Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO357G0527 Papaver somniferum HOM05D006322 ORTHO05D007716 6.2e-134 480.7 230 100.0
PSO170G6693 Papaver somniferum HOM05D006322 ORTHO05D007716 6.4e-123 444.1 230 93.5
TAR636G2967 Trochodendron aralioides HOM05D006322 ORTHO05D007716 8.5e-91 337.4 224 68.3
Manes.03G203000 Manihot esculenta HOM05D006322 ORTHO05D007716 5.5e-90 334.7 225 69.3
COL.COLO4_34636 Corchorus olitorius HOM05D006322 ORTHO05D007716 1.8e-88 329.7 225 67.1
Thecc.04G298700 Theobroma cacao HOM05D006322 ORTHO05D007716 5.2e-88 328.2 215 69.3
Solyc11g007570.2 Solanum lycopersicum HOM05D006322 ORTHO05D007716 1.5e-87 326.6 217 71.0
Sopen11g003410 Solanum pennellii HOM05D006322 ORTHO05D007716 9.7e-87 323.9 223 69.1
Migut.N00046 Erythranthe guttata HOM05D006322 ORTHO05D007716 3.7e-86 322.0 222 66.7
Haze_01283 Corylus avellana HOM05D006322 ORTHO05D007716 8.2e-86 320.9 216 68.1
PGSC0003DMG400027315 Solanum tuberosum HOM05D006322 ORTHO05D007716 1.1e-85 320.5 213 70.4
Lju470A16T21 Lonicera japonica HOM05D006322 ORTHO05D007716 3.1e-85 318.9 217 68.2
QL06p011774 Quercus lobata HOM05D006322 ORTHO05D007716 4.1e-85 318.5 216 66.7
Gohir.D09G235800 Gossypium hirsutum HOM05D006322 ORTHO05D007716 5.3e-85 318.2 218 65.6
Gorai.006G258900 Gossypium raimondii HOM05D006322 ORTHO05D007716 5.3e-85 318.2 218 65.6
Gohir.A09G235000 Gossypium hirsutum HOM05D006322 ORTHO05D007716 7.0e-85 317.8 218 65.1
RcHm_v2.0_Chr4g0424801 Rosa chinensis HOM05D006322 ORTHO05D007716 7.0e-85 317.8 216 67.1
Nitab4.5_0001807g0060 Nicotiana tabacum HOM05D006322 ORTHO05D007716 1.2e-84 317.0 220 68.2
Glyma.17G032700 Glycine max HOM05D006322 ORTHO05D007716 3.5e-84 315.5 217 66.4
MD16G1155500 Malus domestica HOM05D006322 ORTHO05D007716 3.5e-84 315.5 228 63.6
Duzib151G0960 Durio zibethinus HOM05D006322 ORTHO05D007716 4.5e-84 315.1 217 65.9
Prupe.1G119400 Prunus persica HOM05D006322 ORTHO05D007716 4.5e-84 315.1 226 65.0
MBI19_g07237_MAGBIO Magnolia biondii HOM05D006322 ORTHO05D007716 5.9e-84 314.7 228 64.0
Sabra08G0080400 Salix brachista HOM05D006322 ORTHO05D007716 5.9e-84 314.7 215 66.5
Atru.chr4.3025 Acer truncatum HOM05D006322 ORTHO05D007716 7.7e-84 314.3 226 65.0
Cfa015332 Carpinus fangiana HOM05D006322 ORTHO05D007716 7.7e-84 314.3 216 67.1
Aqoxy2G02768 Aquilegia oxysepala HOM05D006322 ORTHO05D007716 3.8e-83 312.0 223 65.5
Cc03_g00960 Coffea canephora HOM05D006322 ORTHO05D007716 3.8e-83 312.0 230 64.8
Actinidia40367 Actinidia chinensis HOM05D006322 ORTHO05D007716 5.0e-83 311.6 217 68.7
Duzib052G0456 Durio zibethinus HOM05D006322 ORTHO05D007716 5.0e-83 311.6 213 68.5
Oeu019970.1 Olea europaea HOM05D006322 ORTHO05D007716 5.0e-83 311.6 219 64.4
EL10Ac3g05469 Beta vulgaris HOM05D006322 ORTHO05D007716 6.5e-83 311.2 215 66.0
Ciclev10005751m.g Citrus clementina HOM05D006322 ORTHO05D007716 8.5e-83 310.8 233 63.1
Eucgr.A00353 Eucalyptus grandis HOM05D006322 ORTHO05D007716 8.5e-83 310.8 216 66.7
Potri.008G106600 Populus trichocarpa HOM05D006322 ORTHO05D007716 1.5e-82 310.1 216 64.8
Peaxi162Scf00244g00413 Petunia axillaris HOM05D006322 ORTHO05D007716 1.9e-82 309.7 217 65.9
VMungo1215G3118 Vigna mungo HOM05D006322 ORTHO05D007716 1.9e-82 309.7 226 61.5
CiPaw.01G139400 Carya illinoinensis HOM05D006322 ORTHO05D007716 4.2e-82 308.5 212 64.6
Nn3g21692 Nelumbo nucifera HOM05D006322 ORTHO05D007716 4.2e-82 308.5 222 65.3
CSS0012053 Camellia sinensis var. sinensis HOM05D006322 ORTHO05D007716 5.5e-82 308.1 222 64.9
SGA_v2.0_scaffold119G32659 Striga asiatica HOM05D006322 ORTHO05D007716 5.5e-82 308.1 213 64.3
Nitab4.5_0002259g0050 Nicotiana tabacum HOM05D006322 ORTHO05D007716 6.1e-81 304.7 220 65.0
HanXRQChr13g0395571 Helianthus annuus HOM05D006322 ORTHO05D007716 1.0e-80 303.9 215 62.8
Cpa.g.sc9.74 Carica papaya HOM05D006322 ORTHO05D007716 2.3e-80 302.8 216 63.4
Medtr4g121940 Medicago truncatula HOM05D006322 ORTHO05D007716 2.3e-80 302.8 217 63.6
FAN07G2163 Fragaria x ananassa HOM05D006322 ORTHO05D007716 3.0e-80 302.4 216 63.0
Lsat_1_v5_gn_6_16821 Lactuca sativa HOM05D006322 ORTHO05D007716 3.0e-80 302.4 218 63.8
Phvul.003G113400 Phaseolus vulgaris HOM05D006322 ORTHO05D007716 3.0e-80 302.4 217 62.7
Lalb_Chr13g0298441 Lupinus albus HOM05D006322 ORTHO05D007716 6.7e-80 301.2 215 64.7
Hund11963 Selenicereus undatus HOM05D006322 ORTHO05D007716 1.5e-79 300.1 214 64.0
arahy.Tifrunner.gnm1.ann1.WPA2XH Arachis hypogaea HOM05D006322 ORTHO05D007716 2.6e-79 299.3 215 63.3
ECA233G0552 Erigeron canadensis HOM05D006322 ORTHO05D007716 3.3e-79 298.9 215 63.3
Psat4g024200 Pisum sativum HOM05D006322 ORTHO05D007716 3.3e-79 298.9 217 61.8
SalBow5G5236 Salvia bowleyana HOM05D006322 ORTHO05D007716 3.3e-79 298.9 213 65.7
Lj4g0019910 Lotus japonicus HOM05D006322 ORTHO05D007716 4.4e-79 298.5 217 63.1
arahy.Tifrunner.gnm1.ann1.57P81C Arachis hypogaea HOM05D006322 ORTHO05D007716 2.8e-78 295.8 215 62.3
TWI09G0431 Tripterygium wilfordii HOM05D006322 ORTHO05D007716 3.7e-78 295.4 214 65.4
GSVIVG01035010001 Vitis vinifera HOM05D006322 ORTHO05D007716 3.7e-78 295.4 205 66.8
PGR031G3552 Punica granatum HOM05D006322 ORTHO05D007716 6.3e-78 294.7 214 63.1
Sc25g0003310 Simmondsia chinensis HOM05D006322 ORTHO05D007716 1.1e-77 293.9 214 62.6
CANSAT78G1173 Cannabis sativa HOM05D006322 ORTHO05D007716 2.4e-77 292.7 228 61.4
DCAR_027007 Daucus carota HOM05D006322 ORTHO05D007716 5.3e-77 291.6 271 52.8
Ca_21447_v3 Cicer arietinum L. HOM05D006322 ORTHO05D007716 7.0e-77 291.2 217 60.4
MSTRG.24817 Avicennia marina HOM05D006322 ORTHO05D007716 1.6e-76 290.0 215 62.3
Psat4g024280 Pisum sativum HOM05D006322 ORTHO05D007716 1.6e-76 290.0 214 59.8
vmacro08057 Vaccinium macrocarpon HOM05D006322 ORTHO05D007716 2.7e-76 289.3 226 58.8
Hma1.2p1_0078F.1_g040000 Hydrangea macrophylla HOM05D006322 ORTHO05D007716 3.5e-76 288.9 229 59.8
Dinv44297 Davidia involucrata HOM05D006322 ORTHO05D007716 4.5e-76 288.5 181 74.0
C03p48530 Brassica napus HOM05D006322 ORTHO05D007716 5.9e-76 288.1 216 61.6
BcaB04g18916 Brassica carinata HOM05D006322 ORTHO05D007716 1.3e-75 287.0 216 61.1
BcaC01g03797 Brassica carinata HOM05D006322 ORTHO05D007716 1.3e-75 287.0 216 61.1
BolC3t17131H Brassica oleracea HOM05D006322 ORTHO05D007716 1.3e-75 287.0 216 61.1
Thhalv10021446m.g Eutrema salsugineum HOM05D006322 ORTHO05D007716 2.2e-75 286.2 216 59.7
BraA03t13148Z Brassica rapa HOM05D006322 ORTHO05D007716 2.9e-75 285.8 216 61.6
CARHR092240 Cardamine hirsuta HOM05D006322 ORTHO05D007716 3.8e-75 285.4 216 60.2
A03p40000 Brassica napus HOM05D006322 ORTHO05D007716 5.0e-75 285.0 216 61.1
AT3G16990 Arabidopsis thaliana HOM05D006322 ORTHO05D007716 6.5e-75 284.6 216 60.2
HPP92_001241 Vanilla planifolia HOM05D006322 ORTHO05D007716 1.5e-74 283.5 220 60.9
Carub.0003s1674 Capsella rubella HOM05D006322 ORTHO05D007716 2.5e-74 282.7 213 60.6
Aa31LG8G4030 Aethionema arabicum HOM05D006322 ORTHO05D007716 3.2e-74 282.3 226 57.5
AL3G29970 Arabidopsis lyrata HOM05D006322 ORTHO05D007716 3.2e-74 282.3 216 59.7
Os03g0306900 Oryza sativa ssp. japonica HOM05D006322 ORTHO05D007716 5.5e-74 281.6 217 59.0
Rhsim04G0234900 Rhododendron simsii HOM05D006322 ORTHO05D007716 7.2e-74 281.2 209 62.2
Zm00001eb396140 Zea mays HOM05D006322 ORTHO05D007716 1.2e-73 280.4 225 57.8
ATR0796G257 Amborella trichopoda HOM05D006322 ORTHO05D007716 4.7e-73 278.5 222 59.0
Sp3g15210 Schrenkiella parvula HOM05D006322 ORTHO05D007716 8.0e-73 277.7 213 59.2
CsaV3_6G022370 Cucumis sativus L. HOM05D006322 ORTHO05D007716 1.3e-70 270.4 216 56.9
ClCG06G004620 Citrullus lanatus HOM05D006322 ORTHO05D007716 2.8e-70 269.2 217 57.6
Sed0017771 Sechium edule HOM05D006322 ORTHO05D007716 2.8e-70 269.2 223 56.5
MELO3C021273.2 Cucumis melo HOM05D006322 ORTHO05D007716 8.3e-70 267.7 216 56.9
SEGI_24166 Sequoiadendron giganteum HOM05D006322 ORTHO05D007716 1.8e-69 266.5 217 56.2
FAN12G2263 Fragaria x ananassa HOM05D006322 ORTHO05D007716 2.4e-69 266.2 198 60.6
BcaB04g18918 Brassica carinata HOM05D006322 ORTHO05D007716 5.5e-66 255.0 216 56.0
SHI00180 Sapria himalayana HOM05D006322 ORTHO05D007716 2.8e-65 252.7 253 46.6
CAN.G135.71 Capsicum annuum HOM05D006322 ORTHO05D007716 1.0e-64 250.8 176 67.6
DCAR_030477 Daucus carota HOM05D006322 ORTHO05D007716 1.4e-64 250.4 215 54.4
AUR62041396 Chenopodium quinoa HOM05D006322 ORTHO05D007716 1.7e-62 243.4 177 61.6
Ah.13g071980 Amaranthus hybridus HOM05D006322 ORTHO05D007716 2.0e-60 236.5 205 57.1
AUR62016124 Chenopodium quinoa HOM05D006322 ORTHO05D007716 3.5e-60 235.7 176 60.8
FvH4_4g19550 Fragaria vesca HOM05D006322 ORTHO05D007716 7.3e-58 228.0 181 58.0
Peaxi162Scf00244g00510 Petunia axillaris HOM05D006322 ORTHO05D007716 6.1e-57 224.9 236 47.0
SMO116G0484 Selaginella moellendorffii HOM05D006322 ORTHO05D007716 6.1e-57 224.9 212 49.1
THA.LOC104802603 Tarenaya hassleriana HOM05D006322 ORTHO05D007716 8.0e-57 224.6 176 58.0
AagrBONN_evm.TU.Sc2ySwM_117.1930 Anthoceros agrestis HOM05D006322 ORTHO05D007716 8.9e-56 221.1 214 46.7
TAR362G0340 Trochodendron aralioides HOM05D006322 ORTHO05D007716 2.6e-55 219.5 216 50.9
Mapoly0003s0261 Marchantia polymorpha HOM05D006322 ORTHO05D007716 7.5e-55 218.0 213 44.1
Actinidia27045 Actinidia chinensis HOM05D006322 ORTHO05D007716 2.9e-54 216.1 150 67.3
EL10Ac7g16563 Beta vulgaris HOM05D006322 ORTHO05D007716 1.4e-53 213.8 159 61.0
Pp3c10_15580 Physcomitrium patens HOM05D006322 ORTHO05D007716 5.0e-51 205.3 212 45.3
TPR.G20694 Trifolium pratense HOM05D006322 ORTHO05D007716 3.4e-47 192.6 160 55.6
Solyc11g007560.2 Solanum lycopersicum HOM05D006322 ORTHO05D007716 9.8e-47 191.0 215 42.8
CAN.G135.72 Capsicum annuum HOM05D006322 ORTHO05D007716 2.9e-46 189.5 236 42.8
Lalb_Chr20g0120881 Lupinus albus HOM05D006322 ORTHO05D007716 3.0e-43 179.5 136 57.4
Nitab4.5_0001807g0070 Nicotiana tabacum HOM05D006322 ORTHO05D007716 3.0e-43 179.5 203 44.8
BcaB04g18915 Brassica carinata HOM05D001503 ORTHO05D003820 6.6e-43 178.3 178 51.1
PGSC0003DMG400040588 Solanum tuberosum HOM05D006322 ORTHO05D007716 2.8e-33 146.4 161 43.5
Actinidia15599 Actinidia chinensis HOM05D006322 ORTHO05D007716 8.1e-33 144.8 114 62.3
CBR_g45493 Chara braunii HOM05D006322 ORTHO05D007716 9.9e-31 137.9 224 32.1
Atru.chr4.3023 Acer truncatum HOM05D006322 ORTHO05D007716 1.9e-26 123.6 82 67.1
EL10Ac9g22265 Beta vulgaris HOM05D006322 ORTHO05D007716 2.4e-24 116.7 98 51.0
Glyma.07G240701 Glycine max HOM05D006322 ORTHO05D007716 2.0e-23 113.6 113 49.6
Cre09.g407600 Chlamydomonas reinhardtii HOM05D006322 ORTHO05D007716 3.9e-19 99.4 222 28.8
PSO782G2289 Papaver somniferum HOM05D000256 ORTHO05D000119 6.4e-14 82.0 46 78.3
CBR_g56708 Chara braunii HOM05D009436 ORTHO05D000048 4.2e-13 79.3 123 34.1
Atru.chr4.2979 Acer truncatum HOM05D006322 ORTHO05D007716 5.1e-11 72.4 43 72.1
Lalb_Chr20g0120891 Lupinus albus HOM05D006322 ORTHO05D007716 1.4e-08 64.3 41 63.4
BcaB04g18920 Brassica carinata HOM05D006322 ORTHO05D007716 3.1e-08 63.2 68 51.5
EL10Ac1g02106 Beta vulgaris HOM05D006322 ORTHO05D007716 6.9e-08 62.0 57 50.9
CANSAT54G0480 Cannabis sativa HOM05D006322 ORTHO05D007716 1.0e-06 58.2 91 38.5


User provided reference genes

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