Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 3.7e-188 661.4 332 100.0
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 1.4e-182 642.9 332 97.3
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 4.3e-128 461.8 325 70.2
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 8.1e-127 457.6 323 70.0
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 1.1e-126 457.2 325 69.5
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 5.3e-126 454.9 325 69.8
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 2.6e-125 452.6 325 68.0
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 1.3e-124 450.3 326 68.1
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 1.3e-124 450.3 325 68.0
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 3.8e-124 448.7 326 67.8
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 1.9e-123 446.4 325 69.5
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 3.2e-123 445.7 321 68.8
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 9.3e-123 444.1 324 68.8
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.2e-122 443.7 328 68.0
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 3.5e-122 442.2 326 66.0
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 3.5e-122 442.2 326 66.0
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 4.6e-122 441.8 326 66.9
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.3e-121 440.3 326 65.6
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 2.3e-121 439.5 334 66.5
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 3.9e-121 438.7 324 67.6
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 3.9e-121 438.7 326 65.6
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 1.1e-120 437.2 323 67.2
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.5e-120 436.8 323 65.0
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 1.5e-120 436.8 325 66.2
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 3.3e-120 435.6 323 66.6
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 3.3e-120 435.6 326 66.9
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 7.4e-120 434.5 323 67.2
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 9.6e-120 434.1 323 64.7
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 9.6e-120 434.1 322 67.4
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 1.3e-119 433.7 326 65.6
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 1.6e-119 433.3 321 67.3
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 2.1e-119 433.0 320 66.2
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 2.1e-119 433.0 323 66.6
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 2.1e-119 433.0 318 66.0
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 2.8e-119 432.6 325 66.5
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 3.7e-119 432.2 323 65.9
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 3.7e-119 432.2 323 66.6
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 4.8e-119 431.8 323 64.4
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 4.8e-119 431.8 323 66.3
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 4.8e-119 431.8 329 65.3
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 6.2e-119 431.4 320 65.6
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 1.4e-118 430.3 321 66.0
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 3.1e-118 429.1 323 65.3
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 4.0e-118 428.7 323 65.6
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 5.3e-118 428.3 323 64.7
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 5.3e-118 428.3 326 64.4
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 6.9e-118 427.9 328 64.0
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 1.2e-117 427.2 323 64.1
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 1.5e-117 426.8 323 65.6
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 2.0e-117 426.4 328 64.0
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 3.4e-117 425.6 323 66.6
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 5.8e-117 424.9 323 64.7
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 7.6e-117 424.5 323 64.7
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.9e-116 422.5 328 64.3
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 3.8e-116 422.2 322 65.2
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 4.9e-116 421.8 322 64.6
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 4.9e-116 421.8 323 65.0
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 1.1e-115 420.6 325 64.6
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.9e-115 419.9 321 64.8
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 3.2e-115 419.1 324 63.9
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 3.2e-115 419.1 325 64.9
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 4.2e-115 418.7 325 64.9
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 7.1e-115 417.9 325 64.6
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 4.6e-114 415.2 326 63.8
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 1.0e-113 414.1 323 64.1
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.0e-113 414.1 329 63.2
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 1.0e-113 414.1 323 63.8
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 2.3e-113 412.9 309 65.4
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 2.3e-113 412.9 323 64.1
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 3.9e-113 412.1 326 62.0
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 3.9e-113 412.1 323 64.4
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 6.7e-113 411.4 325 64.6
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 1.5e-112 410.2 324 63.6
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 3.3e-112 409.1 326 62.3
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 2.2e-111 406.4 325 62.5
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 2.8e-111 406.0 328 63.1
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 3.7e-111 405.6 321 63.2
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 7.6e-109 397.9 326 59.5
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 7.6e-109 397.9 324 61.4
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 8.5e-108 394.4 370 56.2
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.1e-107 394.0 323 60.4
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 1.9e-107 393.3 326 62.0
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 1.2e-106 390.6 307 62.5
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.1e-106 389.8 323 59.4
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 3.0e-105 386.0 306 63.1
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 1.1e-104 384.0 319 60.8
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 1.5e-104 383.6 325 59.1
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 9.7e-104 380.9 278 68.7
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 2.2e-103 379.8 332 58.7
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 3.7e-103 379.0 325 58.2
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 1.8e-102 376.7 325 58.2
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 1.8e-102 376.7 319 58.9
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 4.1e-102 375.6 325 57.2
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 1.5e-101 373.6 325 57.2
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 3.4e-101 372.5 325 57.5
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 1.3e-100 370.5 324 56.8
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 1.7e-100 370.2 324 56.8
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 2.2e-100 369.8 325 58.2
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 2.9e-100 369.4 325 58.2
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 2.9e-100 369.4 325 58.2
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 1.1e-99 367.5 319 58.3
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 1.4e-99 367.1 265 68.7
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 2.5e-99 366.3 420 51.2
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 9.4e-99 364.4 326 57.7
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 2.1e-98 363.2 325 56.3
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 3.6e-98 362.5 294 62.9
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 3.6e-98 362.5 376 52.9
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 7.9e-98 361.3 289 63.3
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 4.4e-96 355.5 322 57.1
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 4.8e-95 352.1 323 57.3
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.6e-93 346.3 323 56.0
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 5.9e-93 345.1 254 67.7
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 6.1e-90 335.1 267 62.9
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 2.3e-89 333.2 288 59.0
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 4.4e-88 328.9 325 51.7
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 5.7e-88 328.6 282 56.0
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 9.7e-88 327.8 323 53.3
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 4.8e-87 325.5 544 37.7
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 1.0e-84 317.8 312 52.9
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 8.5e-84 314.7 325 53.5
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 2.3e-81 306.6 282 54.6
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 8.8e-81 304.7 310 48.7
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 2.6e-80 303.1 310 48.7
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 5.7e-80 302.0 684 32.5
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 2.7e-77 293.1 222 65.3
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 1.7e-76 290.4 261 57.5
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 2.5e-75 286.6 312 50.3
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.5e-72 277.3 210 66.7
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 1.7e-71 273.9 229 59.0
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 5.2e-65 252.3 222 57.2
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 1.6e-61 240.7 180 66.1
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 1.1e-54 218.0 303 38.6
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 1.1e-43 181.4 193 46.1
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 4.9e-31 139.4 97 71.1
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 1.0e-28 131.7 99 61.6
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 2.4e-25 120.6 329 27.7
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 6.9e-25 119.0 86 68.6
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.2e-24 118.2 94 57.4
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 1.2e-24 118.2 99 56.6
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 3.4e-24 116.7 94 57.4
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 4.4e-24 116.3 74 68.9
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 3.2e-22 110.2 118 53.4
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 9.0e-17 92.0 60 76.7
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 1.9e-14 84.3 80 52.5
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 1.2e-13 81.6 71 56.3
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 2.0e-08 64.3 71 50.7
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 2.0e-08 64.3 56 57.1
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 8.4e-07 58.9 51 58.8
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 8.4e-07 58.9 51 58.8
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 1.1e-06 58.5 51 58.8


User provided reference genes

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