Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G6683 Papaver somniferum HOM05D005036 ORTHO05D005881 1.1e-76 290.4 203 100.0
PSO063G2941 Papaver somniferum HOM05D005036 ORTHO05D005881 1.2e-59 233.8 184 95.1
Nn2g13858 Nelumbo nucifera HOM05D005036 ORTHO05D005881 9.9e-51 204.1 206 77.2
Aqoxy1G01100 Aquilegia oxysepala HOM05D005036 ORTHO05D005881 3.1e-44 182.6 207 64.3
Actinidia31315 Actinidia chinensis HOM05D005036 ORTHO05D005881 9.9e-43 177.6 204 68.1
Actinidia32478 Actinidia chinensis HOM05D005036 ORTHO05D005881 2.2e-42 176.4 204 66.2
Thecc.05G071400 Theobroma cacao HOM05D005036 ORTHO05D005881 2.4e-41 172.9 201 70.6
Ciclev10012800m.g Citrus clementina HOM05D005036 ORTHO05D005881 4.2e-41 172.2 204 69.6
AUR62026956 Chenopodium quinoa HOM05D005036 ORTHO05D005881 1.6e-40 170.2 202 69.8
AUR62041564 Chenopodium quinoa HOM05D005036 ORTHO05D005881 3.5e-40 169.1 202 69.3
RhsimUnG0004000 Rhododendron simsii HOM05D005036 ORTHO05D005881 3.5e-40 169.1 210 62.4
RhsimUnG0067400 Rhododendron simsii HOM05D005036 ORTHO05D005881 3.5e-40 169.1 210 62.4
TWI53G1582 Tripterygium wilfordii HOM05D005036 ORTHO05D005881 1.0e-39 167.5 201 70.1
Gohir.D01G201000 Gossypium hirsutum HOM05D005036 ORTHO05D005881 1.3e-39 167.2 201 68.2
Cfa017655 Carpinus fangiana HOM05D005036 ORTHO05D005881 1.8e-39 166.8 206 63.1
EL10Ac7g16693 Beta vulgaris HOM05D005036 ORTHO05D005881 2.3e-39 166.4 206 66.5
Cc06_g04530 Coffea canephora HOM05D005036 ORTHO05D005881 3.9e-39 165.6 204 69.1
TAR623G1598 Trochodendron aralioides HOM05D005036 ORTHO05D005881 3.9e-39 165.6 197 67.5
CAN.G488.30 Capsicum annuum HOM05D005036 ORTHO05D005881 6.7e-39 164.9 200 69.5
Haze_20497 Corylus avellana HOM05D005036 ORTHO05D005881 6.7e-39 164.9 206 61.7
GSVIVG01033679001 Vitis vinifera HOM05D005036 ORTHO05D005881 4.3e-38 162.2 203 68.0
Sc02g0001470 Simmondsia chinensis HOM05D005036 ORTHO05D005881 5.6e-38 161.8 204 56.4
Atru.chr8.1751 Acer truncatum HOM05D005036 ORTHO05D005881 7.4e-38 161.4 202 67.3
Duzib093G0365 Durio zibethinus HOM05D005036 ORTHO05D005881 9.6e-38 161.0 202 66.8
Gohir.A01G214100 Gossypium hirsutum HOM05D005036 ORTHO05D005881 1.6e-37 160.2 201 66.7
CANSAT80G0983 Cannabis sativa HOM05D005036 ORTHO05D005881 2.1e-37 159.8 201 66.2
FAN05G3428 Fragaria x ananassa HOM05D005036 ORTHO05D005881 3.7e-37 159.1 206 68.0
FAN09G0503 Fragaria x ananassa HOM05D005036 ORTHO05D000003 3.7e-37 159.1 206 68.0
FAN02G0694 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.8e-37 158.7 206 67.5
RcHm_v2.0_Chr3g0470841 Rosa chinensis HOM05D005036 ORTHO05D005881 8.1e-37 157.9 206 66.5
Sopen10g033320 Solanum pennellii HOM05D005036 ORTHO05D005881 8.1e-37 157.9 200 66.0
Peaxi162Scf00110g00120 Petunia axillaris HOM05D005036 ORTHO05D005881 1.1e-36 157.5 201 64.2
Nitab4.5_0000132g0510 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.4e-36 157.1 199 66.3
Cpa.g.sc92.91 Carica papaya HOM05D005036 ORTHO05D005881 1.8e-36 156.8 202 64.4
CiPaw.10G127400 Carya illinoinensis HOM05D005036 ORTHO05D005881 1.8e-36 156.8 205 65.9
FAN05G0966 Fragaria x ananassa HOM05D005036 ORTHO05D005881 2.4e-36 156.4 206 67.5
MD12G1106800 Malus domestica HOM05D005036 ORTHO05D005881 2.4e-36 156.4 205 65.9
HanXRQChr13g0400721 Helianthus annuus HOM05D005036 ORTHO05D005881 4.0e-36 155.6 200 68.0
PGSC0003DMG400028280 Solanum tuberosum HOM05D005036 ORTHO05D005881 4.0e-36 155.6 198 67.2
FvH4_6g16830 Fragaria vesca HOM05D005036 ORTHO05D005881 5.3e-36 155.2 204 67.2
FAN14G1811 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.3e-36 155.2 204 67.2
Glyma.10G059800 Glycine max HOM05D005036 ORTHO05D005881 5.3e-36 155.2 206 66.5
Manes.08G013000 Manihot esculenta HOM05D005036 ORTHO05D005881 5.3e-36 155.2 190 70.0
Duzib128G0734 Durio zibethinus HOM05D005036 ORTHO05D005881 6.9e-36 154.8 202 66.3
vmacro08795 Vaccinium macrocarpon HOM05D005036 ORTHO05D005881 1.2e-35 154.1 261 46.0
CDE06G0353 Ceratophyllum demersum HOM05D005036 ORTHO05D005881 1.5e-35 153.7 201 68.2
Glyma.13G146500 Glycine max HOM05D005036 ORTHO05D005881 1.5e-35 153.7 206 64.6
VMungo0720G2361 Vigna mungo HOM05D005036 ORTHO05D005881 1.5e-35 153.7 207 63.3
Peaxi162Scf01128g00018 Petunia axillaris HOM05D005036 ORTHO05D005881 2.0e-35 153.3 196 55.6
CSS0031942 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 2.6e-35 152.9 204 64.7
CSS0042807 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 2.6e-35 152.9 204 64.7
Lsat_1_v5_gn_6_28400 Lactuca sativa HOM05D005036 ORTHO05D005881 2.6e-35 152.9 199 67.3
ClCG10G019890 Citrullus lanatus HOM05D005036 ORTHO05D005881 5.8e-35 151.8 201 66.7
Phvul.007G151800 Phaseolus vulgaris HOM05D005036 ORTHO05D005881 5.8e-35 151.8 207 63.3
CsaV3_3G036210 Cucumis sativus L. HOM05D005036 ORTHO05D005881 7.6e-35 151.4 202 59.4
Ca_08897_v3 Cicer arietinum L. HOM05D005036 ORTHO05D005881 1.0e-34 151.0 204 64.2
arahy.Tifrunner.gnm1.ann1.HJT5F9 Arachis hypogaea HOM05D005036 ORTHO05D005881 1.7e-34 150.2 198 65.7
arahy.Tifrunner.gnm1.ann1.LB0AEW Arachis hypogaea HOM05D005036 ORTHO05D005881 1.7e-34 150.2 198 65.7
PGR004G0584 Punica granatum HOM05D005036 ORTHO05D005881 1.7e-34 150.2 208 63.0
MELO3C009379.2 Cucumis melo HOM05D005036 ORTHO05D005881 2.2e-34 149.8 202 59.9
Sed0017772 Sechium edule HOM05D005036 ORTHO05D005881 2.2e-34 149.8 203 64.0
Manes.09G062100 Manihot esculenta HOM05D005036 ORTHO05D005881 2.9e-34 149.4 192 66.1
Lj5g0011319 Lotus japonicus HOM05D005036 ORTHO05D005881 3.8e-34 149.1 201 63.2
Potri.016G097900 Populus trichocarpa HOM05D005036 ORTHO05D005881 3.8e-34 149.1 186 70.4
Hma1.2p1_0547F.1_g176530 Hydrangea macrophylla HOM05D005036 ORTHO05D005881 6.5e-34 148.3 205 63.9
Prupe.7G125700 Prunus persica HOM05D005036 ORTHO05D005881 6.5e-34 148.3 206 65.0
ECA233G6008 Erigeron canadensis HOM05D005036 ORTHO05D005881 8.4e-34 147.9 197 66.5
HPP92_008393 Vanilla planifolia HOM05D005036 ORTHO05D005881 1.1e-33 147.5 203 52.7
COL.COLO4_26911 Corchorus olitorius HOM05D005036 ORTHO05D005881 1.4e-33 147.1 220 60.9
Lalb_Chr02g0155461 Lupinus albus HOM05D005036 ORTHO05D005881 1.9e-33 146.7 195 64.1
Nitab4.5_0003314g0090 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.9e-33 146.7 202 63.4
Nitab4.5_0002373g0080 Nicotiana tabacum HOM05D005036 ORTHO05D005881 4.2e-33 145.6 198 65.2
QL07p042294 Quercus lobata HOM05D005036 ORTHO05D005881 5.5e-33 145.2 228 58.3
Dinv37336 Davidia involucrata HOM05D005036 ORTHO05D005881 7.1e-33 144.8 143 69.2
Potri.006G121500 Populus trichocarpa HOM05D005036 ORTHO05D005881 7.1e-33 144.8 188 70.2
Gorai.002G245700 Gossypium raimondii HOM05D005036 ORTHO05D005881 1.2e-32 144.1 103 69.9
AT3G09890 Arabidopsis thaliana HOM05D005036 ORTHO05D005881 1.6e-32 143.7 202 61.4
Medtr1g062770 Medicago truncatula HOM05D005036 ORTHO05D005881 2.1e-32 143.3 203 63.1
ATR0329G020 Amborella trichopoda HOM05D005036 ORTHO05D005881 2.7e-32 142.9 197 63.5
Hund20124 Selenicereus undatus HOM05D005036 ORTHO05D005881 4.6e-32 142.1 217 60.4
Sabra06G0095700 Salix brachista HOM05D005036 ORTHO05D005881 6.0e-32 141.7 188 68.1
Psat6g076000 Pisum sativum HOM05D005036 ORTHO05D005881 7.9e-32 141.4 203 62.1
Solyc09g008450.3 Solanum lycopersicum HOM05D005036 ORTHO05D005881 1.0e-31 141.0 197 61.9
Oeu016995.1 Olea europaea HOM05D005036 ORTHO05D005881 1.8e-31 140.2 201 62.2
Oeu056532.1 Olea europaea HOM05D005036 ORTHO05D005881 3.9e-31 139.0 185 65.4
Sopen09g003280 Solanum pennellii HOM05D005036 ORTHO05D005881 3.9e-31 139.0 197 63.5
CARHR084400 Cardamine hirsuta HOM05D005036 ORTHO05D005881 5.1e-31 138.7 204 57.4
TPR.G20997 Trifolium pratense HOM05D005036 ORTHO05D005881 6.7e-31 138.3 197 61.9
AL3G21130 Arabidopsis lyrata HOM05D005036 ORTHO05D005881 3.3e-30 136.0 206 56.8
SGA_v2.0_scaffold40G15474 Striga asiatica HOM05D005036 ORTHO05D005881 3.3e-30 136.0 191 63.9
PGSC0003DMG400003873 Solanum tuberosum HOM05D005036 ORTHO05D005881 5.7e-30 135.2 197 62.9
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 1.6e-29 133.7 199 40.2
unitig_578.g16379 Utricularia gibba HOM05D000468 ORTHO05D005881 1.6e-29 133.7 205 60.0
THA.LOC104823230 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 2.1e-29 133.3 200 62.0
SGA_v2.0_scaffold224G42932 Striga asiatica HOM05D005036 ORTHO05D005881 2.8e-29 132.9 204 53.9
BcaC01g04251 Brassica carinata HOM05D005036 ORTHO05D005881 3.7e-29 132.5 198 59.1
MSTRG.10334 Avicennia marina HOM05D005036 ORTHO05D005881 4.8e-29 132.1 198 53.0
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 1.1e-28 131.0 201 39.3
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 1.1e-28 131.0 201 39.3
Carub.0003s0899 Capsella rubella HOM05D005036 ORTHO05D005881 1.4e-28 130.6 202 59.9
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 1.8e-28 130.2 199 39.2
Migut.J00453 Erythranthe guttata HOM05D005036 ORTHO05D005881 1.8e-28 130.2 189 63.0
Nitab4.5_0003268g0010 Nicotiana tabacum HOM05D005036 ORTHO05D005881 2.4e-28 129.8 202 51.5
BcaB03g11582 Brassica carinata HOM05D005036 ORTHO05D005881 6.9e-28 128.3 197 57.4
Thhalv10021529m.g Eutrema salsugineum HOM05D005036 ORTHO05D005881 9.0e-28 127.9 201 54.7
Eucgr.A01621 Eucalyptus grandis HOM05D005036 ORTHO05D005881 1.2e-27 127.5 104 67.3
Migut.L01721 Erythranthe guttata HOM05D005036 ORTHO05D005881 3.4e-27 125.9 201 58.2
MBI13_g13833_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 4.5e-27 125.6 145 65.5
SEGI_13906 Sequoiadendron giganteum HOM05D005036 ORTHO05D005881 5.9e-27 125.2 204 59.3
Sp3g08240 Schrenkiella parvula HOM05D005036 ORTHO05D005881 7.6e-27 124.8 201 46.3
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 3.8e-26 122.5 189 37.6
Lj3A990G72 Lonicera japonica HOM05D005036 ORTHO05D005881 2.5e-25 119.8 146 76.0
Aa31LG3G2370 Aethionema arabicum HOM05D005036 ORTHO05D005881 6.1e-24 115.2 145 55.2
DCAR_017666 Daucus carota HOM05D005036 ORTHO05D005881 8.7e-23 111.3 199 56.8
Sc02g0001400 Simmondsia chinensis HOM05D005036 ORTHO05D005881 2.5e-22 109.8 201 45.8
BcaC05g29502 Brassica carinata HOM05D005036 ORTHO05D005881 1.1e-20 104.4 197 54.3
BcaC05g29503 Brassica carinata HOM05D005036 ORTHO05D005881 1.1e-20 104.4 197 54.3
C05p58170 Brassica napus HOM05D005036 ORTHO05D005881 1.1e-20 104.4 197 54.3
BolC5t34473H Brassica oleracea HOM05D005036 ORTHO05D005881 1.1e-20 104.4 197 54.3
DCAR_015009 Daucus carota HOM05D005036 ORTHO05D005881 3.4e-19 99.4 201 43.3
Zm00001eb003690 Zea mays HOM05D005036 ORTHO05D005881 7.7e-19 98.2 194 53.6
A05p39150 Brassica napus HOM05D005036 ORTHO05D005881 1.0e-18 97.8 197 53.8
BraA05t22704Z Brassica rapa HOM05D005036 ORTHO05D005881 1.0e-18 97.8 197 53.8
BcaC05g29714 Brassica carinata HOM05D005036 ORTHO05D005881 2.9e-18 96.3 200 38.0
BcaC05g29715 Brassica carinata HOM05D005036 ORTHO05D005881 2.9e-18 96.3 200 38.0
BcaC05g29716 Brassica carinata HOM05D005036 ORTHO05D005881 2.9e-18 96.3 200 31.5
BcaC05g29712 Brassica carinata HOM05D005036 ORTHO05D005881 5.0e-18 95.5 200 38.0
Os03g0145800 Oryza sativa ssp. japonica HOM05D005036 ORTHO05D005881 5.0e-18 95.5 138 50.0
BcaC05g29713 Brassica carinata HOM05D005036 ORTHO05D005881 8.5e-18 94.7 200 38.0
DCAR_032184 Daucus carota HOM05D005036 ORTHO05D005881 5.5e-17 92.0 187 42.8
Carub.0003s0923 Capsella rubella HOM05D005036 ORTHO05D005881 1.6e-16 90.5 141 66.7
MBI18_g12436_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.6e-16 90.5 143 67.8
AagrBONN_evm.TU.Sc2ySwM_368.2717 Anthoceros agrestis HOM05D005036 ORTHO05D005881 2.1e-16 90.1 106 47.2
MBI01_g04638_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 2.1e-16 90.1 141 69.5
MBI16_g11024_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 6.1e-16 88.6 85 78.8
THA.LOC104816666 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 6.1e-16 88.6 87 52.9
Pp3c10_11210 Physcomitrium patens HOM05D005036 ORTHO05D005881 1.1e-14 84.3 189 49.7
MBI15_g24508_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.1e-12 77.8 136 42.6
Psat4g020880 Pisum sativum HOM05D005036 ORTHO05D005881 1.5e-11 73.9 41 75.6
Ah.14g078370 Amaranthus hybridus HOM05D005036 ORTHO05D005881 7.7e-11 71.6 81 46.9
CBR_g9117 Chara braunii HOM05D005036 ORTHO05D005881 1.3e-10 70.9 98 40.8
Psat6g104720 Pisum sativum HOM05D001839 ORTHO05D001867 5.5e-09 65.5 168 28.6
MD04G1089000 Malus domestica HOM05D005036 ORTHO05D005881 4.7e-08 62.4 115 51.3
Solyc10g083870.2 Solanum lycopersicum HOM05D005036 ORTHO05D005881 2.3e-07 60.1 118 50.8
Cre06.g283300 Chlamydomonas reinhardtii HOM05D005036 ORTHO05D005881 5.1e-07 58.9 84 41.7
MCO14G431 Micromonas commoda HOM05D005036 ORTHO05D005881 8.8e-07 58.2 64 43.8
Lj3C990T8 Lonicera japonica HOM05D005036 ORTHO05D005881 5.7e-06 55.5 58 51.7


User provided reference genes

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