Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 0.0e+00 1076.6 569 100.0
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 1.4e-187 660.2 577 62.2
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 4.0e-182 642.1 571 61.1
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 1.3e-180 637.1 577 59.6
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 6.4e-180 634.8 579 59.2
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 7.0e-179 631.3 572 59.8
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 5.6e-176 621.7 571 59.5
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 2.1e-175 619.8 576 57.6
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 7.5e-173 611.3 576 58.5
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 7.5e-173 611.3 568 59.3
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 2.9e-172 609.4 572 57.9
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 3.7e-172 609.0 570 58.8
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 4.9e-172 608.6 572 57.7
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 4.9e-172 608.6 572 57.7
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 9.2e-171 604.4 574 57.0
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 2.1e-170 603.2 571 57.6
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 9.5e-168 594.3 570 56.5
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 6.2e-167 591.7 572 56.3
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 1.4e-166 590.5 498 62.2
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 1.8e-166 590.1 523 59.7
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 2.4e-166 589.7 589 58.2
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 3.1e-166 589.3 570 56.7
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 6.8e-166 588.2 575 56.5
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 1.5e-165 587.0 571 56.2
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 4.4e-165 585.5 570 56.3
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 5.8e-165 585.1 577 55.3
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 9.9e-165 584.3 571 56.7
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 3.8e-164 582.4 514 59.7
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 3.8e-164 582.4 577 55.1
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 3.8e-164 582.4 587 57.9
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 6.4e-164 581.6 523 59.3
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 1.9e-163 580.1 571 55.3
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 1.9e-163 580.1 573 55.1
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 4.1e-163 578.9 570 56.5
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 5.4e-163 578.6 571 57.1
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 7.1e-163 578.2 569 55.5
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 1.2e-162 577.4 569 56.2
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 1.2e-162 577.4 522 59.0
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 3.5e-162 575.9 498 59.2
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 3.5e-162 575.9 571 54.5
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 7.8e-162 574.7 505 60.0
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 1.0e-161 574.3 500 61.0
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 1.3e-161 573.9 587 56.7
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 1.7e-161 573.5 570 54.9
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 3.0e-161 572.8 512 59.6
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 8.7e-161 571.2 525 57.7
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 1.9e-160 570.1 529 57.1
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 1.9e-160 570.1 572 54.5
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 2.5e-160 569.7 503 59.0
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 2.5e-160 569.7 502 60.4
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 4.3e-160 568.9 509 59.9
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 5.6e-160 568.5 510 58.6
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 7.3e-160 568.2 529 56.5
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 9.6e-160 567.8 571 55.2
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 1.2e-159 567.4 511 57.7
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 2.1e-159 566.6 568 56.3
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 8.1e-159 564.7 557 54.6
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 1.8e-158 563.5 578 54.2
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 4.4e-157 558.9 572 53.7
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 4.9e-156 555.4 562 54.4
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 8.4e-156 554.7 574 54.2
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 3.2e-155 552.7 568 53.5
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 3.2e-155 552.7 504 58.3
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 3.9e-153 545.8 521 56.0
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 1.1e-152 544.3 500 56.4
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 1.3e-151 540.8 501 59.5
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.8e-151 539.7 587 54.9
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 3.6e-151 539.3 568 51.2
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 8.1e-151 538.1 560 52.3
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 1.1e-150 537.7 574 50.7
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.0e-150 535.8 587 54.5
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.0e-150 535.8 587 54.3
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 1.2e-149 534.3 568 52.5
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.6e-149 533.1 587 54.0
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.4e-149 532.7 587 54.3
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 4.5e-149 532.3 568 52.3
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 4.5e-149 532.3 568 52.5
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 5.8e-149 531.9 509 55.0
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 7.6e-149 531.6 548 52.4
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 1.7e-148 530.4 502 55.8
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 2.2e-148 530.0 509 55.0
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 4.9e-148 528.9 555 53.0
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 6.4e-148 528.5 507 54.2
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 8.4e-148 528.1 544 54.8
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 5.4e-147 525.4 557 52.2
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 9.3e-147 524.6 528 51.7
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 9.3e-147 524.6 507 54.2
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.1e-146 523.5 588 54.1
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 6.0e-146 521.9 507 54.0
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 7.9e-146 521.5 507 53.8
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 7.9e-146 521.5 522 53.4
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 6.7e-145 518.5 517 54.9
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 5.6e-144 515.4 506 54.9
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 2.1e-143 513.5 530 53.0
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 2.0e-141 506.9 509 52.7
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 2.6e-141 506.5 502 54.4
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 2.6e-141 506.5 569 50.8
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 4.3e-136 489.2 500 53.0
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 3.4e-133 479.6 494 51.4
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 8.4e-132 474.9 494 50.4
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 5.5e-123 445.7 383 61.6
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 1.8e-121 440.7 492 48.6
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 2.8e-119 433.3 498 48.4
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 9.4e-115 418.3 401 54.6
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 7.9e-114 415.2 393 56.0
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 7.9e-114 415.2 451 51.9
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 4.8e-111 406.0 570 41.2
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 2.2e-103 380.6 356 55.6
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 3.6e-98 363.2 321 60.7
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 6.1e-98 362.5 350 56.3
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 1.7e-95 354.4 408 49.5
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 1.2e-93 348.2 492 43.7
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 1.7e-92 344.4 566 40.5
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 1.2e-90 338.2 309 58.9
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 8.0e-90 335.5 498 39.6
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 1.2e-88 331.6 489 39.9
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 3.5e-85 320.1 519 38.9
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 2.7e-77 293.9 486 36.4
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 3.8e-76 290.0 407 42.5
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 1.9e-75 287.7 493 38.9
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 5.6e-75 286.2 493 38.9
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 1.2e-69 268.5 343 46.6
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 1.3e-60 238.4 294 46.6
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 1.6e-53 214.9 267 47.9
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 3.3e-51 207.2 205 55.6
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 2.8e-50 204.1 201 56.2
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 2.1e-45 188.0 168 55.4
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 5.4e-38 163.3 110 72.7
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 7.8e-37 159.5 170 54.1
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 7.3e-35 152.9 120 65.0
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 6.2e-34 149.8 581 25.0
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.9e-31 140.2 105 63.8
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 6.4e-31 139.8 132 57.6
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 5.4e-30 136.7 190 43.7
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 1.5e-27 128.6 397 28.0
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 5.6e-27 126.7 507 28.0
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.6e-26 125.2 104 57.7
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 3.7e-26 124.0 97 60.8
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 1.1e-25 122.5 90 68.9
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 1.4e-25 122.1 114 55.3
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 3.1e-25 120.9 489 25.4
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 1.2e-21 109.0 81 63.0
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 5.1e-20 103.6 87 60.9
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 6.3e-10 70.1 122 37.7
MBI04_g47116_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 1.4e-09 68.9 162 38.3
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 5.3e-09 67.0 60 56.7
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 5.0e-07 60.5 81 37.0
SGA_v2.0_scaffold2881G54235 Striga asiatica HOM05D001925 ORTHO05D005701 2.5e-06 58.2 45 62.2


User provided reference genes

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