Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO349G0250 Papaver somniferum HOM05D002238 ORTHO05D007272 1.5e-247 859.0 423 100.0
PSO017G3814 Papaver somniferum HOM05D002238 ORTHO05D007272 1.4e-224 782.7 421 92.4
TAR625G0243 Trochodendron aralioides HOM05D002238 ORTHO05D007272 3.6e-135 485.7 405 60.2
Nn2g11964 Nelumbo nucifera HOM05D002238 ORTHO05D007272 1.4e-131 473.8 406 57.9
Aqoxy3G03159 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 3.6e-127 459.1 421 55.3
Dinv30168 Davidia involucrata HOM05D002238 ORTHO05D007272 5.0e-121 438.7 428 53.5
COL.COLO4_00195 Corchorus olitorius HOM05D002238 ORTHO05D007272 4.7e-119 432.2 398 54.0
Duzib168G0728 Durio zibethinus HOM05D002238 ORTHO05D007272 2.3e-118 429.9 420 51.7
Lj8C25T21 Lonicera japonica HOM05D002238 ORTHO05D007272 3.9e-118 429.1 428 52.6
Ciclev10010344m.g Citrus clementina HOM05D002238 ORTHO05D007272 6.7e-118 428.3 420 52.6
MBI04_g24206_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D007272 8.8e-118 427.9 401 55.6
CiPaw.05G262300 Carya illinoinensis HOM05D002238 ORTHO05D007272 2.8e-116 422.9 397 52.9
Rhsim02G0195500 Rhododendron simsii HOM05D002238 ORTHO05D007272 2.8e-116 422.9 429 50.8
Haze_00046 Corylus avellana HOM05D002238 ORTHO05D007272 3.7e-116 422.5 400 52.5
MD08G1146200 Malus domestica HOM05D002238 ORTHO05D007272 6.3e-116 421.8 429 50.1
Rhsim09G0014000 Rhododendron simsii HOM05D002238 ORTHO05D007272 2.4e-115 419.9 427 50.8
CSS0032500 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D007272 3.1e-115 419.5 404 52.2
QL09p012798 Quercus lobata HOM05D002238 ORTHO05D007272 4.5e-114 415.6 405 51.4
RcHm_v2.0_Chr6g0298391 Rosa chinensis HOM05D002238 ORTHO05D007272 7.7e-114 414.8 400 52.5
Oeu034743.2 Olea europaea HOM05D002238 ORTHO05D007272 1.3e-113 414.1 429 50.1
FAN24G3345 Fragaria x ananassa HOM05D002238 ORTHO05D007272 5.0e-113 412.1 400 51.2
Rhsim02G0198300 Rhododendron simsii HOM05D002238 ORTHO05D007272 8.5e-113 411.4 429 49.7
Actinidia13250 Actinidia chinensis HOM05D002238 ORTHO05D007272 1.5e-112 410.6 394 54.1
Sc11g0007780 Simmondsia chinensis HOM05D002238 ORTHO05D007272 1.5e-112 410.6 403 51.6
FvH4_2g29530 Fragaria vesca HOM05D002238 ORTHO05D007272 1.9e-112 410.2 400 51.0
Manes.16G120100 Manihot esculenta HOM05D002238 ORTHO05D007272 1.9e-112 410.2 420 51.0
Eucgr.C01786 Eucalyptus grandis HOM05D002238 ORTHO05D007272 3.2e-112 409.5 399 52.1
Prupe.1G474900 Prunus persica HOM05D002238 ORTHO05D007272 3.2e-112 409.5 379 52.2
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 4.2e-112 409.1 384 53.6
Cc08_g00970 Coffea canephora HOM05D002238 ORTHO05D007272 5.5e-112 408.7 409 50.6
TWI32G0967 Tripterygium wilfordii HOM05D002238 ORTHO05D007272 2.1e-111 406.8 402 51.5
Gohir.A09G019700 Gossypium hirsutum HOM05D002238 ORTHO05D007272 2.7e-111 406.4 397 53.1
FAN20G0928 Fragaria x ananassa HOM05D002238 ORTHO05D007272 4.7e-111 405.6 400 50.8
FAN27G0629 Fragaria x ananassa HOM05D002238 ORTHO05D007272 1.0e-110 404.4 400 50.5
CANSAT54G2252 Cannabis sativa HOM05D002238 ORTHO05D007272 1.8e-110 403.7 416 48.3
PGSC0003DMG400020787 Solanum tuberosum HOM05D002238 ORTHO05D007272 4.4e-109 399.1 403 49.6
Gohir.D09G019000 Gossypium hirsutum HOM05D002238 ORTHO05D007272 5.7e-109 398.7 397 52.1
Nitab4.5_0004440g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.3e-108 397.5 403 50.1
Potri.006G251400 Populus trichocarpa HOM05D002238 ORTHO05D007272 1.3e-108 397.5 401 49.9
Cpa.g.sc533.2 Carica papaya HOM05D002238 ORTHO05D007272 1.7e-108 397.1 398 51.8
Gohir.1Z049673 Gossypium hirsutum HOM05D002238 ORTHO05D007272 2.8e-108 396.4 397 51.9
Peaxi162Scf00327g00039 Petunia axillaris HOM05D002238 ORTHO05D007272 2.8e-108 396.4 405 50.4
AUR62040710 Chenopodium quinoa HOM05D002238 ORTHO05D007272 4.8e-108 395.6 377 53.1
AUR62012126 Chenopodium quinoa HOM05D002238 ORTHO05D007272 6.3e-108 395.2 377 52.8
Gorai.006G022700 Gossypium raimondii HOM05D002238 ORTHO05D007272 7.0e-107 391.7 397 51.9
Peaxi162Scf00108g00063 Petunia axillaris HOM05D002238 ORTHO05D007272 4.5e-106 389.0 413 48.7
Sopen08g016790 Solanum pennellii HOM05D002238 ORTHO05D007272 5.9e-106 388.7 403 49.1
PGR042G2797 Punica granatum HOM05D002238 ORTHO05D007272 1.0e-105 387.9 425 48.2
Solyc08g061450.3 Solanum lycopersicum HOM05D002238 ORTHO05D007272 1.3e-105 387.5 403 48.6
Ah.16g102520 Amaranthus hybridus HOM05D002238 ORTHO05D007272 1.1e-104 384.4 422 47.2
Nitab4.5_0009247g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.5e-104 384.0 393 51.4
EL10Ac2g04715 Beta vulgaris HOM05D002238 ORTHO05D007272 2.5e-104 383.3 377 51.2
DCAR_006233 Daucus carota HOM05D002238 ORTHO05D007272 4.2e-104 382.5 374 52.1
Lj5g0011751 Lotus japonicus HOM05D002238 ORTHO05D007272 7.2e-104 381.7 377 50.4
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 1.0e-102 377.9 376 49.2
Ca_12577_v3 Cicer arietinum L. HOM05D002238 ORTHO05D007272 1.8e-102 377.1 416 46.4
Glyma.05G173000 Glycine max HOM05D002238 ORTHO05D007272 2.0e-101 373.6 377 49.9
Lalb_Chr25g0279781 Lupinus albus HOM05D002238 ORTHO05D007272 2.0e-101 373.6 377 49.1
Peaxi162Scf00002g00372 Petunia axillaris HOM05D002238 ORTHO05D003453 1.3e-100 370.9 386 51.0
VMungo1215G1712 Vigna mungo HOM05D002238 ORTHO05D007272 8.3e-100 368.2 379 49.6
Sed0000756 Sechium edule HOM05D002238 ORTHO05D007272 1.4e-99 367.5 381 50.1
Sabra06G0196500 Salix brachista HOM05D002238 ORTHO05D007272 5.4e-99 365.5 429 45.9
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 5.4e-99 365.5 373 48.5
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 7.0e-99 365.2 368 50.0
ClCG05G017070 Citrullus lanatus HOM05D002238 ORTHO05D007272 7.0e-99 365.2 418 46.7
Migut.A00055 Erythranthe guttata HOM05D002238 ORTHO05D007272 1.7e-97 360.5 390 49.5
arahy.Tifrunner.gnm1.ann1.U1RD55 Arachis hypogaea HOM05D002238 ORTHO05D007272 3.8e-97 359.4 388 47.4
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 2.5e-96 356.7 360 48.3
C07p42320 Brassica napus HOM05D002238 ORTHO05D007272 4.2e-96 355.9 398 47.7
SGA_v2.0_scaffold20G09144 Striga asiatica HOM05D002238 ORTHO05D007272 5.5e-96 355.5 393 48.6
BolC7t44761H Brassica oleracea HOM05D002238 ORTHO05D007272 7.2e-96 355.1 398 47.7
CARHR187880 Cardamine hirsuta HOM05D002238 ORTHO05D007272 1.6e-95 354.0 383 48.8
CsaV3_3G046550 Cucumis sativus L. HOM05D002238 ORTHO05D007272 2.1e-95 353.6 382 49.2
AT5G25500 Arabidopsis thaliana HOM05D002238 ORTHO05D007272 6.1e-95 352.1 400 48.0
Aa31LG11G4600 Aethionema arabicum HOM05D002238 ORTHO05D007272 1.0e-94 351.3 403 46.9
arahy.Tifrunner.gnm1.ann1.V2KEMD Arachis hypogaea HOM05D002238 ORTHO05D007272 1.8e-94 350.5 388 47.9
HPP92_000893 Vanilla planifolia HOM05D002238 ORTHO05D007272 1.8e-94 350.5 393 44.3
AL6G37300 Arabidopsis lyrata HOM05D002238 ORTHO05D007272 5.2e-94 349.0 400 47.8
Phvul.003G021200 Phaseolus vulgaris HOM05D002238 ORTHO05D007272 5.2e-94 349.0 402 45.3
arahy.Tifrunner.gnm1.ann1.H3G4DQ Arachis hypogaea HOM05D002238 ORTHO05D007272 6.8e-94 348.6 380 48.2
THA.LOC104810431 Tarenaya hassleriana HOM05D002238 ORTHO05D007272 2.6e-93 346.7 379 47.8
Sp2g22030 Schrenkiella parvula HOM05D002238 ORTHO05D007272 3.4e-93 346.3 400 47.0
Thhalv10005310m.g Eutrema salsugineum HOM05D002238 ORTHO05D007272 4.4e-93 345.9 400 46.2
Carub.0006s2336 Capsella rubella HOM05D002238 ORTHO05D007272 5.7e-93 345.5 425 45.6
arahy.Tifrunner.gnm1.ann1.TBR9XZ Arachis hypogaea HOM05D002238 ORTHO05D007272 9.8e-93 344.7 381 47.0
Lsat_1_v5_gn_5_105001 Lactuca sativa HOM05D002238 ORTHO05D007272 1.7e-92 344.0 379 49.6
arahy.Tifrunner.gnm1.ann1.BAI8MS Arachis hypogaea HOM05D002238 ORTHO05D007272 4.9e-92 342.4 379 47.2
MELO3C003684.2 Cucumis melo HOM05D002238 ORTHO05D007272 1.1e-91 341.3 396 45.5
C02p59480 Brassica napus HOM05D002238 ORTHO05D007272 3.1e-91 339.7 375 48.0
arahy.Tifrunner.gnm1.ann1.NZP3ZD Arachis hypogaea HOM05D002238 ORTHO05D007272 4.1e-91 339.3 376 47.3
unitig_32.g11479 Utricularia gibba HOM05D002238 ORTHO05D007272 1.3e-89 334.3 383 44.6
BraA02t08935Z Brassica rapa HOM05D002238 ORTHO05D007272 1.7e-89 334.0 375 47.5
BolC2t12011H Brassica oleracea HOM05D002238 ORTHO05D007272 2.3e-89 333.6 375 47.2
Peaxi162Scf00108g00056 Petunia axillaris HOM05D002238 ORTHO05D007272 2.3e-89 333.6 404 45.8
A02p39700 Brassica napus HOM05D002238 ORTHO05D007272 6.6e-89 332.0 375 46.9
arahy.Tifrunner.gnm1.ann1.Z0G856 Arachis hypogaea HOM05D002238 ORTHO05D007272 3.6e-87 326.2 370 46.2
HanXRQChr13g0402681 Helianthus annuus HOM05D002238 ORTHO05D007272 6.1e-87 325.5 413 43.8
GSVIVG01035523001 Vitis vinifera HOM05D002238 ORTHO05D007272 1.9e-83 313.9 424 43.9
BraA06t26543Z Brassica rapa HOM05D002238 ORTHO05D007272 4.6e-82 309.3 302 51.3
Nitab4.5_0009119g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.1e-79 300.4 332 46.7
SHI18572 Sapria himalayana HOM05D002238 ORTHO05D007272 1.1e-78 298.1 400 42.5
QL01p053808 Quercus lobata HOM05D002238 ORTHO05D007272 1.2e-74 284.6 292 49.7
ATR1156G046 Amborella trichopoda HOM05D002238 ORTHO05D007272 1.7e-73 280.8 304 47.7
Aqoxy5G03332 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 6.2e-71 272.3 292 49.0
Nitab4.5_0017994g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.4e-67 260.4 301 46.2
Zm00001eb090760 Zea mays HOM05D002238 ORTHO05D007272 7.1e-67 258.8 316 44.6
ECA233G3411 Erigeron canadensis HOM05D002238 ORTHO05D007272 2.7e-66 256.9 227 54.6
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 1.3e-65 254.6 398 39.4
Duzib187G0736 Durio zibethinus HOM05D002238 ORTHO05D007272 2.5e-64 250.4 209 55.5
Atru.chr7.2387 Acer truncatum HOM05D002238 ORTHO05D007272 5.6e-64 249.2 174 69.5
Glyma.09G122801 Glycine max HOM05D002238 ORTHO05D007272 1.4e-62 244.6 194 59.3
Os11g0207300 Oryza sativa ssp. japonica HOM05D002238 ORTHO05D007272 2.4e-62 243.8 434 36.4
MD15G1119600 Malus domestica HOM05D002238 ORTHO05D007272 1.2e-61 241.5 249 49.0
SEGI_41370 Sequoiadendron giganteum HOM05D002238 ORTHO05D007272 6.2e-55 219.2 419 31.0
BcaNung07110 Brassica carinata HOM05D002238 ORTHO05D007272 4.4e-53 213.0 176 59.7
QL10p065634 Quercus lobata HOM05D002238 ORTHO05D007272 1.4e-51 208.0 257 40.9
Nitab4.5_0004440g0040 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.6e-50 204.5 174 59.2
MD15G1122300 Malus domestica HOM05D002238 ORTHO05D007272 5.1e-49 199.5 266 41.4
Peaxi162Scf00108g00048 Petunia axillaris HOM05D002238 ORTHO05D007272 8.7e-41 172.2 202 45.0
SalBow7G3196 Salvia bowleyana HOM05D002238 ORTHO05D007272 6.2e-39 166.0 154 54.5
Nitab4.5_0013543g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.8e-38 164.5 136 56.6
Atru.chr7.2264 Acer truncatum HOM05D002238 ORTHO05D007272 6.9e-38 162.5 197 44.7
SalBow6G2105 Salvia bowleyana HOM05D002238 ORTHO05D007272 2.0e-37 161.0 157 53.5
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 7.6e-37 159.1 225 42.2
BcaB07g29994 Brassica carinata HOM05D002238 ORTHO05D007272 2.2e-36 157.5 176 49.4
Nitab4.5_0011728g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.3e-33 148.3 328 30.5
MD15G1118500 Malus domestica HOM05D002238 ORTHO05D007272 4.0e-30 136.7 104 59.6
Nitab4.5_0012587g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.0e-28 132.1 282 31.2
A06p36210 Brassica napus HOM05D002238 ORTHO05D007272 4.9e-28 129.8 188 40.4
Nitab4.5_0011591g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.7e-26 124.0 111 53.2
QL10p065406 Quercus lobata HOM05D002238 ORTHO05D007272 1.8e-25 121.3 257 29.6
Nitab4.5_0002007g0110 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.0e-25 120.6 112 51.8
Nitab4.5_0002007g0090 Nicotiana tabacum HOM05D002238 ORTHO05D007272 8.5e-20 102.4 104 48.1
Nitab4.5_0011728g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.7e-18 97.4 117 44.4
Nitab4.5_0012587g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.8e-17 94.7 117 43.6
Atru.chr7.2385 Acer truncatum HOM05D002238 ORTHO05D026268 9.1e-14 82.4 91 46.2
Nitab4.5_0002007g0100 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.7e-10 70.1 88 39.8
Nitab4.5_0011591g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.8e-06 58.2 72 37.5


User provided reference genes

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