Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO357G0329 Papaver somniferum HOM05D003465 ORTHO05D004034 6.4e-99 364.0 174 100.0
PSO017G2240 Papaver somniferum HOM05D003465 ORTHO05D004034 1.6e-89 332.8 172 92.4
PSO017G6777 Papaver somniferum HOM05D003465 ORTHO05D004034 1.5e-87 326.2 179 89.4
PSO478G1926 Papaver somniferum HOM05D003465 ORTHO05D004034 1.1e-71 273.5 139 93.5
PSO017G1556 Papaver somniferum HOM05D003465 ORTHO05D004034 3.3e-71 271.9 138 93.5
PSO339G2242 Papaver somniferum HOM05D003465 ORTHO05D004034 5.3e-69 264.6 139 89.9
PSO675G3714 Papaver somniferum HOM05D003465 ORTHO05D004034 5.9e-68 261.2 139 87.8
PSO339G3128 Papaver somniferum HOM05D003465 ORTHO05D004034 7.6e-68 260.8 138 90.6
PSO541G4994 Papaver somniferum HOM05D003465 ORTHO05D004034 2.5e-66 255.8 139 86.3
Nn1g04851 Nelumbo nucifera HOM05D003465 ORTHO05D004034 1.1e-50 203.8 140 69.3
Ah.01g006670 Amaranthus hybridus HOM05D003465 ORTHO05D004034 8.0e-49 197.6 135 70.4
TAR625G0342 Trochodendron aralioides HOM05D003465 ORTHO05D004034 1.0e-48 197.2 140 69.3
CiPaw.05G007600 Carya illinoinensis HOM05D003465 ORTHO05D004034 5.2e-48 194.9 140 66.4
VMungo0251G1706 Vigna mungo HOM05D003465 ORTHO05D004034 5.2e-48 194.9 136 69.1
AUR62016610 Chenopodium quinoa HOM05D003465 ORTHO05D004034 6.7e-48 194.5 136 68.4
EL10Ac9g21840 Beta vulgaris HOM05D003465 ORTHO05D004034 8.8e-48 194.1 136 67.6
AUR62011449 Chenopodium quinoa HOM05D003465 ORTHO05D004034 8.8e-48 194.1 136 68.4
Hma1.2p1_0474F.1_g160420 Hydrangea macrophylla HOM05D003465 ORTHO05D004034 1.5e-47 193.4 136 68.4
Glyma.02G131900 Glycine max HOM05D003465 ORTHO05D004034 4.4e-47 191.8 137 68.6
Phvul.003G292000 Phaseolus vulgaris HOM05D003465 ORTHO05D004034 4.4e-47 191.8 140 65.0
PGR142G0601 Punica granatum HOM05D003465 ORTHO05D004034 4.4e-47 191.8 143 65.0
arahy.Tifrunner.gnm1.ann1.5RT47R Arachis hypogaea HOM05D003465 ORTHO05D004034 5.7e-47 191.4 136 66.2
arahy.Tifrunner.gnm1.ann1.PPSU1J Arachis hypogaea HOM05D003465 ORTHO05D004034 5.7e-47 191.4 136 66.2
Dinv42161 Davidia involucrata HOM05D003465 ORTHO05D004034 5.7e-47 191.4 136 67.6
Hund06174 Selenicereus undatus HOM05D003465 ORTHO05D004034 5.7e-47 191.4 136 66.9
TWI31G0519 Tripterygium wilfordii HOM05D003465 ORTHO05D004034 5.7e-47 191.4 154 61.0
Ca_18690_v3 Cicer arietinum L. HOM05D003465 ORTHO05D004034 7.4e-47 191.0 140 66.4
Glyma.07G212900 Glycine max HOM05D003465 ORTHO05D004034 7.4e-47 191.0 136 67.6
Sed0008599 Sechium edule HOM05D003465 ORTHO05D004034 7.4e-47 191.0 140 66.4
Ciclev10028212m.g Citrus clementina HOM05D003465 ORTHO05D004034 1.3e-46 190.3 136 66.9
Eucgr.I01147 Eucalyptus grandis HOM05D003465 ORTHO05D004034 1.3e-46 190.3 140 65.0
RcHm_v2.0_Chr6g0257471 Rosa chinensis HOM05D003465 ORTHO05D004034 1.3e-46 190.3 143 65.0
TAR381G0440 Trochodendron aralioides HOM05D003465 ORTHO05D004034 1.7e-46 189.9 140 67.1
Cc02_g18830 Coffea canephora HOM05D003465 ORTHO05D004034 2.8e-46 189.1 136 66.9
ECA236G3626 Erigeron canadensis HOM05D004900 ORTHO05D006392 4.8e-46 188.3 136 67.6
FvH4_2g05930 Fragaria vesca HOM05D003465 ORTHO05D004034 4.8e-46 188.3 140 64.3
FAN15G0414 Fragaria x ananassa HOM05D003465 ORTHO05D004034 4.8e-46 188.3 140 64.3
Medtr4g086010 Medicago truncatula HOM05D003465 ORTHO05D004034 4.8e-46 188.3 140 64.3
Lsat_1_v5_gn_7_86701 Lactuca sativa HOM05D003465 ORTHO05D004034 6.3e-46 188.0 136 66.2
ClCG02G005960 Citrullus lanatus HOM05D003465 ORTHO05D004034 1.1e-45 187.2 140 65.0
FAN20G2338 Fragaria x ananassa HOM05D003465 ORTHO05D004034 1.1e-45 187.2 140 63.6
Lj4g0026387 Lotus japonicus HOM05D003465 ORTHO05D004034 1.1e-45 187.2 136 66.2
Cpa.g.sc62.7 Carica papaya HOM05D003465 ORTHO05D004034 1.4e-45 186.8 136 65.4
Zm00001eb176710 Zea mays HOM05D003465 ORTHO05D004034 1.8e-45 186.4 137 65.7
CANSAT25G3338 Cannabis sativa HOM05D003465 ORTHO05D004034 3.1e-45 185.7 136 64.7
CANSAT25G3355 Cannabis sativa HOM05D003465 ORTHO05D004034 3.1e-45 185.7 136 64.7
CsaV3_7G008560 Cucumis sativus L. HOM05D003465 ORTHO05D004034 3.1e-45 185.7 140 65.0
Os08g0472600 Oryza sativa ssp. japonica HOM05D003465 ORTHO05D004034 3.1e-45 185.7 137 65.7
Psat7g125480 Pisum sativum HOM05D003465 ORTHO05D004034 3.1e-45 185.7 140 63.6
TPR.G25433 Trifolium pratense HOM05D003465 ORTHO05D004034 3.1e-45 185.7 138 66.7
Aqoxy6G01316 Aquilegia oxysepala HOM05D003465 ORTHO05D004034 4.1e-45 185.3 143 65.0
MD10G1094900 Malus domestica HOM05D003465 ORTHO05D004034 4.1e-45 185.3 140 62.9
ATR0009G025 Amborella trichopoda HOM05D003465 ORTHO05D004034 5.3e-45 184.9 136 64.7
MBI03_g13465_MAGBIO Magnolia biondii HOM05D003465 ORTHO05D004034 5.3e-45 184.9 140 61.4
unitig_744.g24234 Utricularia gibba HOM05D003465 ORTHO05D004034 5.3e-45 184.9 138 64.5
QL11p035314 Quercus lobata HOM05D003465 ORTHO05D004034 7.0e-45 184.5 140 63.6
Nitab4.5_0007480g0040 Nicotiana tabacum HOM05D003465 ORTHO05D004034 9.1e-45 184.1 139 62.6
TWI79G0501 Tripterygium wilfordii HOM05D003465 ORTHO05D004034 9.1e-45 184.1 143 63.6
Haze_10093 Corylus avellana HOM05D003465 ORTHO05D004034 1.2e-44 183.7 136 65.4
Duzib132G0231 Durio zibethinus HOM05D003465 ORTHO05D004034 1.2e-44 183.7 135 65.9
Oeu010591.2 Olea europaea HOM05D003465 ORTHO05D004034 1.2e-44 183.7 136 66.2
vmacro19503 Vaccinium macrocarpon HOM05D003465 ORTHO05D004034 1.2e-44 183.7 138 65.9
Cfa004534 Carpinus fangiana HOM05D003465 ORTHO05D004034 1.6e-44 183.3 140 64.3
Dinv15715 Davidia involucrata HOM05D003465 ORTHO05D004034 1.6e-44 183.3 143 64.3
Gohir.A13G040700 Gossypium hirsutum HOM05D003465 ORTHO05D004034 1.6e-44 183.3 143 63.6
Lj5A209T84 Lonicera japonica HOM05D003465 ORTHO05D004034 1.6e-44 183.3 136 66.9
Sabra09G0077300 Salix brachista HOM05D003465 ORTHO05D004034 1.6e-44 183.3 136 64.7
Nitab4.5_0002543g0080 Nicotiana tabacum HOM05D003465 ORTHO05D004034 2.6e-44 182.6 136 62.5
HanXRQChr04g0128181 Helianthus annuus HOM05D003465 ORTHO05D004034 3.5e-44 182.2 136 65.4
Lalb_Chr16g0384751 Lupinus albus HOM05D003465 ORTHO05D004034 4.5e-44 181.8 146 59.6
Actinidia27958 Actinidia chinensis HOM05D003465 ORTHO05D004034 5.9e-44 181.4 136 66.9
DCAR_022021 Daucus carota HOM05D003465 ORTHO05D004034 5.9e-44 181.4 140 63.6
Gohir.D12G024600 Gossypium hirsutum HOM05D003465 ORTHO05D004034 5.9e-44 181.4 143 62.9
SEGI_41455 Sequoiadendron giganteum HOM05D003465 ORTHO05D004034 5.9e-44 181.4 138 60.9
COL.COLO4_32649 Corchorus olitorius HOM05D003465 ORTHO05D004034 7.7e-44 181.0 143 62.9
Potri.009G101500 Populus trichocarpa HOM05D003465 ORTHO05D004034 7.7e-44 181.0 136 64.7
Sc18g0004110 Simmondsia chinensis HOM05D003465 ORTHO05D004034 7.7e-44 181.0 136 64.7
Migut.B00352 Erythranthe guttata HOM05D003465 ORTHO05D004034 1.0e-43 180.6 154 59.7
CDE08G1667 Ceratophyllum demersum HOM05D003465 ORTHO05D004034 1.3e-43 180.3 143 62.9
Carub.0001s3892 Capsella rubella HOM05D003465 ORTHO05D004034 2.2e-43 179.5 153 60.1
Duzib052G0281 Durio zibethinus HOM05D003465 ORTHO05D004034 2.2e-43 179.5 142 62.0
Gohir.A12G024000 Gossypium hirsutum HOM05D003465 ORTHO05D004034 2.2e-43 179.5 143 62.2
Gorai.008G024900 Gossypium raimondii HOM05D003465 ORTHO05D004034 2.2e-43 179.5 143 62.2
Gorai.013G044300 Gossypium raimondii HOM05D003465 ORTHO05D004034 2.2e-43 179.5 143 62.9
Lalb_Chr05g0219201 Lupinus albus HOM05D003465 ORTHO05D004034 2.2e-43 179.5 138 63.0
CSS0040219 Camellia sinensis var. sinensis HOM05D003465 ORTHO05D004034 2.9e-43 179.1 136 63.2
Nitab4.5_0003080g0100 Nicotiana tabacum HOM05D003465 ORTHO05D004034 2.9e-43 179.1 138 63.8
Thecc.02G101300 Theobroma cacao HOM05D003465 ORTHO05D004034 2.9e-43 179.1 143 62.2
Lalb_Chr09g0328341 Lupinus albus HOM05D003465 ORTHO05D004034 3.8e-43 178.7 155 57.4
Nitab4.5_0003503g0030 Nicotiana tabacum HOM05D003465 ORTHO05D004034 3.8e-43 178.7 136 64.7
SGA_v2.0_scaffold90G27641 Striga asiatica HOM05D003465 ORTHO05D004034 3.8e-43 178.7 134 64.9
AT3G19280 Arabidopsis thaliana HOM05D003465 ORTHO05D004034 5.0e-43 178.3 159 58.5
Rhsim05G0084700 Rhododendron simsii HOM05D003465 ORTHO05D004034 6.5e-43 177.9 138 63.0
Solyc10g050230.3 Solanum lycopersicum HOM05D003465 ORTHO05D004034 6.5e-43 177.9 136 62.5
Sopen10g021410 Solanum pennellii HOM05D003465 ORTHO05D004034 6.5e-43 177.9 136 62.5
PGSC0003DMG401006223 Solanum tuberosum HOM05D003465 ORTHO05D004034 6.5e-43 177.9 136 61.8
GSVIVG01031736001 Vitis vinifera HOM05D003465 ORTHO05D004034 8.5e-43 177.6 140 61.4
CDE06G1279 Ceratophyllum demersum HOM05D003465 ORTHO05D004034 1.1e-42 177.2 143 62.2
Thhalv10011402m.g Eutrema salsugineum HOM05D003465 ORTHO05D004034 1.1e-42 177.2 136 63.2
Peaxi162Scf00016g01955 Petunia axillaris HOM05D003465 ORTHO05D004034 1.1e-42 177.2 137 62.8
CAN.G1707.1 Capsicum annuum HOM05D003465 ORTHO05D004034 3.2e-42 175.6 136 61.8
AT1G49710 Arabidopsis thaliana HOM05D003465 ORTHO05D004034 4.2e-42 175.3 154 57.8
ClCG05G010040 Citrullus lanatus HOM05D003465 ORTHO05D004034 5.5e-42 174.9 152 56.6
HanXRQChr16g0497621 Helianthus annuus HOM05D003465 ORTHO05D004034 5.5e-42 174.9 136 61.8
Sp1g36600 Schrenkiella parvula HOM05D003465 ORTHO05D004034 5.5e-42 174.9 138 62.3
AL1G57150 Arabidopsis lyrata HOM05D003465 ORTHO05D004034 7.2e-42 174.5 156 57.7
FAN27G0960 Fragaria x ananassa HOM05D003465 ORTHO05D004034 7.2e-42 174.5 165 54.5
MD05G1081600 Malus domestica HOM05D003465 ORTHO05D004034 9.4e-42 174.1 140 62.9
Peaxi162Scf00003g02335 Petunia axillaris HOM05D003465 ORTHO05D004034 2.1e-41 172.9 136 62.5
Solyc01g108110.4 Solanum lycopersicum HOM05D003465 ORTHO05D004034 2.7e-41 172.6 136 61.8
CAN.G1041.31 Capsicum annuum HOM05D003465 ORTHO05D004034 3.6e-41 172.2 131 62.6
AL3G32680 Arabidopsis lyrata HOM05D003465 ORTHO05D004034 4.7e-41 171.8 138 61.6
BcaC07g37019 Brassica carinata HOM05D003465 ORTHO05D004034 4.7e-41 171.8 138 61.6
C08p03870 Brassica napus HOM05D003465 ORTHO05D004034 4.7e-41 171.8 138 61.6
BolC8t47184H Brassica oleracea HOM05D003465 ORTHO05D004034 4.7e-41 171.8 138 61.6
A08p03730 Brassica napus HOM05D003465 ORTHO05D004034 6.1e-41 171.4 138 61.6
BraA08t32401Z Brassica rapa HOM05D003465 ORTHO05D004034 6.1e-41 171.4 138 61.6
BcaC05g28503 Brassica carinata HOM05D003465 ORTHO05D004034 1.0e-40 170.6 137 62.0
A05p30320 Brassica napus HOM05D003465 ORTHO05D004034 1.0e-40 170.6 137 62.0
BolC5t33305H Brassica oleracea HOM05D003465 ORTHO05D004034 1.0e-40 170.6 137 62.0
BraA05t21870Z Brassica rapa HOM05D003465 ORTHO05D004034 1.0e-40 170.6 137 62.0
Aa31LG10G4340 Aethionema arabicum HOM05D003465 ORTHO05D004034 1.4e-40 170.2 150 56.7
Sopen01g050340 Solanum pennellii HOM05D003465 ORTHO05D004034 1.4e-40 170.2 136 61.0
BcaB07g33651 Brassica carinata HOM05D003465 ORTHO05D004034 1.8e-40 169.9 142 61.3
C05p45870 Brassica napus HOM05D003465 ORTHO05D004034 3.0e-40 169.1 137 61.3
BcaC08g43160 Brassica carinata HOM05D003465 ORTHO05D004034 4.0e-40 168.7 140 60.0
C06p04480 Brassica napus HOM05D003465 ORTHO05D004034 4.0e-40 168.7 140 60.0
BolC6t35578H Brassica oleracea HOM05D003465 ORTHO05D004034 4.0e-40 168.7 140 60.0
Carub.0003s1911 Capsella rubella HOM05D003465 ORTHO05D004034 4.0e-40 168.7 138 60.1
THA.LOC104798796 Tarenaya hassleriana HOM05D003465 ORTHO05D004034 5.2e-40 168.3 136 61.0
Lsat_1_v5_gn_5_112540 Lactuca sativa HOM05D003465 ORTHO05D004034 6.7e-40 167.9 140 59.3
THA.LOC104803455 Tarenaya hassleriana HOM05D003465 ORTHO05D004034 1.2e-39 167.2 156 58.3
CsaV3_3G018500 Cucumis sativus L. HOM05D003465 ORTHO05D004034 2.0e-39 166.4 132 60.6
BcaB04g17304 Brassica carinata HOM05D003465 ORTHO05D004034 2.6e-39 166.0 138 59.4
MELO3C019516.2 Cucumis melo HOM05D003465 ORTHO05D004034 3.3e-39 165.6 152 55.3
Hund00338 Selenicereus undatus HOM05D003465 ORTHO05D004034 3.3e-39 165.6 132 64.4
PGSC0003DMG400025789 Solanum tuberosum HOM05D003465 ORTHO05D004034 4.4e-39 165.2 134 59.7
A06p03720 Brassica napus HOM05D003465 ORTHO05D004034 5.7e-39 164.9 140 58.6
BraA06t23577Z Brassica rapa HOM05D003465 ORTHO05D004034 5.7e-39 164.9 140 58.6
SHI05356 Sapria himalayana HOM05D003465 ORTHO05D004034 7.5e-39 164.5 138 58.7
Sp3g17360 Schrenkiella parvula HOM05D003465 ORTHO05D004034 2.8e-38 162.5 138 58.0
Sed0016548 Sechium edule HOM05D003465 ORTHO05D004034 3.7e-38 162.2 152 53.9
Lj9C358T1 Lonicera japonica HOM05D003465 ORTHO05D004034 2.4e-37 159.5 136 58.1
Lsat_1_v5_gn_4_10380 Lactuca sativa HOM05D003465 ORTHO05D004034 7.0e-37 157.9 136 56.6
Nn5g30308 Nelumbo nucifera HOM05D003465 ORTHO05D004034 3.5e-36 155.6 140 55.7
Gorai.002G008200 Gossypium raimondii HOM05D003465 ORTHO05D004034 7.7e-36 154.5 151 51.7
Gohir.D01G007200 Gossypium hirsutum HOM05D003465 ORTHO05D004034 3.8e-35 152.1 151 51.0
DCAR_019244 Daucus carota HOM05D003465 ORTHO05D004034 8.5e-35 151.0 157 49.0
Gohir.A01G007100 Gossypium hirsutum HOM05D003465 ORTHO05D004034 5.5e-34 148.3 133 57.9
Actinidia00437 Actinidia chinensis HOM05D003465 ORTHO05D004034 4.7e-33 145.2 96 71.9
AagrBONN_evm.TU.Sc2ySwM_228.1554 Anthoceros agrestis HOM05D003465 ORTHO05D004034 1.4e-32 143.7 140 51.4
Mapoly0164s0009 Marchantia polymorpha HOM05D003465 ORTHO05D004034 4.0e-32 142.1 145 49.7
Zm00001eb026360 Zea mays HOM05D003465 ORTHO05D004034 2.6e-31 139.4 101 63.4
Zm00001eb026370 Zea mays HOM05D003465 ORTHO05D004034 5.7e-31 138.3 103 62.1
DCAR_029059 Daucus carota HOM05D003465 ORTHO05D004034 6.3e-30 134.8 145 49.7
Pp3c11_22030 Physcomitrium patens HOM05D003465 ORTHO05D004034 1.4e-29 133.7 153 47.1
SMO367G1219 Selaginella moellendorffii HOM05D003465 ORTHO05D004034 1.4e-29 133.7 151 47.7
Atru.chr5.2693 Acer truncatum HOM05D003465 ORTHO05D004034 1.8e-29 133.3 79 77.2
MELO3C018453.2 Cucumis melo HOM05D003465 ORTHO05D004034 2.0e-28 129.8 79 75.9
CARHR039740 Cardamine hirsuta HOM05D003465 ORTHO05D004034 4.5e-28 128.6 79 72.2
SalBow6G3816 Salvia bowleyana HOM05D003465 ORTHO05D004034 5.9e-28 128.3 79 73.4
Prupe.8G126200 Prunus persica HOM05D003465 ORTHO05D004034 1.3e-27 127.1 79 72.2
CARHR094680 Cardamine hirsuta HOM05D003465 ORTHO05D004034 6.5e-27 124.8 79 72.2
Gohir.D13G039400 Gossypium hirsutum HOM05D003465 ORTHO05D004034 2.5e-26 122.9 73 78.1
HPP92_013117 Vanilla planifolia HOM05D003465 ORTHO05D004034 2.8e-25 119.4 78 69.2
CBR_g39363 Chara braunii HOM05D003465 ORTHO05D004034 6.1e-25 118.2 146 45.9
Zm00001eb038040 Zea mays HOM05D003465 ORTHO05D004034 6.1e-25 118.2 73 74.0
Oeu025579.1 Olea europaea HOM05D003465 ORTHO05D004034 4.0e-24 115.5 136 45.6
CBR_g30510 Chara braunii HOM05D003465 ORTHO05D004034 7.5e-23 111.3 146 44.5
AL1G57120 Arabidopsis lyrata HOM05D003465 ORTHO05D004034 6.3e-22 108.2 137 46.0
Psat1g011840 Pisum sativum HOM05D003465 ORTHO05D004034 1.9e-18 96.7 81 59.3
CSS0046899 Camellia sinensis var. sinensis HOM05D003465 ORTHO05D004034 2.1e-17 93.2 137 42.3
Manes.07G078000 Manihot esculenta HOM05D003465 ORTHO05D004034 1.8e-13 80.1 52 71.2
Thhalv10022257m.g Eutrema salsugineum HOM05D003465 ORTHO05D004034 9.5e-10 67.8 79 49.4


User provided reference genes

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