286.6 200 70.0
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 5.7e-75 284.6 200 70.0
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 5.7e-75 284.6 198 69.7
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 7.5e-75 284.3 193 73.1
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 7.5e-75 284.3 198 69.2
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 1.7e-74 283.1 198 70.2
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 2.2e-74 282.7 200 71.0
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 6.3e-74 281.2 201 69.2
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 6.3e-74 281.2 193 72.5
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 6.3e-74 281.2 200 70.0
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 8.2e-74 280.8 193 72.5
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 8.2e-74 280.8 193 72.5
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 1.4e-73 280.0 198 69.2
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 1.8e-73 279.6 198 69.7
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 1.8e-73 279.6 198 68.7
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 3.1e-73 278.9 198 68.2
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 4.1e-73 278.5 193 70.5
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 9.1e-73 277.3 198 68.2
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 1.2e-72 276.9 200 67.5
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 1.6e-72 276.6 198 67.2
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 2.0e-72 276.2 193 70.5
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 3.5e-72 275.4 200 67.5
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 3.5e-72 275.4 200 68.0
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 5.9e-72 274.6 198 69.2
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 1.0e-71 273.9 200 67.0
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 1.0e-71 273.9 204 68.1
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 1.0e-71 273.9 195 69.2
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 1.7e-71 273.1 200 67.0
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.2e-71 272.7 193 71.5
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 3.8e-71 271.9 193 69.4
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 5.0e-71 271.6 210 65.2
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 6.5e-71 271.2 193 69.9
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 8.5e-71 270.8 198 68.2
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 1.9e-70 269.6 198 66.2
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 2.5e-70 269.2 198 66.2
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 4.2e-70 268.5 200 68.0
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 4.2e-70 268.5 194 71.1
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 1.6e-69 266.5 195 67.7
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 2.1e-69 266.2 195 66.7
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 2.1e-69 266.2 195 66.7
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 2.1e-69 266.2 196 68.4
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 2.7e-69 265.8 200 66.5
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 2.7e-69 265.8 195 66.2
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 4.7e-69 265.0 195 65.6
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 4.7e-69 265.0 193 67.4
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 8.0e-69 264.2 200 65.5
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 8.0e-69 264.2 200 65.5
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 1.4e-68 263.5 200 64.5
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 1.4e-68 263.5 200 64.5
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 1.4e-68 263.5 194 69.1
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 2.3e-68 262.7 200 64.5
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 2.3e-68 262.7 200 65.5
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 2.3e-68 262.7 198 65.2
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 3.0e-68 262.3 195 66.2
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 6.8e-68 261.2 195 66.7
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 6.8e-68 261.2 200 66.5
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 8.8e-68 260.8 200 64.0
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 1.2e-67 260.4 192 66.7
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 1.5e-67 260.0 198 62.1
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 4.8e-66 255.0 182 68.7
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 1.4e-65 253.4 198 62.6
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 1.8e-65 253.1 203 61.6
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 3.1e-65 252.3 195 64.6
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 3.1e-65 252.3 182 69.2
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 7.0e-65 251.1 201 58.7
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 2.0e-64 249.6 198 60.6
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 4.5e-64 248.4 175 68.0
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 7.7e-64 247.7 175 70.9
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 8.6e-63 244.2 198 63.1
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 8.6e-63 244.2 201 62.7
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 8.6e-63 244.2 200 62.5
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 3.3e-62 242.3 200 60.5
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 5.5e-62 241.5 184 66.8
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 9.5e-62 240.7 200 60.0
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 1.2e-61 240.4 198 61.6
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 1.6e-61 240.0 181 65.7
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 3.6e-61 238.8 198 61.1
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 3.6e-61 238.8 328 43.9
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 4.0e-60 235.3 177 67.8
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 6.8e-60 234.6 186 60.2
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 5.7e-59 231.5 167 70.1
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 2.9e-55 219.2 219 54.3
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 6.6e-55 218.0 220 53.6
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 6.6e-55 218.0 239 53.1
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 2.8e-53 212.6 250 48.4
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 3.1e-52 209.1 190 52.1
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 6.8e-52 208.0 233 52.4
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 2.6e-51 206.1 167 61.7
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 2.2e-50 203.0 193 50.8
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 2.3e-44 183.0 128 72.7
SMO147G0050 Selaginella moellendorffii HOM05D004366 ORTHO05D005058 4.9e-42 175.3 195 46.7
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 8.3e-42 174.5 223 46.2
CBR_g17957 Chara braunii HOM05D004366 ORTHO05D005058 2.4e-41 172.9 197 46.2
TAR629G2773 Trochodendron aralioides HOM05D004366 ORTHO05D005058 4.1e-41 172.2 112 73.2
Dinv16634 Davidia involucrata HOM05D004366 ORTHO05D005058 2.7e-40 169.5 112 72.3
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 1.3e-39 167.2 201 45.3
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 1.9e-38 163.3 115 70.4
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 5.6e-38 161.8 117 65.8
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 7.3e-38 161.4 173 50.3
MD11G1061500 Malus domestica HOM05D004366 ORTHO05D005058 1.7e-31 140.2 113 60.2
Mapoly0113s0045 Marchantia polymorpha HOM05D004366 ORTHO05D005058 2.3e-31 139.8 209 40.7
Potri.019G023800 Populus trichocarpa HOM05D004366 ORTHO05D005058 1.6e-29 133.7 89 67.4
MSTRG.695 Avicennia marina HOM05D004366 ORTHO05D005058 1.5e-27 127.1 85 69.4
arahy.Tifrunner.gnm1.ann1.MY0RSE Arachis hypogaea HOM05D004366 ORTHO05D005058 5.8e-27 125.2 103 61.2
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 1.3e-26 124.0 87 66.7
arahy.Tifrunner.gnm1.ann1.J913Y5 Arachis hypogaea HOM05D004366 ORTHO05D005058 2.2e-26 123.2 84 67.9
MCO13G325 Micromonas commoda HOM05D004366 ORTHO05D005058 3.8e-26 122.5 194 40.2
CSS0042124 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 2.7e-24 116.3 81 69.1
CSS0000370 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.0e-23 114.4 81 67.9
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.5e-22 110.5 124 49.2
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 1.4e-20 104.0 130 46.2
FAN07G2952 Fragaria x ananassa HOM05D004366 ORTHO05D005058 3.4e-19 99.4 72 65.3
Rhsim11G0057700 Rhododendron simsii HOM05D004366 ORTHO05D005058 5.8e-19 98.6 70 68.6
arahy.Tifrunner.gnm1.ann1.8CQ436 Arachis hypogaea HOM05D004366 ORTHO05D005058 9.9e-19 97.8 68 69.1
arahy.Tifrunner.gnm1.ann1.N9R1JE Arachis hypogaea HOM05D004366 ORTHO05D005058 1.7e-18 97.1 68 69.1
PGSC0003DMG400015729 Solanum tuberosum HOM05D004366 ORTHO05D005058 1.4e-17 94.0 98 51.0
PSO339G3282 Papaver somniferum HOM05D000073 ORTHO05D000033 7.1e-17 91.7 53 86.8
PRCOL_00002884 Prasinoderma coloniale HOM05D004366 ORTHO05D005058 3.5e-16 89.4 200 32.5
BcaC07g37109 Brassica carinata HOM05D004366 ORTHO05D005058 1.1e-14 84.3 74 56.8
Cre05.g244850 Chlamydomonas reinhardtii HOM05D004366 ORTHO05D005058 1.5e-14 84.0 192 30.2
C08p04780 Brassica napus HOM05D004366 ORTHO05D005058 3.3e-14 82.8 70 58.6
arahy.Tifrunner.gnm1.ann1.NKT7G2 Arachis hypogaea HOM05D004366 ORTHO05D005058 9.6e-14 81.3 110 40.9
BolC8t47277H Brassica oleracea HOM05D004366 ORTHO05D005058 6.2e-13 78.6 75 56.0
Lsat_1_v5_gn_1_103541 Lactuca sativa HOM05D004366 ORTHO05D005058 1.1e-12 77.8 106 41.5
CANSAT54G0841 Cannabis sativa HOM05D001400 ORTHO05D001795 1.1e-09 67.8 49 61.2
SalBow1G5797 Salvia bowleyana HOM05D004366 ORTHO05D005058 1.1e-09 67.8 45 66.7
AUR62028525 Chenopodium quinoa HOM05D004366 ORTHO05D000022 1.8e-07 60.5 45 62.2


User provided reference genes

Program Settings