Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO380G0003 Papaver somniferum HOM05D001445 ORTHO05D001261 7.9e-61 236.9 116 100.0
PSO573G0039 Papaver somniferum HOM05D001445 ORTHO05D001261 5.1e-52 207.6 116 87.9
PSO775G0001 Papaver somniferum HOM05D001445 ORTHO05D001261 5.1e-52 207.6 116 87.9
PSO384G1724 Papaver somniferum HOM05D001445 ORTHO05D001261 2.5e-46 188.7 116 81.9
PSO832G0663 Papaver somniferum HOM05D001445 ORTHO05D001261 1.2e-29 133.3 110 60.9
PSO832G1165 Papaver somniferum HOM05D001445 ORTHO05D001261 4.7e-29 131.3 110 60.0
PSO151G0158 Papaver somniferum HOM05D001445 ORTHO05D001261 2.8e-26 122.1 110 57.3
PSO573G0024 Papaver somniferum HOM05D001445 ORTHO05D001261 1.2e-19 100.1 80 63.8
TAR375G0630 Trochodendron aralioides HOM05D001445 ORTHO05D001261 1.8e-17 92.8 107 43.0
TAR375G1152 Trochodendron aralioides HOM05D001445 ORTHO05D001261 9.1e-17 90.5 107 43.9
PSO478G2336 Papaver somniferum HOM05D001445 ORTHO05D001261 3.5e-16 88.6 108 45.4
PSO782G5274 Papaver somniferum HOM05D001445 ORTHO05D001261 2.2e-15 85.9 106 44.3
TAR073G0001 Trochodendron aralioides HOM05D001445 ORTHO05D001261 8.5e-15 84.0 107 43.0
PSO478G4988 Papaver somniferum HOM05D001445 ORTHO05D001261 3.2e-14 82.0 108 43.5
TAR629G2132 Trochodendron aralioides HOM05D001445 ORTHO05D001261 5.5e-14 81.3 110 37.3
PSO782G4884 Papaver somniferum HOM05D001445 ORTHO05D001261 2.1e-13 79.3 109 42.2
PSO782G4131 Papaver somniferum HOM05D001445 ORTHO05D001261 4.7e-13 78.2 108 42.6
TAR629G3049 Trochodendron aralioides HOM05D001445 ORTHO05D001261 4.7e-13 78.2 106 38.7
Ciclev10023652m.g Citrus clementina HOM05D001445 ORTHO05D001261 8.0e-13 77.4 107 40.2
MD06G1042400 Malus domestica HOM05D001445 ORTHO05D001261 1.0e-12 77.0 112 39.3
PSO081G0137 Papaver somniferum HOM05D001445 ORTHO05D001261 1.0e-12 77.0 113 39.8
TAR375G0055 Trochodendron aralioides HOM05D001445 ORTHO05D001261 1.8e-12 76.3 111 37.8
CAN.G572.48 Capsicum annuum HOM05D001445 ORTHO05D001261 3.0e-12 75.5 111 39.6
CAN.G572.46 Capsicum annuum HOM05D001445 ORTHO05D001261 4.0e-12 75.1 111 39.6
Peaxi162Scf00084g00062 Petunia axillaris HOM05D001445 ORTHO05D001261 5.2e-12 74.7 111 37.8
RcHm_v2.0_Chr7g0207991 Rosa chinensis HOM05D001445 ORTHO05D001261 5.2e-12 74.7 104 40.4
Nn1g00654 Nelumbo nucifera HOM05D001445 ORTHO05D001261 6.8e-12 74.3 111 37.8
Sabra14G0032000 Salix brachista HOM05D001445 ORTHO05D001261 8.8e-12 73.9 110 36.4
Eucgr.D01174 Eucalyptus grandis HOM05D001445 ORTHO05D001261 3.4e-11 72.0 113 36.3
PGSC0003DMG400001844 Solanum tuberosum HOM05D001445 ORTHO05D001261 3.4e-11 72.0 111 36.9
Aqoxy3G02557 Aquilegia oxysepala HOM05D001445 ORTHO05D001261 4.4e-11 71.6 116 37.9
Aqoxy3G02555 Aquilegia oxysepala HOM05D001445 ORTHO05D001261 5.7e-11 71.2 106 36.8
Dinv25174 Davidia involucrata HOM05D001445 ORTHO05D001261 5.7e-11 71.2 111 38.7
Prupe.5G048600 Prunus persica HOM05D001445 ORTHO05D001261 5.7e-11 71.2 106 37.7
Dinv28905 Davidia involucrata HOM05D001445 ORTHO05D001261 7.5e-11 70.9 111 37.8
MD06G1041900 Malus domestica HOM05D001445 ORTHO05D001261 9.8e-11 70.5 114 36.0
Hma1.2p1_0414F.1_g147630 Hydrangea macrophylla HOM05D001445 ORTHO05D001261 1.3e-10 70.1 104 38.5
PSO081G0031 Papaver somniferum HOM05D001445 ORTHO05D001261 1.7e-10 69.7 107 38.3
PSO081G0157 Papaver somniferum HOM05D001445 ORTHO05D001261 1.7e-10 69.7 107 38.3
PSO081G0174 Papaver somniferum HOM05D001445 ORTHO05D001261 1.7e-10 69.7 107 38.3
RcHm_v2.0_Chr1g0344031 Rosa chinensis HOM05D001445 ORTHO05D001261 1.7e-10 69.7 113 33.6
COL.COLO4_12351 Corchorus olitorius HOM05D001445 ORTHO05D001261 2.8e-10 68.9 107 37.4
Nn1g02148 Nelumbo nucifera HOM05D001445 ORTHO05D001261 2.8e-10 68.9 106 35.8
Oeu018160.1 Olea europaea HOM05D001445 ORTHO05D001261 2.8e-10 68.9 109 34.9
Hma1.2p1_0311F.1_g121170 Hydrangea macrophylla HOM05D001445 ORTHO05D001261 3.7e-10 68.6 111 35.1
Lsat_1_v5_gn_7_11841 Lactuca sativa HOM05D001445 ORTHO05D001261 3.7e-10 68.6 118 37.3
Manes.15G171900 Manihot esculenta HOM05D001445 ORTHO05D001261 3.7e-10 68.6 109 38.5
Nitab4.5_0005034g0010 Nicotiana tabacum HOM05D001445 ORTHO05D001261 3.7e-10 68.6 107 31.8
Potri.014G044100 Populus trichocarpa HOM05D001445 ORTHO05D001261 3.7e-10 68.6 101 36.6
Prupe.5G048900 Prunus persica HOM05D001445 ORTHO05D001261 3.7e-10 68.6 107 38.3
Sopen01g035440 Solanum pennellii HOM05D001445 ORTHO05D001261 6.3e-10 67.8 107 30.8
Ciclev10032808m.g Citrus clementina HOM05D001445 ORTHO05D001261 8.3e-10 67.4 111 38.7
PSO675G4879 Papaver somniferum HOM05D001445 ORTHO05D001261 8.3e-10 67.4 113 39.8
Sopen08g025990 Solanum pennellii HOM05D001445 ORTHO05D001261 8.3e-10 67.4 114 36.8
Actinidia25936 Actinidia chinensis HOM05D001445 ORTHO05D001261 1.1e-09 67.0 111 37.8
CSS0020469 Camellia sinensis var. sinensis HOM05D001445 ORTHO05D001261 1.1e-09 67.0 107 31.8
CAN.G756.16 Capsicum annuum HOM05D001445 ORTHO05D001261 1.1e-09 67.0 108 32.4
PSO026G0001 Papaver somniferum HOM05D001445 ORTHO05D001261 1.1e-09 67.0 109 36.7
Rhsim11G0009400 Rhododendron simsii HOM05D001445 ORTHO05D001261 1.1e-09 67.0 111 36.0
FAN04G1716 Fragaria x ananassa HOM05D001445 ORTHO05D001261 1.4e-09 66.6 109 36.7
Solyc08g077400.3 Solanum lycopersicum HOM05D001445 ORTHO05D001261 1.4e-09 66.6 111 35.1
Migut.N01714 Erythranthe guttata HOM05D001445 ORTHO05D001261 1.8e-09 66.2 101 30.7
FAN13G3027 Fragaria x ananassa HOM05D001445 ORTHO05D001261 1.8e-09 66.2 107 36.4
PSO541G5973 Papaver somniferum HOM05D001445 ORTHO05D001261 1.8e-09 66.2 109 36.7
RcHm_v2.0_Chr7g0207981 Rosa chinensis HOM05D001445 ORTHO05D001261 1.8e-09 66.2 110 40.0
Solyc01g088590.5 Solanum lycopersicum HOM05D001445 ORTHO05D001261 1.8e-09 66.2 107 29.9
Cc02_g25640 Coffea canephora HOM05D001445 ORTHO05D001261 2.4e-09 65.9 101 33.7
Duzib133G0634 Durio zibethinus HOM05D001445 ORTHO05D001261 2.4e-09 65.9 107 33.6
Lj2P248T28 Lonicera japonica HOM05D001445 ORTHO05D001261 2.4e-09 65.9 115 33.0
PSO081G0055 Papaver somniferum HOM05D001445 ORTHO05D001261 2.4e-09 65.9 107 37.4
TAR375G0246 Trochodendron aralioides HOM05D001445 ORTHO05D001261 2.4e-09 65.9 111 34.2
MSTRG.4961 Avicennia marina HOM05D001445 ORTHO05D001261 3.1e-09 65.5 107 31.8
PSO081G0057 Papaver somniferum HOM05D001445 ORTHO05D001261 3.1e-09 65.5 105 37.1
PSO541G5291 Papaver somniferum HOM05D001445 ORTHO05D001261 4.1e-09 65.1 109 35.8
Peaxi162Scf00745g00003 Petunia axillaris HOM05D001445 ORTHO05D001261 4.1e-09 65.1 92 35.9
CsaV3_1G002510 Cucumis sativus L. HOM05D001445 ORTHO05D001261 5.4e-09 64.7 107 35.5
CsaV3_6G006710 Cucumis sativus L. HOM05D005488 ORTHO05D001261 5.4e-09 64.7 103 31.1
ClCG06G000830 Citrullus lanatus HOM05D001445 ORTHO05D001261 7.0e-09 64.3 107 32.7
FAN08G1111 Fragaria x ananassa HOM05D001445 ORTHO05D001261 7.0e-09 64.3 107 35.5
HanXRQChr04g0115481 Helianthus annuus HOM05D001445 ORTHO05D001261 7.0e-09 64.3 115 31.3
MD02G1225200 Malus domestica HOM05D001445 ORTHO05D001261 7.0e-09 64.3 107 33.6
Oeu024392.1 Olea europaea HOM05D001445 ORTHO05D001261 7.0e-09 64.3 111 32.4
PGSC0003DMG400001728 Solanum tuberosum HOM05D001445 ORTHO05D001261 7.0e-09 64.3 107 30.8
Actinidia30953 Actinidia chinensis HOM05D001445 ORTHO05D001261 9.1e-09 63.9 100 32.0
CDE12G0631 Ceratophyllum demersum HOM05D001445 ORTHO05D001261 9.1e-09 63.9 111 30.6
FvH4_5g20940 Fragaria vesca HOM05D001445 ORTHO05D001261 9.1e-09 63.9 107 35.5
FvH4_5g20950 Fragaria vesca HOM05D001445 ORTHO05D001261 9.1e-09 63.9 107 35.5
FAN08G0902 Fragaria x ananassa HOM05D001445 ORTHO05D001261 9.1e-09 63.9 109 35.8
FAN18G2022 Fragaria x ananassa HOM05D001445 ORTHO05D001261 9.1e-09 63.9 109 35.8
FAN18G4149 Fragaria x ananassa HOM05D001445 ORTHO05D001261 9.1e-09 63.9 107 35.5
Gohir.A07G126650 Gossypium hirsutum HOM05D001445 ORTHO05D001261 9.1e-09 63.9 104 37.5
Oeu024391.1 Olea europaea HOM05D001445 ORTHO05D001261 9.1e-09 63.9 110 31.8
TWI14G0207 Tripterygium wilfordii HOM05D001445 ORTHO05D001261 9.1e-09 63.9 108 33.3
TWI59G0004 Tripterygium wilfordii HOM05D001445 ORTHO05D001261 1.6e-08 63.2 101 31.7
CiPaw.11G087100 Carya illinoinensis HOM05D001445 ORTHO05D001261 2.0e-08 62.8 107 34.6
PSO170G5213 Papaver somniferum HOM05D001445 ORTHO05D001261 2.7e-08 62.4 105 35.2
ClCG06G000850 Citrullus lanatus HOM05D001445 ORTHO05D001261 3.5e-08 62.0 103 32.0
ECA236G4359 Erigeron canadensis HOM05D001445 ORTHO05D001261 3.5e-08 62.0 102 31.4
TWI81G0239 Tripterygium wilfordii HOM05D001445 ORTHO05D001261 3.5e-08 62.0 111 36.9
CAN.G572.49 Capsicum annuum HOM05D001445 ORTHO05D001261 4.5e-08 61.6 94 35.1
Migut.B01486 Erythranthe guttata HOM05D001445 ORTHO05D001261 4.5e-08 61.6 103 33.0
Lj3g0025567 Lotus japonicus HOM05D001445 ORTHO05D001261 4.5e-08 61.6 115 29.6
vmacro21087 Vaccinium macrocarpon HOM05D001445 ORTHO05D001261 4.5e-08 61.6 114 29.8
Actinidia21612 Actinidia chinensis HOM05D001445 ORTHO05D001261 5.9e-08 61.2 113 31.9
Ciclev10033644m.g Citrus clementina HOM05D001445 ORTHO05D001261 5.9e-08 61.2 105 37.1
Nitab4.5_0004088g0040 Nicotiana tabacum HOM05D001445 ORTHO05D001261 7.7e-08 60.8 95 31.6
PSO017G6871 Papaver somniferum HOM05D001445 ORTHO05D001261 7.7e-08 60.8 105 35.2
PGR119G1148 Punica granatum HOM05D003556 ORTHO05D003404 7.7e-08 60.8 114 30.7
VMungo0251G1280 Vigna mungo HOM05D001445 ORTHO05D001261 7.7e-08 60.8 103 31.1
MSTRG.17106 Avicennia marina HOM05D001445 ORTHO05D001261 1.0e-07 60.5 110 29.1
FvH4_5g20930 Fragaria vesca HOM05D001445 ORTHO05D001261 1.0e-07 60.5 110 36.4
FAN18G2178 Fragaria x ananassa HOM05D001445 ORTHO05D001261 1.0e-07 60.5 110 36.4
Gohir.D08G161800 Gossypium hirsutum HOM05D001445 ORTHO05D001261 1.0e-07 60.5 106 34.0
Gorai.004G168200 Gossypium raimondii HOM05D001445 ORTHO05D001261 1.0e-07 60.5 106 34.0
Aqoxy5G03639 Aquilegia oxysepala HOM05D001445 ORTHO05D001261 1.3e-07 60.1 77 35.1
PGR004G0072 Punica granatum HOM05D001445 ORTHO05D001261 1.3e-07 60.1 101 35.6
vmacro21086 Vaccinium macrocarpon HOM05D001445 ORTHO05D001261 1.3e-07 60.1 107 30.8
Atru.chr6.1791 Acer truncatum HOM05D001445 ORTHO05D001261 1.7e-07 59.7 111 36.0
CANSAT21G0723 Cannabis sativa HOM05D001445 ORTHO05D001261 1.7e-07 59.7 131 33.6
Cpa.g.sc29.3 Carica papaya HOM05D001445 ORTHO05D001261 1.7e-07 59.7 99 38.4
RcHm_v2.0_Chr7g0208011 Rosa chinensis HOM05D001445 ORTHO05D001261 1.7e-07 59.7 109 33.9
THA.LOC104824471 Tarenaya hassleriana HOM05D001445 ORTHO05D001261 1.7e-07 59.7 101 34.7
Rhsim01G0143600 Rhododendron simsii HOM05D001445 ORTHO05D001261 2.3e-07 59.3 101 30.7
SalBow5G1724 Salvia bowleyana HOM05D001445 ORTHO05D001261 2.3e-07 59.3 105 30.5
MSTRG.17105 Avicennia marina HOM05D001445 ORTHO05D001261 2.9e-07 58.9 104 29.8
CiPaw.13G022000 Carya illinoinensis HOM05D001445 ORTHO05D001261 2.9e-07 58.9 111 30.6
ClCG06G016040 Citrullus lanatus HOM05D001445 ORTHO05D001261 2.9e-07 58.9 107 32.7
MELO3C022456.2 Cucumis melo HOM05D001445 ORTHO05D001261 2.9e-07 58.9 108 29.6
FAN08G3072 Fragaria x ananassa HOM05D001445 ORTHO05D001261 2.9e-07 58.9 110 35.5
PSO017G7346 Papaver somniferum HOM05D001445 ORTHO05D001261 2.9e-07 58.9 109 32.1
PSO832G2602 Papaver somniferum HOM05D003556 ORTHO05D003404 2.9e-07 58.9 106 28.3
Solyc01g088575.1 Solanum lycopersicum HOM05D001445 ORTHO05D001261 2.9e-07 58.9 90 32.2
TPR.G39508 Trifolium pratense HOM05D001445 ORTHO05D001261 2.9e-07 58.9 115 27.0
Dinv40359 Davidia involucrata HOM05D003556 ORTHO05D003404 3.8e-07 58.5 99 27.3
HanXRQChr16g0522931 Helianthus annuus HOM05D001445 ORTHO05D001261 3.8e-07 58.5 107 33.6
Psat0s116g0280 Pisum sativum HOM05D000064 ORTHO05D001353 3.8e-07 58.5 107 34.6
CDE07G1929 Ceratophyllum demersum HOM05D001445 ORTHO05D001261 5.0e-07 58.2 106 33.0
PSO210G6958 Papaver somniferum HOM05D003556 ORTHO05D003404 5.0e-07 58.2 106 28.3
RcHm_v2.0_Chr1g0344001 Rosa chinensis HOM05D001445 ORTHO05D001261 5.0e-07 58.2 111 29.7
Sc07g0008940 Simmondsia chinensis HOM05D001445 ORTHO05D001261 5.0e-07 58.2 76 43.4
CDE04G0621 Ceratophyllum demersum HOM05D001445 ORTHO05D001261 6.6e-07 57.8 114 28.9
MELO3C017187.2 Cucumis melo HOM05D001445 ORTHO05D001261 6.6e-07 57.8 107 31.8
Medtr8g009300 Medicago truncatula HOM05D001445 ORTHO05D001261 6.6e-07 57.8 115 26.1
CANSAT56G2517 Cannabis sativa HOM05D001445 ORTHO05D003404 8.6e-07 57.4 101 29.7
Eucgr.L02459 Eucalyptus grandis HOM05D001445 ORTHO05D001261 8.6e-07 57.4 99 36.4
Gohir.A08G140800 Gossypium hirsutum HOM05D001445 ORTHO05D001261 8.6e-07 57.4 106 34.0
Manes.05G058600 Manihot esculenta HOM05D001445 ORTHO05D001261 8.6e-07 57.4 107 29.0
Oeu002900.1 Olea europaea HOM05D001445 ORTHO05D001261 8.6e-07 57.4 101 31.7
AUR62025289 Chenopodium quinoa HOM05D001445 ORTHO05D001261 1.1e-06 57.0 108 31.5
Eucgr.D01180 Eucalyptus grandis HOM05D001445 ORTHO05D001261 1.1e-06 57.0 99 36.4
Eucgr.D01181 Eucalyptus grandis HOM05D001445 ORTHO05D001261 1.1e-06 57.0 99 35.4
Hma1.2p1_0311F.1_g121180 Hydrangea macrophylla HOM05D001445 ORTHO05D001261 1.1e-06 57.0 94 34.0
PSO782G0985 Papaver somniferum HOM05D001445 ORTHO05D001261 1.1e-06 57.0 113 32.7
Prupe.2G115600 Prunus persica HOM05D001445 ORTHO05D001261 1.1e-06 57.0 107 32.7
MELO3C003367.2 Cucumis melo HOM05D001445 ORTHO05D001261 1.5e-06 56.6 103 34.0
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 1.5e-06 56.6 111 24.3
MBI13_g01661_MAGBIO Magnolia biondii HOM05D000036 ORTHO05D002265 1.5e-06 56.6 113 32.7
Thecc.09G068900 Theobroma cacao HOM05D001445 ORTHO05D003404 1.5e-06 56.6 86 38.4
Cpa.g.sc52.68 Carica papaya HOM05D001445 ORTHO05D001261 1.9e-06 56.2 104 32.7
Oeu024389.1 Olea europaea HOM05D001445 ORTHO05D001261 1.9e-06 56.2 104 29.8
Phvul.003G227500 Phaseolus vulgaris HOM05D001445 ORTHO05D001261 1.9e-06 56.2 107 29.9
Sc08g0009050 Simmondsia chinensis HOM05D001445 ORTHO05D001261 1.9e-06 56.2 87 39.1
Aa31LG9G5990 Aethionema arabicum HOM05D001445 ORTHO05D001261 2.5e-06 55.8 78 37.2
Potri.003G086600 Populus trichocarpa HOM05D001445 ORTHO05D001261 2.5e-06 55.8 111 31.5
unitig_749.g13774 Utricularia gibba HOM05D001445 ORTHO05D001261 2.5e-06 55.8 108 31.5
MELO3C022458.2 Cucumis melo HOM05D001445 ORTHO05D001261 3.3e-06 55.5 107 30.8
HanXRQChr07g0188521 Helianthus annuus HOM05D001445 ORTHO05D001261 3.3e-06 55.5 107 31.8
RcHm_v2.0_Chr1g0344051 Rosa chinensis HOM05D001445 ORTHO05D001261 3.3e-06 55.5 113 31.0
unitig_750.g28405 Utricularia gibba HOM05D001445 ORTHO05D001261 3.3e-06 55.5 104 29.8
HPP92_014651 Vanilla planifolia HOM05D001445 ORTHO05D001261 3.3e-06 55.5 108 27.8
Lsat_1_v5_gn_4_38540 Lactuca sativa HOM05D001445 ORTHO05D001261 4.2e-06 55.1 109 28.4
MBI11_g10522_MAGBIO Magnolia biondii HOM05D020019 ORTHO05D003404 4.2e-06 55.1 108 30.6
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 4.2e-06 55.1 101 30.7
CSS0045791 Camellia sinensis var. sinensis HOM05D001445 ORTHO05D001261 5.5e-06 54.7 111 27.9
Carub.0008s0091 Capsella rubella HOM05D001445 ORTHO05D001261 7.2e-06 54.3 82 36.6
CDE06G2513 Ceratophyllum demersum HOM05D001445 ORTHO05D001261 7.2e-06 54.3 77 42.9
CDE07G0552 Ceratophyllum demersum HOM05D001445 ORTHO05D003404 7.2e-06 54.3 76 42.1
SHI15103 Sapria himalayana HOM05D003556 ORTHO05D003404 7.2e-06 54.3 108 31.5
CANSAT56G1763 Cannabis sativa HOM05D001445 ORTHO05D001261 9.5e-06 53.9 101 28.7
Nitab4.5_0008694g0020 Nicotiana tabacum HOM05D001445 ORTHO05D001261 9.5e-06 53.9 83 39.8
Os01g0311700 Oryza sativa ssp. japonica HOM05D003556 ORTHO05D003404 9.5e-06 53.9 104 32.7
PSO170G5332 Papaver somniferum HOM05D001445 ORTHO05D001261 9.5e-06 53.9 51 56.9
Sp2g11720 Schrenkiella parvula HOM05D001445 ORTHO05D001261 9.5e-06 53.9 82 36.6
THA.LOC104819134 Tarenaya hassleriana HOM05D001445 ORTHO05D001261 9.5e-06 53.9 118 32.2


User provided reference genes

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