Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 0.0e+00 1820.4 896 100.0
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 0.0e+00 1744.9 896 95.8
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 4.5e-265 918.3 740 61.1
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 3.4e-260 902.1 734 60.4
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 5.9e-257 891.3 743 58.8
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 8.3e-251 870.9 699 60.2
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 2.3e-248 862.8 720 59.0
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 5.0e-248 861.7 701 59.5
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 5.0e-248 861.7 720 58.8
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 2.8e-246 855.9 722 58.6
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 3.1e-245 852.4 724 57.5
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 6.8e-245 851.3 746 57.5
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 8.9e-245 850.9 743 56.8
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 1.5e-244 850.1 685 60.0
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 2.6e-244 849.4 681 62.7
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 9.8e-244 847.4 742 56.9
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 1.3e-243 847.0 727 56.7
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 1.7e-243 846.7 725 56.8
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 3.7e-243 845.5 738 57.0
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 4.9e-243 845.1 739 57.5
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 7.1e-242 841.3 771 55.0
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 1.2e-241 840.5 686 59.6
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 1.6e-241 840.1 729 57.6
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 2.1e-241 839.7 745 55.8
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 2.7e-241 839.3 719 58.1
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 2.7e-241 839.3 684 59.6
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 6.0e-241 838.2 744 56.6
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 7.8e-241 837.8 738 56.2
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 3.9e-240 835.5 702 59.0
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 3.9e-240 835.5 734 56.3
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 3.9e-240 835.5 740 56.9
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 2.5e-239 832.8 733 55.4
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 3.3e-239 832.4 744 55.6
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 7.3e-239 831.2 744 55.9
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.6e-238 830.1 762 55.1
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 1.4e-237 827.0 741 55.6
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 1.4e-237 827.0 707 56.3
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 2.3e-237 826.2 733 55.3
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 2.3e-237 826.2 746 55.1
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 3.1e-237 825.9 707 56.0
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 3.1e-237 825.9 740 55.9
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 5.2e-237 825.1 742 55.8
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.2e-236 823.9 701 59.2
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 3.4e-236 822.4 709 55.9
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 5.8e-236 821.6 743 56.7
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 7.6e-236 821.2 692 57.4
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 1.3e-235 820.5 750 55.7
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 1.7e-235 820.1 745 54.6
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 2.2e-235 819.7 739 54.4
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 4.9e-235 818.5 743 55.7
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 2.4e-234 816.2 689 58.9
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 5.4e-234 815.1 747 54.4
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.2e-233 813.9 700 57.1
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 2.7e-233 812.8 705 55.5
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 7.8e-233 811.2 700 57.6
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 1.7e-232 810.1 739 55.1
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.7e-232 810.1 689 58.3
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 2.3e-232 809.7 684 56.9
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 5.1e-232 808.5 694 57.3
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 1.2e-230 803.9 693 57.9
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 2.1e-230 803.1 714 55.3
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 4.0e-229 798.9 752 54.1
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 4.0e-229 798.9 624 61.9
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 7.6e-228 794.7 694 56.3
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 3.8e-227 792.3 683 56.2
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 1.4e-226 790.4 685 56.4
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 5.4e-226 788.5 762 53.5
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 1.3e-224 783.9 747 51.8
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 5.1e-224 781.9 779 52.2
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 3.3e-223 779.2 683 54.5
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 4.8e-222 775.4 692 56.4
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 3.1e-221 772.7 691 56.2
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 6.9e-221 771.5 685 55.2
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 1.2e-220 770.8 697 52.9
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 1.5e-220 770.4 742 53.9
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 1.5e-220 770.4 763 52.8
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 9.3e-218 761.1 696 52.9
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 9.3e-218 761.1 685 52.8
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 4.6e-217 758.8 698 52.1
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 6.0e-217 758.4 697 52.7
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.0e-216 757.7 699 52.6
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 1.3e-216 757.3 872 47.0
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 5.1e-216 755.4 691 53.1
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 5.1e-216 755.4 707 51.8
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 6.7e-216 755.0 692 55.2
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.1e-215 754.2 689 53.3
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 2.8e-214 749.6 748 51.1
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 2.8e-214 749.6 700 51.9
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 3.6e-214 749.2 700 51.7
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 3.6e-214 749.2 700 51.7
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 4.8e-214 748.8 698 52.1
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 4.8e-214 748.8 596 59.7
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 6.2e-214 748.4 748 50.3
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 8.1e-214 748.0 639 57.3
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.8e-213 746.9 718 51.7
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 1.2e-212 744.2 687 52.4
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 2.6e-212 743.0 748 50.1
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 7.6e-212 741.5 748 50.0
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.3e-211 740.7 688 53.1
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 1.7e-211 740.3 766 49.7
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 1.2e-209 734.2 690 53.2
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 7.9e-209 731.5 691 51.5
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 8.7e-208 728.0 695 52.1
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 2.5e-207 726.5 686 51.0
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 2.5e-207 726.5 742 50.9
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 4.3e-207 725.7 701 53.1
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 9.6e-207 724.5 698 52.6
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 4.8e-206 722.2 598 59.0
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.5e-204 717.2 762 50.4
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 7.6e-204 714.9 623 56.0
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 1.1e-202 711.1 715 51.7
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.9e-202 710.3 692 52.5
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 2.7e-201 706.4 789 48.2
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 3.0e-200 703.0 684 51.6
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 1.1e-199 701.0 630 54.8
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 3.3e-199 699.5 689 52.2
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 3.3e-199 699.5 729 48.8
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 2.6e-196 689.9 730 47.9
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 1.0e-195 688.0 701 51.6
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 3.4e-188 662.9 652 50.6
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 1.6e-185 654.1 540 60.2
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.8e-184 650.6 677 51.0
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 2.6e-180 636.7 687 49.5
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.4e-178 630.9 691 47.3
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.6e-177 627.5 689 47.6
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 9.7e-175 618.2 541 55.5
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.6e-172 610.9 739 43.8
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 6.3e-166 589.0 686 45.9
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 1.6e-164 584.3 735 43.8
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 1.6e-161 574.3 565 52.9
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 2.1e-161 573.9 736 43.9
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 8.6e-155 552.0 287 89.9
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 2.5e-154 550.4 550 51.3
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 1.6e-137 494.6 325 68.0
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 8.6e-131 472.2 424 51.2
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 3.4e-127 460.3 384 57.3
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 4.0e-104 383.6 214 79.9
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 4.6e-100 370.2 415 47.7
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 6.7e-99 366.3 570 37.0
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 1.5e-98 365.2 387 45.2
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 3.3e-98 364.0 476 43.3
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 2.1e-92 344.7 413 45.0
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 4.9e-86 323.6 579 33.9
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 7.1e-85 319.7 549 34.4
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 5.1e-83 313.5 312 45.5
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 6.5e-70 270.0 342 46.5
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 2.5e-61 241.5 156 69.9
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 2.1e-60 238.4 214 53.3
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 7.0e-56 223.4 139 71.2
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.3e-51 208.4 219 47.0
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 8.2e-49 199.9 233 45.5
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 3.4e-42 177.9 117 65.8
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 5.4e-40 170.6 120 60.8
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 3.8e-38 164.5 396 31.3
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 1.1e-37 162.9 99 71.7
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 1.1e-37 162.9 99 71.7
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 1.1e-37 162.9 99 71.7
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 1.9e-37 162.2 259 39.8
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 1.5e-34 152.5 158 48.1
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 2.0e-31 142.1 221 39.8
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 9.2e-24 116.7 181 38.1
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 1.5e-21 109.4 265 31.7
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 1.1e-19 103.2 269 29.0
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 8.9e-19 100.1 72 65.3
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 4.4e-18 97.8 59 72.9
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 6.0e-15 87.4 147 36.7
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 1.2e-12 79.7 54 68.5
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 4.7e-12 77.8 112 39.3
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 8.1e-12 77.0 158 32.3
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 1.1e-11 76.6 248 26.6
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 6.8e-11 73.9 43 69.8
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 6.8e-11 73.9 43 69.8
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.9e-09 68.6 212 28.3


User provided reference genes

Program Settings