Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 0.0e+00 2025.4 1024 100.0
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 0.0e+00 1952.9 1026 96.3
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 4.1e-270 935.3 1028 50.1
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 4.0e-265 918.7 1028 49.7
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 4.9e-263 911.8 1031 48.4
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 1.8e-257 893.3 1029 48.2
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 3.7e-255 885.6 1036 47.4
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 6.4e-255 884.8 1033 47.0
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 8.3e-255 884.4 1032 47.5
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 1.1e-254 884.0 1031 47.9
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 1.2e-253 880.6 1022 47.7
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 1.6e-253 880.2 1030 47.5
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 2.0e-253 879.8 1033 47.6
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 6.0e-253 878.2 1015 48.1
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 7.8e-253 877.9 1024 47.7
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 3.9e-252 875.5 1036 47.2
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 3.3e-251 872.5 1031 47.8
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 5.6e-251 871.7 1030 47.1
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 2.3e-249 866.3 1033 46.4
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 2.3e-249 866.3 1032 46.8
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 6.8e-249 864.8 1014 47.4
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 3.7e-247 859.0 1032 46.8
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 8.3e-247 857.8 1014 47.2
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 1.1e-246 857.4 1034 47.3
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 3.2e-246 855.9 1003 47.0
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 4.1e-246 855.5 1030 46.4
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 2.7e-245 852.8 1031 46.9
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 6.0e-245 851.7 1032 46.3
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 1.3e-244 850.5 1018 46.1
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 5.6e-243 845.1 1017 45.8
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 2.1e-242 843.2 1018 45.4
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 2.8e-242 842.8 1098 45.0
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 2.8e-242 842.8 1034 45.3
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 3.6e-242 842.4 1019 45.7
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 4.7e-242 842.0 1031 45.6
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 8.1e-242 841.3 1019 45.9
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 5.2e-241 838.6 1025 45.7
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 6.8e-241 838.2 1018 45.7
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 2.0e-240 836.6 1033 46.2
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 2.6e-240 836.3 1032 45.2
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 3.4e-240 835.9 1018 45.6
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 5.8e-240 835.1 1018 45.3
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 7.5e-240 834.7 1031 44.8
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 9.9e-240 834.3 1010 47.3
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 2.2e-239 833.2 1018 45.7
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 2.2e-239 833.2 1079 45.3
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 4.9e-239 832.0 1018 45.4
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 4.9e-239 832.0 1018 45.4
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 2.4e-238 829.7 1030 45.3
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 2.4e-238 829.7 1032 46.0
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 2.1e-237 826.6 1031 44.3
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 2.1e-237 826.6 1036 44.8
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 2.7e-237 826.2 1032 45.6
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 3.5e-237 825.9 1034 44.7
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 6.0e-237 825.1 1038 45.4
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 2.3e-236 823.2 1031 44.2
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 3.0e-236 822.8 1031 44.3
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 1.1e-235 820.8 1034 45.2
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 9.5e-235 817.8 1020 45.4
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 4.7e-234 815.5 1039 44.9
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 1.4e-233 813.9 1035 44.4
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 1.8e-233 813.5 1035 45.9
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 5.2e-233 812.0 1028 44.2
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 2.6e-232 809.7 1027 44.4
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 5.8e-232 808.5 1029 44.9
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 2.9e-231 806.2 1037 44.2
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 6.4e-231 805.1 1023 45.8
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 8.4e-231 804.7 1026 44.2
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 3.2e-230 802.7 1030 45.1
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 5.4e-230 802.0 1024 44.7
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 1.6e-229 800.4 1034 46.0
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 1.6e-229 800.4 800 53.9
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 1.6e-229 800.4 1027 44.5
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 4.6e-229 798.9 1026 45.0
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 6.0e-229 798.5 1009 45.1
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 7.8e-229 798.1 1030 44.5
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 1.7e-228 797.0 1042 44.1
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 8.7e-228 794.7 1088 43.1
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 1.3e-226 790.8 1023 44.3
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 2.4e-225 786.6 1023 44.6
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 1.2e-224 784.3 1028 43.8
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 1.5e-224 783.9 1050 44.8
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 3.9e-220 769.2 1035 44.2
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 5.8e-216 755.4 782 51.2
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 1.9e-214 750.4 1034 43.2
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 1.3e-212 744.2 1020 42.8
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 6.2e-210 735.3 1031 41.8
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 8.2e-202 708.4 783 49.2
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 4.9e-199 699.1 1000 42.8
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 9.0e-193 678.3 677 51.8
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 2.9e-191 673.3 1008 39.2
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 8.8e-180 635.2 893 42.1
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 1.4e-172 611.3 586 53.8
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 1.8e-172 610.9 608 52.1
Sc12g0001970 Simmondsia chinensis HOM05D004875 ORTHO05D005598 3.4e-163 580.1 821 41.9
Ca_15009_v3 Cicer arietinum L. HOM05D004875 ORTHO05D005598 8.3e-162 575.5 780 43.1
Mapoly0170s0019 Marchantia polymorpha HOM05D004875 ORTHO05D005598 7.8e-144 515.8 1043 33.9
AagrBONN_evm.TU.Sc2ySwM_228.3164 Anthoceros agrestis HOM05D004875 ORTHO05D005598 4.4e-139 500.0 1064 33.2
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 1.4e-137 495.0 1024 34.8
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 2.5e-126 457.6 497 47.9
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 9.9e-123 445.7 497 46.7
Cpa.g.sc2.356 Carica papaya HOM05D004875 ORTHO05D005598 1.7e-122 444.9 585 45.3
Pp3c18_5510 Physcomitrium patens HOM05D004875 ORTHO05D005598 3.3e-118 430.6 1037 30.9
Cpa.g.sc2.355 Carica papaya HOM05D004875 ORTHO05D005598 4.9e-114 416.8 430 51.2
Atru.chr3.4118 Acer truncatum HOM05D004875 ORTHO05D005598 1.0e-111 409.1 446 48.4
Atru.chr3.4119 Acer truncatum HOM05D004875 ORTHO05D005598 1.3e-103 382.1 451 48.6
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.5e-102 378.6 517 42.6
Peaxi162Scf00055g00107 Petunia axillaris HOM05D004875 ORTHO05D005598 9.6e-102 375.9 533 43.0
CBR_g50477 Chara braunii HOM05D004875 ORTHO05D005598 2.0e-99 368.2 1085 27.7
Solyc09g057920.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 1.9e-97 361.7 533 42.2
Nitab4.5_0005130g0040 Nicotiana tabacum HOM05D004875 ORTHO05D005598 2.3e-95 354.8 565 38.8
SHI19214 Sapria himalayana HOM05D004875 ORTHO05D005598 1.2e-83 315.8 637 34.5
Oeu027574.2 Olea europaea HOM05D004875 ORTHO05D005598 1.7e-82 312.0 485 39.2
unitig_0.g437 Utricularia gibba HOM05D004875 ORTHO05D005598 5.5e-81 307.0 549 38.1
MELO3C027117.2 Cucumis melo HOM05D004875 ORTHO05D005598 8.2e-77 293.1 297 50.8
MELO3C025696.2 Cucumis melo HOM05D004875 ORTHO05D005598 6.5e-66 256.9 444 36.5
MELO3C025695.2 Cucumis melo HOM05D004875 ORTHO05D005598 3.7e-61 241.1 229 52.8
Sc12g0001960 Simmondsia chinensis HOM05D004875 ORTHO05D005598 7.2e-57 226.9 229 50.7
Oeu019275.2 Olea europaea HOM05D004875 ORTHO05D005598 2.3e-55 221.9 250 46.8
PSO541G6542 Papaver somniferum HOM05D004875 ORTHO05D005598 1.5e-54 219.2 418 36.6
PSO532G0016 Papaver somniferum HOM05D004875 ORTHO05D005598 1.0e-50 206.5 418 33.7
PSO541G1704 Papaver somniferum HOM05D004875 ORTHO05D005598 1.0e-50 206.5 418 34.0
PSO339G3761 Papaver somniferum HOM05D004875 ORTHO05D005598 4.4e-46 191.0 526 32.5
PSO170G5144 Papaver somniferum HOM05D004875 ORTHO05D005598 4.8e-45 187.6 511 32.7
PSO384G1619 Papaver somniferum HOM05D004875 ORTHO05D005598 5.9e-43 180.6 312 39.4
PSO541G5558 Papaver somniferum HOM05D004875 ORTHO05D005598 1.2e-38 166.4 434 32.7
PSO478G4214 Papaver somniferum HOM05D004875 ORTHO05D005598 4.9e-37 161.0 222 43.2
Nitab4.5_0000002g0020 Nicotiana tabacum HOM05D004875 ORTHO05D005598 7.0e-36 157.1 320 35.0
CAN.G3.43 Capsicum annuum HOM05D004875 ORTHO05D005598 7.7e-35 153.7 325 35.4
PRCOL_00002473 Prasinoderma coloniale HOM05D004875 ORTHO05D005598 1.0e-34 153.3 756 24.9
Nitab4.5_0005130g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 3.3e-33 148.3 323 34.7
Cre11.g475050 Chlamydomonas reinhardtii HOM05D004875 ORTHO05D005598 1.0e-31 143.3 737 25.1
C04p28250 Brassica napus HOM05D004875 ORTHO05D005598 2.3e-31 142.1 166 47.6
BolC4t24370H Brassica oleracea HOM05D004875 ORTHO05D005598 2.3e-31 142.1 166 47.6
unitig_0.g436 Utricularia gibba HOM05D004875 ORTHO05D005598 2.3e-31 142.1 243 39.9
PSO170G5101 Papaver somniferum HOM05D004875 ORTHO05D005598 5.0e-26 124.4 454 28.2
CAN.G3.44 Capsicum annuum HOM05D004875 ORTHO05D005598 1.5e-25 122.9 110 52.7
MCO11G770 Micromonas commoda HOM05D004875 ORTHO05D005598 5.6e-25 120.9 760 21.8
PSO170G3032 Papaver somniferum HOM05D004875 ORTHO05D005598 7.5e-22 110.5 194 39.2
BcaC02g10491 Brassica carinata HOM05D004875 ORTHO05D005598 8.3e-21 107.1 116 52.6
BcaC07g37054 Brassica carinata HOM05D004875 ORTHO05D005598 8.6e-18 97.1 121 49.6
SHI19217 Sapria himalayana HOM05D004875 ORTHO05D005598 8.6e-18 97.1 160 38.1
C01p15940 Brassica napus HOM05D004875 ORTHO05D005598 4.7e-16 91.3 69 58.0
SHI19215 Sapria himalayana HOM05D004875 ORTHO05D005598 8.9e-15 87.0 158 38.0
SHI19216 Sapria himalayana HOM05D004875 ORTHO05D005598 2.1e-11 75.9 76 50.0
BolC8t47222H Brassica oleracea HOM05D004875 ORTHO05D005598 1.7e-10 72.8 60 53.3
PSO782G3231 Papaver somniferum HOM05D023650 ORTHO05D026023 3.0e-10 72.0 72 48.6
BcaB03g16392 Brassica carinata HOM05D004875 ORTHO05D005598 7.3e-09 67.4 113 35.4
Lsat_1_v5_gn_9_14740 Lactuca sativa HOM05D000378 ORTHO05D005598 1.1e-07 63.5 119 30.3


User provided reference genes

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