Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G0045 Papaver somniferum HOM05D003665 ORTHO05D004387 0.0e+00 1253.4 747 100.0
PSO339G3164 Papaver somniferum HOM05D003665 ORTHO05D004387 0.0e+00 1152.5 747 88.4
TAR623G1097 Trochodendron aralioides HOM05D003665 ORTHO05D004387 5.7e-245 851.3 514 83.7
CSS0007464 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 1.1e-243 847.0 559 78.2
MBI05_g08786_MAGBIO Magnolia biondii HOM05D003665 ORTHO05D004387 1.1e-243 847.0 526 82.1
vmacro03198 Vaccinium macrocarpon HOM05D003665 ORTHO05D004387 3.1e-243 845.5 516 82.0
Nn2g12882 Nelumbo nucifera HOM05D003665 ORTHO05D004387 5.0e-241 838.2 540 79.1
CSS0036787 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 8.5e-241 837.4 510 81.8
Duzib170G0108 Durio zibethinus HOM05D003665 ORTHO05D004387 1.2e-239 833.6 512 81.1
GSVIVG01025191001 Vitis vinifera HOM05D003665 ORTHO05D004387 1.8e-238 829.7 578 74.4
Gorai.009G107400 Gossypium raimondii HOM05D003665 ORTHO05D004387 6.7e-238 827.8 511 80.4
Gohir.D05G103100 Gossypium hirsutum HOM05D003665 ORTHO05D004387 2.0e-237 826.2 511 80.4
MD11G1136600 Malus domestica HOM05D003665 ORTHO05D004387 1.7e-236 823.2 562 74.9
Hma1.2p1_0058F.1_g032480 Hydrangea macrophylla HOM05D003665 ORTHO05D004387 3.7e-236 822.0 468 85.9
TWI31G1339 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 3.7e-236 822.0 518 78.8
RcHm_v2.0_Chr5g0058821 Rosa chinensis HOM05D003665 ORTHO05D004387 4.8e-236 821.6 509 80.4
Atru.chr3.3622 Acer truncatum HOM05D003665 ORTHO05D004387 6.3e-236 821.2 514 79.4
Gohir.A03G033500 Gossypium hirsutum HOM05D003665 ORTHO05D004387 4.1e-235 818.5 517 79.3
CiPaw.13G113600 Carya illinoinensis HOM05D003665 ORTHO05D004387 7.0e-235 817.8 524 79.8
FAN25G3303 Fragaria x ananassa HOM05D003665 ORTHO05D004387 2.0e-234 816.2 516 79.3
Thecc.09G341400 Theobroma cacao HOM05D003665 ORTHO05D004387 2.0e-234 816.2 476 84.2
MELO3C004874.2 Cucumis melo HOM05D003665 ORTHO05D004387 3.5e-234 815.5 511 78.3
Duzib168G1080 Durio zibethinus HOM05D003665 ORTHO05D004387 5.9e-234 814.7 488 82.8
Gorai.003G141900 Gossypium raimondii HOM05D003665 ORTHO05D004387 5.9e-234 814.7 517 78.7
FvH4_3g32210 Fragaria vesca HOM05D003665 ORTHO05D004387 1.7e-233 813.1 516 79.3
Manes.11G145800 Manihot esculenta HOM05D003665 ORTHO05D004387 2.2e-233 812.8 485 83.5
Ciclev10028088m.g Citrus clementina HOM05D003665 ORTHO05D004387 3.8e-233 812.0 512 79.9
Eucgr.B02502 Eucalyptus grandis HOM05D003665 ORTHO05D004387 5.0e-233 811.6 508 79.9
Gohir.A05G103400 Gossypium hirsutum HOM05D003665 ORTHO05D004387 6.5e-233 811.2 511 79.6
CsaV3_1G014040 Cucumis sativus L. HOM05D003665 ORTHO05D004387 8.5e-233 810.8 508 78.5
Gohir.D03G134800 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.1e-232 810.4 517 78.7
MSTRG.18661 Avicennia marina HOM05D003665 ORTHO05D004387 1.5e-232 810.1 518 78.2
ClCG01G013730 Citrullus lanatus HOM05D003665 ORTHO05D004387 1.5e-232 810.1 513 78.4
Potri.009G014400 Populus trichocarpa HOM05D003665 ORTHO05D004387 1.5e-232 810.1 560 73.6
Prupe.6G102100 Prunus persica HOM05D003665 ORTHO05D004387 1.5e-232 810.1 467 84.8
MD03G1118200 Malus domestica HOM05D003665 ORTHO05D004387 3.2e-232 808.9 471 84.5
Phvul.005G134800 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 3.2e-232 808.9 509 78.6
Cfa011312 Carpinus fangiana HOM05D003665 ORTHO05D004387 4.2e-232 808.5 524 79.6
FAN11G0686 Fragaria x ananassa HOM05D003665 ORTHO05D004387 1.2e-231 807.0 528 77.5
Sed0022671 Sechium edule HOM05D003665 ORTHO05D004387 2.1e-231 806.2 519 78.0
FAN21G1776 Fragaria x ananassa HOM05D003665 ORTHO05D004387 2.7e-231 805.8 517 79.3
Lj3g0004290 Lotus japonicus HOM05D003665 ORTHO05D004387 8.0e-231 804.3 518 77.8
Potri.004G211200 Populus trichocarpa HOM05D003665 ORTHO05D004387 8.0e-231 804.3 481 82.3
FAN16G1206 Fragaria x ananassa HOM05D003665 ORTHO05D004387 1.0e-230 803.9 516 78.5
TAR369G0153 Trochodendron aralioides HOM05D003665 ORTHO05D004387 1.8e-230 803.1 478 83.9
SalBow3G4611 Salvia bowleyana HOM05D003665 ORTHO05D004387 5.2e-230 801.6 519 77.8
Cc00_g12880 Coffea canephora HOM05D003665 ORTHO05D004387 6.7e-230 801.2 521 77.4
SGA_v2.0_scaffold97G29239 Striga asiatica HOM05D003665 ORTHO05D004387 8.8e-230 800.8 509 77.8
Glyma.13G325700 Glycine max HOM05D003665 ORTHO05D004387 2.6e-229 799.3 510 78.8
Phvul.011G079600 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 3.3e-229 798.9 517 76.6
Sopen03g034790 Solanum pennellii HOM05D003665 ORTHO05D004387 7.5e-229 797.7 518 76.8
Migut.D02227 Erythranthe guttata HOM05D003665 ORTHO05D004387 9.7e-229 797.3 516 76.4
CANSAT54G1114 Cannabis sativa HOM05D003665 ORTHO05D004387 2.2e-228 796.2 521 77.4
PGR119G2069 Punica granatum HOM05D003665 ORTHO05D004387 2.2e-228 796.2 511 79.1
Solyc03g115810.3 Solanum lycopersicum HOM05D003665 ORTHO05D004387 8.2e-228 794.3 518 76.6
CiPaw.14G080900 Carya illinoinensis HOM05D003665 ORTHO05D004387 1.1e-227 793.9 519 78.8
Ca_19262_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 2.4e-227 792.7 485 80.0
Glyma.12G172200 Glycine max HOM05D003665 ORTHO05D004387 4.1e-227 792.0 508 78.3
VMungo1080G0406 Vigna mungo HOM05D003665 ORTHO05D004387 1.6e-226 790.0 509 77.0
QL01p022122 Quercus lobata HOM05D003665 ORTHO05D004387 2.7e-226 789.3 447 86.8
EL10Ac2g02422 Beta vulgaris HOM05D003665 ORTHO05D004387 3.5e-226 788.9 552 73.0
Medtr4g059000 Medicago truncatula HOM05D003665 ORTHO05D004387 7.7e-226 787.7 517 75.2
SGA_v2.0_scaffold61G21127 Striga asiatica HOM05D003665 ORTHO05D004387 2.2e-225 786.2 509 77.0
VMungo1127G1530 Vigna mungo HOM05D003665 ORTHO05D004387 3.8e-225 785.4 517 75.2
Psat5g278960 Pisum sativum HOM05D003665 ORTHO05D004387 1.5e-224 783.5 509 76.8
Haze_23819 Corylus avellana HOM05D003665 ORTHO05D004387 7.2e-224 781.2 560 74.1
ECA248G0778 Erigeron canadensis HOM05D003665 ORTHO05D004387 8.0e-223 777.7 525 74.3
Gohir.A08G198200 Gossypium hirsutum HOM05D003665 ORTHO05D004387 6.8e-222 774.6 509 76.4
Sabra09G0007600 Salix brachista HOM05D003665 ORTHO05D004387 6.8e-222 774.6 593 69.1
HanXRQChr01g0019371 Helianthus annuus HOM05D003665 ORTHO05D004387 1.5e-221 773.5 519 74.6
Medtr2g094470 Medicago truncatula HOM05D003665 ORTHO05D004387 3.4e-221 772.3 510 74.1
TPR.G11547 Trifolium pratense HOM05D003665 ORTHO05D004387 4.4e-221 771.9 510 75.1
Lalb_Chr22g0350251 Lupinus albus HOM05D003665 ORTHO05D004387 2.8e-220 769.2 515 75.7
Lj3g0015527 Lotus japonicus HOM05D003665 ORTHO05D004387 8.3e-220 767.7 444 83.3
Nitab4.5_0001997g0130 Nicotiana tabacum HOM05D003665 ORTHO05D004387 8.3e-220 767.7 493 77.5
Peaxi162Scf00274g00347 Petunia axillaris HOM05D003665 ORTHO05D004387 1.1e-219 767.3 517 75.8
Gorai.004G229200 Gossypium raimondii HOM05D003665 ORTHO05D004387 2.4e-219 766.1 507 75.9
Lalb_Chr24g0394651 Lupinus albus HOM05D003665 ORTHO05D004387 5.4e-219 765.0 449 82.2
Lalb_Chr19g0137231 Lupinus albus HOM05D003665 ORTHO05D004387 9.1e-219 764.2 460 80.0
Actinidia24103 Actinidia chinensis HOM05D003665 ORTHO05D004387 1.6e-218 763.5 461 83.1
Cpa.g.sc216.2 Carica papaya HOM05D003665 ORTHO05D004387 3.5e-218 762.3 470 80.9
Dinv32740 Davidia involucrata HOM05D003665 ORTHO05D004387 4.5e-218 761.9 455 83.1
TWI79G0002 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 1.5e-216 756.9 435 83.9
Aqoxy4G03025 Aquilegia oxysepala HOM05D003665 ORTHO05D004387 2.5e-216 756.1 496 78.6
ECA238G1380 Erigeron canadensis HOM05D003665 ORTHO05D004387 3.3e-216 755.7 514 73.5
THA.LOC104826364 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 9.5e-216 754.2 509 73.1
ATR0033G036 Amborella trichopoda HOM05D003665 ORTHO05D004387 3.0e-214 749.2 498 76.9
Oeu030188.3 Olea europaea HOM05D003665 ORTHO05D004387 5.7e-213 745.0 562 68.7
Dinv09884 Davidia involucrata HOM05D003665 ORTHO05D004387 1.7e-212 743.4 455 83.5
THA.LOC104815747 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 1.7e-212 743.4 513 72.5
Thhalv10016386m.g Eutrema salsugineum HOM05D003665 ORTHO05D004387 5.4e-211 738.4 508 71.3
arahy.Tifrunner.gnm1.ann1.567MYZ Arachis hypogaea HOM05D003665 ORTHO05D004387 4.5e-210 735.3 486 76.7
CARHR121340 Cardamine hirsuta HOM05D003665 ORTHO05D004387 7.8e-210 734.6 510 71.0
AL4G21640 Arabidopsis lyrata HOM05D003665 ORTHO05D004387 1.3e-209 733.8 508 70.9
BcaC01g04965 Brassica carinata HOM05D003665 ORTHO05D004387 1.3e-209 733.8 508 71.1
COL.COLO4_18330 Corchorus olitorius HOM05D003665 ORTHO05D004387 1.7e-209 733.4 476 77.1
arahy.Tifrunner.gnm1.ann1.IYQC31 Arachis hypogaea HOM05D003665 ORTHO05D004387 6.6e-209 731.5 520 71.7
arahy.Tifrunner.gnm1.ann1.RTB9TW Arachis hypogaea HOM05D003665 ORTHO05D004387 2.5e-208 729.6 518 71.8
Sp4g11190 Schrenkiella parvula HOM05D003665 ORTHO05D004387 3.3e-208 729.2 568 65.7
Nitab4.5_0001195g0040 Nicotiana tabacum HOM05D003665 ORTHO05D004387 4.3e-208 728.8 498 73.7
HanXRQChr14g0452781 Helianthus annuus HOM05D003665 ORTHO05D004387 1.2e-207 727.2 513 70.6
Carub.0004s0931 Capsella rubella HOM05D003665 ORTHO05D004387 2.8e-207 726.1 508 69.9
BolC3t15507H Brassica oleracea HOM05D003665 ORTHO05D004387 4.7e-207 725.3 519 69.6
BraA03t11853Z Brassica rapa HOM05D003665 ORTHO05D004387 1.8e-206 723.4 521 69.1
Lsat_1_v5_gn_1_64201 Lactuca sativa HOM05D003665 ORTHO05D004387 3.0e-206 722.6 518 71.4
AT2G28390 Arabidopsis thaliana HOM05D003665 ORTHO05D004387 4.0e-206 722.2 507 69.8
SEGI_12034 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 8.9e-206 721.1 518 70.3
BcaB01g03101 Brassica carinata HOM05D003665 ORTHO05D004387 1.5e-205 720.3 517 69.1
A03p26380 Brassica napus HOM05D003665 ORTHO05D004387 1.5e-205 720.3 521 68.9
C03p31650 Brassica napus HOM05D003665 ORTHO05D004387 1.5e-205 720.3 521 69.1
Aa31LG5G7830 Aethionema arabicum HOM05D003665 ORTHO05D004387 3.4e-205 719.2 520 68.8
A07p18960 Brassica napus HOM05D003665 ORTHO05D004387 2.9e-204 716.1 513 69.6
BcaB06g25420 Brassica carinata HOM05D003665 ORTHO05D004387 1.4e-203 713.8 498 70.3
C04p23090 Brassica napus HOM05D003665 ORTHO05D004387 2.4e-203 713.0 515 69.1
Lsat_1_v5_gn_2_100120 Lactuca sativa HOM05D003665 ORTHO05D004387 7.0e-203 711.4 511 70.1
BraA07t29601Z Brassica rapa HOM05D003665 ORTHO05D004387 2.7e-202 709.5 518 68.7
BolC4t23802H Brassica oleracea HOM05D003665 ORTHO05D004387 3.5e-202 709.1 518 68.3
Os01g0976000 Oryza sativa ssp. japonica HOM05D003665 ORTHO05D004387 1.0e-201 707.6 517 68.9
Psat0s134g0040 Pisum sativum HOM05D003665 ORTHO05D004387 1.6e-199 700.3 457 76.1
arahy.Tifrunner.gnm1.ann1.B5LWM3 Arachis hypogaea HOM05D003665 ORTHO05D004387 8.0e-199 698.0 489 73.8
Actinidia07137 Actinidia chinensis HOM05D003665 ORTHO05D004387 1.1e-198 697.6 396 87.4
PGR102G1414 Punica granatum HOM05D003665 ORTHO05D004387 4.1e-195 685.6 511 69.9
DCAR_006064 Daucus carota HOM05D003665 ORTHO05D004387 2.5e-192 676.4 478 74.5
Sc06g0010260 Simmondsia chinensis HOM05D003665 ORTHO05D004387 2.8e-191 672.9 438 78.3
SEGI_16973 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 1.8e-190 670.2 449 70.6
HPP92_006598 Vanilla planifolia HOM05D003665 ORTHO05D004387 2.7e-186 656.4 516 67.2
Ca_01409_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 4.6e-186 655.6 421 77.4
Hund03712 Selenicereus undatus HOM05D003665 ORTHO05D004387 2.3e-185 653.3 384 82.8
Gohir.D08G215600 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.4e-179 634.0 425 76.0
Mapoly0115s0070 Marchantia polymorpha HOM05D003665 ORTHO05D004387 1.2e-175 620.9 511 61.3
Ah.12g061180 Amaranthus hybridus HOM05D003665 ORTHO05D004387 2.6e-173 613.2 437 71.2
SMO356G0046 Selaginella moellendorffii HOM05D003665 ORTHO05D004387 8.4e-172 608.2 496 60.7
Nitab4.5_0001211g0250 Nicotiana tabacum HOM05D003665 ORTHO05D004387 7.1e-171 605.1 547 61.2
AUR62037705 Chenopodium quinoa HOM05D003665 ORTHO05D004387 2.4e-166 590.1 546 59.5
Lj2C1027G11 Lonicera japonica HOM05D003665 ORTHO05D004387 3.1e-166 589.7 519 62.8
AUR62020295 Chenopodium quinoa HOM05D003665 ORTHO05D004387 2.7e-162 576.6 516 61.6
Pp3c3_30360 Physcomitrium patens HOM05D003665 ORTHO05D004387 4.6e-162 575.9 516 56.2
Actinidia13994 Actinidia chinensis HOM05D003665 ORTHO05D004387 6.0e-162 575.5 331 85.5
AagrBONN_evm.TU.Sc2ySwM_117.1231 Anthoceros agrestis HOM05D003665 ORTHO05D004387 2.4e-158 563.5 506 54.9
Actinidia12926 Actinidia chinensis HOM05D003665 ORTHO05D004387 2.6e-157 560.1 331 84.3
Nitab4.5_0005900g0050 Nicotiana tabacum HOM05D003665 ORTHO05D004387 4.5e-157 559.3 522 60.3
Sabra04G0142700 Salix brachista HOM05D003665 ORTHO05D004387 5.5e-155 552.4 377 74.3
AagrBONN_evm.TU.Sc2ySwM_228.3586 Anthoceros agrestis HOM05D003665 ORTHO05D004387 4.9e-148 529.3 473 56.2
unitig_899.g14918 Utricularia gibba HOM05D003665 ORTHO05D004387 1.6e-146 524.2 516 56.0
Pp3c10_13820 Physcomitrium patens HOM05D003665 ORTHO05D004387 6.3e-143 512.3 471 58.4
CDE08G0353 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 4.5e-141 506.1 312 79.5
Peaxi162Scf00106g00431 Petunia axillaris HOM05D003665 ORTHO05D004387 3.4e-133 479.9 464 57.3
Zm00001eb139700 Zea mays HOM05D003665 ORTHO05D004387 1.0e-129 468.4 329 69.3
PGSC0003DMG400019504 Solanum tuberosum HOM05D003665 ORTHO05D004387 1.9e-115 421.0 284 75.7
Atru.chr3.3619 Acer truncatum HOM05D003665 ORTHO05D004387 1.4e-105 388.3 248 75.4
CAN.G479.67 Capsicum annuum HOM05D003665 ORTHO05D004387 5.5e-99 366.3 252 74.6
BcaB06g25423 Brassica carinata HOM05D003665 ORTHO05D004387 1.2e-90 338.6 288 61.8
CDE02G0373 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 1.6e-90 338.2 219 75.3
CDE08G1291 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 3.4e-72 277.3 201 71.6
CBR_g29308 Chara braunii HOM05D000019 ORTHO05D000002 3.7e-71 273.9 211 61.6
Lsat_1_v5_gn_8_29480 Lactuca sativa HOM05D003665 ORTHO05D004387 7.1e-62 243.0 163 73.6
CDE02G1163 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 2.6e-56 224.6 201 61.2
MCO05G084 Micromonas commoda HOM05D003665 ORTHO05D004387 8.4e-55 219.5 650 27.1
SHI09320 Sapria himalayana HOM05D003665 ORTHO05D004387 1.9e-54 218.4 190 58.4
Cfa025752 Carpinus fangiana HOM05D003665 ORTHO05D004387 1.7e-52 211.8 522 28.9
Cre03.g154500 Chlamydomonas reinhardtii HOM05D003665 ORTHO05D004387 2.3e-52 211.5 270 43.0
TPR.G35439 Trifolium pratense HOM05D003665 ORTHO05D004387 6.6e-52 209.9 143 73.4
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 8.7e-52 209.5 153 69.9
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 9.0e-49 199.5 140 70.7
Lsat_1_v5_gn_6_45780 Lactuca sativa HOM05D003665 ORTHO05D004387 5.8e-48 196.8 133 72.2
Actinidia13995 Actinidia chinensis HOM05D003665 ORTHO05D004387 3.2e-46 191.0 105 87.6
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 4.6e-45 187.2 132 68.9
Duzib235G1059 Durio zibethinus HOM05D003665 ORTHO05D004387 4.3e-43 180.6 154 65.6
Lsat_1_v5_gn_6_39960 Lactuca sativa HOM05D003665 ORTHO05D004387 1.3e-42 179.1 123 72.4
arahy.Tifrunner.gnm1.ann1.3H693L Arachis hypogaea HOM05D003665 ORTHO05D004387 5.5e-38 163.7 126 66.7
SHI09317 Sapria himalayana HOM05D003665 ORTHO05D004387 7.9e-29 133.3 78 79.5
Duzib084G1104 Durio zibethinus HOM05D003665 ORTHO05D004387 1.8e-28 132.1 102 68.6
TPR.G15544 Trifolium pratense HOM05D003665 ORTHO05D004387 1.5e-27 129.0 63 85.7
Ca_23093_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 4.5e-24 117.5 65 87.7
VMungo0225G0001 Vigna mungo HOM05D003665 ORTHO05D004387 2.9e-23 114.8 68 82.4
Glyma.11G146000 Glycine max HOM05D003665 ORTHO05D004387 4.6e-21 107.5 109 59.6
SHI09315 Sapria himalayana HOM05D003665 ORTHO05D004387 1.1e-19 102.8 68 70.6
VMungo1074G0001 Vigna mungo HOM05D003665 ORTHO05D004387 2.5e-19 101.7 115 51.3
SHI09316 Sapria himalayana HOM05D003665 ORTHO05D004387 3.7e-18 97.8 63 69.8
BolC4t27275H Brassica oleracea HOM05D003665 ORTHO05D004387 3.9e-12 77.8 129 41.1
Lalb_Chr22g0350671 Lupinus albus HOM05D003665 ORTHO05D004387 9.7e-11 73.2 43 83.7
HanXRQChr06g0179151 Helianthus annuus HOM05D003665 ORTHO05D004387 1.2e-08 66.2 36 83.3
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 2.5e-06 58.5 32 87.5
C04p57550 Brassica napus HOM05D003665 ORTHO05D040370 3.2e-06 58.2 41 58.5
Lsat_1_v5_gn_4_144501 Lactuca sativa HOM05D000361 ORTHO05D005006 7.2e-06 57.0 32 84.4


User provided reference genes

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