Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 3.8e-120 434.9 226 100.0
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 8.9e-117 423.7 226 96.5
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 2.5e-103 379.0 226 87.6
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 1.8e-101 372.9 226 87.2
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 2.5e-95 352.4 222 80.2
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 3.6e-94 348.6 226 77.9
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 1.3e-91 340.1 227 76.2
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 1.3e-91 340.1 223 78.5
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 3.2e-90 335.5 225 74.2
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 1.7e-88 329.7 226 74.3
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 6.6e-88 327.8 224 73.7
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 8.6e-88 327.4 224 73.7
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 1.1e-87 327.0 229 74.7
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 1.1e-87 327.0 224 73.2
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 1.9e-87 326.2 222 73.4
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 1.9e-87 326.2 226 72.6
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 5.6e-87 324.7 222 73.0
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 2.8e-86 322.4 227 70.9
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 4.7e-86 321.6 227 71.4
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 2.4e-85 319.3 222 71.6
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 4.0e-85 318.5 227 71.4
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 5.2e-85 318.2 227 70.0
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 6.8e-85 317.8 227 69.6
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 4.4e-84 315.1 212 75.5
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 7.6e-84 314.3 223 71.7
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.3e-83 313.5 227 69.6
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.3e-83 313.5 223 71.3
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.2e-83 312.8 228 70.6
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 3.8e-83 312.0 224 71.4
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 3.8e-83 312.0 228 70.6
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 6.4e-83 311.2 227 70.9
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 1.1e-82 310.5 225 70.7
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.4e-82 310.1 219 71.2
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.4e-82 309.3 225 70.2
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 3.2e-82 308.9 228 69.7
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 7.1e-82 307.8 226 68.6
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 9.3e-82 307.4 228 68.9
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.6e-81 306.6 226 70.4
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 3.5e-81 305.4 227 69.2
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 7.8e-81 304.3 221 68.3
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 6.6e-80 301.2 219 70.8
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 2.5e-79 299.3 224 67.9
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 2.8e-78 295.8 219 67.6
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 1.4e-77 293.5 221 68.8
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 1.4e-77 293.5 202 72.8
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 5.8e-76 288.1 220 70.0
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 1.3e-75 287.0 219 66.2
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 2.9e-75 285.8 235 61.7
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 6.4e-75 284.6 226 63.7
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 6.4e-75 284.6 215 67.0
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 1.1e-74 283.9 220 69.1
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 9.3e-74 280.8 222 65.3
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 4.6e-73 278.5 230 61.3
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 6.0e-73 278.1 232 61.2
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 7.9e-73 277.7 239 59.8
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 1.0e-72 277.3 228 64.9
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 1.7e-72 276.6 232 60.3
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.3e-72 276.2 239 58.6
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 2.3e-72 276.2 239 59.0
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 3.0e-72 275.8 233 60.5
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 3.9e-72 275.4 237 59.9
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 3.9e-72 275.4 223 65.9
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 5.1e-72 275.0 227 65.2
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 6.6e-72 274.6 222 60.8
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 1.5e-71 273.5 224 66.1
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 2.5e-71 272.7 222 60.4
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 2.5e-71 272.7 231 59.7
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 3.3e-71 272.3 231 60.6
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 5.6e-71 271.6 236 59.3
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 7.3e-71 271.2 227 60.4
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 9.6e-71 270.8 222 59.9
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 9.6e-71 270.8 222 59.9
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 1.3e-70 270.4 227 66.1
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 2.8e-70 269.2 222 66.7
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 3.6e-70 268.9 225 64.0
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 4.8e-70 268.5 224 59.4
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 8.1e-70 267.7 222 64.0
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 8.1e-70 267.7 231 60.6
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 1.4e-69 266.9 222 64.4
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 1.8e-69 266.5 222 59.0
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 2.4e-69 266.2 222 59.0
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 2.4e-69 266.2 216 65.3
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 3.1e-69 265.8 225 63.1
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 4.0e-69 265.4 222 59.0
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 5.3e-69 265.0 223 60.1
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 9.0e-69 264.2 222 59.0
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 9.0e-69 264.2 221 58.8
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 1.5e-68 263.5 222 65.3
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 2.6e-68 262.7 224 59.4
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 2.6e-68 262.7 222 63.5
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 4.5e-68 261.9 224 61.2
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 5.8e-68 261.5 226 58.0
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 1.3e-67 260.4 219 63.0
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 3.8e-67 258.8 214 64.0
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 2.4e-66 256.1 225 57.8
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 5.5e-66 255.0 226 58.0
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 2.7e-65 252.7 277 51.3
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 3.5e-65 252.3 226 56.2
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 7.9e-65 251.1 258 53.9
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 1.8e-64 250.0 226 56.2
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 3.0e-64 249.2 219 60.7
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 6.7e-64 248.1 223 58.3
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 2.5e-63 246.1 226 54.9
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 2.5e-63 246.1 219 59.8
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 4.3e-63 245.4 224 59.8
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 9.6e-63 244.2 226 56.6
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 9.6e-63 244.2 228 55.3
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 1.6e-62 243.4 219 59.4
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 3.7e-62 242.3 229 54.1
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 3.1e-61 239.2 163 72.4
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 6.9e-61 238.0 175 70.3
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 1.0e-59 234.2 221 57.5
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 1.7e-59 233.4 214 57.9
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 2.2e-59 233.0 222 55.4
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 8.4e-59 231.1 174 67.2
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 3.5e-57 225.7 223 54.3
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 6.7e-56 221.5 244 47.1
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 8.7e-56 221.1 169 68.0
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 4.3e-55 218.8 161 70.8
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 2.1e-54 216.5 163 63.8
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 6.3e-54 214.9 159 69.8
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.4e-53 213.0 156 68.6
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 4.1e-53 212.2 241 46.5
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 9.3e-50 201.1 228 50.4
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 1.2e-49 200.7 154 70.1
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 8.2e-46 188.0 221 49.8
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 6.9e-45 184.9 145 61.4
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 3.2e-42 176.0 222 47.7
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 4.2e-42 175.6 124 73.4
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 9.4e-42 174.5 206 49.0
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.4e-37 159.8 187 46.0
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 3.1e-37 159.5 141 61.0
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 9.1e-37 157.9 193 44.6
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.0e-36 156.8 225 40.4
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 7.7e-36 154.8 223 39.5
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 5.0e-35 152.1 115 64.3
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 6.5e-35 151.8 126 65.9
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.9e-34 150.2 188 45.7
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 5.5e-34 148.7 114 64.9
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 7.2e-34 148.3 114 66.7
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.7e-33 146.4 145 54.5
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 6.1e-33 145.2 184 44.6
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 5.1e-32 142.1 235 40.4
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 2.6e-31 139.8 225 37.8
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 3.5e-28 129.4 221 33.5
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.3e-27 127.5 90 73.3
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 4.0e-24 115.9 181 39.2
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 4.4e-23 112.5 84 71.4
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 4.4e-23 112.5 84 71.4
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 2.2e-22 110.2 141 48.9
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 6.3e-22 108.6 196 42.9
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 1.8e-21 107.1 69 71.0
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 1.6e-20 104.0 147 43.5
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.2e-19 100.1 171 40.4
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 2.2e-19 100.1 120 42.5
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 4.2e-18 95.9 136 45.6
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 9.4e-18 94.7 97 51.5
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.2e-17 94.4 58 72.4
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 6.1e-17 92.0 68 69.1
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 4.0e-16 89.4 78 61.5
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 9.8e-15 84.7 94 51.1
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 9.8e-15 84.7 75 58.7
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 2.2e-14 83.6 53 73.6
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 3.7e-14 82.8 50 76.0
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.8e-13 80.5 79 51.9
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 1.8e-13 80.5 53 71.7
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 1.8e-13 80.5 53 71.7
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 2.4e-13 80.1 81 55.6
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 3.1e-13 79.7 91 46.2
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 2.0e-12 77.0 203 30.0
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 2.0e-12 77.0 203 30.0
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 2.9e-11 73.2 50 66.0
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 6.5e-11 72.0 83 53.0
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 8.5e-11 71.6 120 41.7
VMungo0720G0063 Vigna mungo HOM05D003667 ORTHO05D004397 1.6e-09 67.4 71 47.9
BNapus_Darmor_BZH_scaffold_271p00010 Brassica napus HOM05D003667 ORTHO05D004397 6.1e-09 65.5 192 28.6
HanXRQChr04g0115761 Helianthus annuus HOM05D003667 ORTHO05D004397 1.4e-08 64.3 52 61.5
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 3.0e-08 63.2 56 64.3
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 4.0e-08 62.8 78 46.2
MD05G1212000 Malus domestica HOM05D003667 ORTHO05D246792 2.8e-06 56.6 43 65.1


User provided reference genes

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