Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G6638 Papaver somniferum HOM05D004411 ORTHO05D005569 5.3e-102 374.4 193 100.0
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 2.2e-76 289.3 228 72.4
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 1.2e-74 283.5 227 71.8
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 7.2e-43 177.9 228 47.8
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 6.1e-42 174.9 173 56.6
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 4.0e-41 172.2 224 47.3
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 5.2e-41 171.8 176 55.7
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 1.2e-40 170.6 177 57.1
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 1.5e-40 170.2 207 48.3
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 4.4e-40 168.7 207 47.8
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 4.4e-40 168.7 175 54.9
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 2.8e-39 166.0 170 54.7
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 3.7e-39 165.6 166 54.8
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 7.0e-38 161.4 173 52.6
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 2.0e-37 159.8 173 49.1
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 2.0e-37 159.8 167 53.9
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 2.7e-37 159.5 167 51.5
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 4.5e-37 158.7 176 51.7
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 4.5e-37 158.7 208 44.7
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 8.6e-36 154.5 218 44.5
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 8.6e-36 154.5 210 47.1
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 1.1e-35 154.1 175 49.1
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 1.1e-35 154.1 214 43.9
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 1.5e-35 153.7 173 48.0
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 1.5e-35 153.7 172 49.4
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 1.5e-35 153.7 172 49.4
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 1.5e-35 153.7 196 47.4
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 1.9e-35 153.3 171 49.7
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 2.5e-35 152.9 172 50.6
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 4.2e-35 152.1 170 49.4
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 4.2e-35 152.1 171 50.3
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 4.2e-35 152.1 196 45.4
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 4.2e-35 152.1 172 48.8
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 5.5e-35 151.8 218 44.0
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 7.2e-35 151.4 171 45.6
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 9.5e-35 151.0 143 55.9
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 1.2e-34 150.6 170 48.8
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 1.6e-34 150.2 170 48.2
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 2.8e-34 149.4 115 73.0
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 2.8e-34 149.4 170 51.2
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 3.6e-34 149.1 179 46.9
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 4.7e-34 148.7 215 42.8
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 6.1e-34 148.3 171 51.5
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 8.0e-34 147.9 171 46.8
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 1.4e-33 147.1 171 46.8
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 1.8e-33 146.7 171 46.2
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 2.3e-33 146.4 170 48.2
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 3.0e-33 146.0 170 49.4
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 4.0e-33 145.6 172 48.8
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 4.0e-33 145.6 167 51.5
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 5.2e-33 145.2 189 46.0
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 5.2e-33 145.2 175 46.9
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 6.8e-33 144.8 170 47.6
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 8.9e-33 144.4 174 49.4
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 1.5e-32 143.7 171 44.4
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 2.0e-32 143.3 171 46.8
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 2.6e-32 142.9 171 47.4
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 2.6e-32 142.9 171 45.6
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 3.4e-32 142.5 215 41.4
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 5.7e-32 141.7 171 47.4
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 7.5e-32 141.4 186 45.2
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 1.3e-31 140.6 176 46.6
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 2.2e-31 139.8 166 48.8
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 2.2e-31 139.8 172 47.7
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 2.8e-31 139.4 170 45.9
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.1e-30 137.5 171 47.4
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 1.8e-30 136.7 183 46.4
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 2.4e-30 136.3 175 47.4
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 3.2e-30 136.0 173 46.2
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 1.2e-29 134.0 196 41.8
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 1.6e-29 133.7 219 38.4
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 3.5e-29 132.5 140 53.6
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 5.9e-29 131.7 140 54.3
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 5.9e-29 131.7 170 47.1
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 1.3e-28 130.6 182 42.9
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 3.9e-28 129.0 209 44.5
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 5.0e-28 128.6 166 46.4
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 6.6e-28 128.3 178 46.6
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 1.5e-27 127.1 214 37.9
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 1.5e-27 127.1 174 45.4
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 4.3e-27 125.6 170 44.1
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 4.3e-27 125.6 165 46.1
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 2.8e-26 122.9 172 43.6
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 3.6e-26 122.5 172 44.2
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 6.1e-26 121.7 171 43.9
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 8.0e-26 121.3 166 45.8
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 3.4e-24 115.9 149 41.6
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 2.2e-23 113.2 171 42.7
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 2.9e-23 112.8 172 41.9
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 3.7e-23 112.5 157 48.4
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 4.9e-23 112.1 219 37.4
COL.COLO4_09627 Corchorus olitorius HOM05D004411 ORTHO05D005569 8.3e-23 111.3 130 44.6
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 8.3e-23 111.3 172 40.7
Ah.06g195930 Amaranthus hybridus HOM05D004411 ORTHO05D005569 1.1e-22 110.9 134 48.5
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 2.4e-22 109.8 142 44.4
Sopen07g032450 Solanum pennellii HOM05D004411 ORTHO05D005569 1.6e-21 107.1 134 40.3
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 6.0e-21 105.1 150 42.0
ECA236G1239 Erigeron canadensis HOM05D004411 ORTHO05D005569 3.9e-20 102.4 136 47.8
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 5.0e-20 102.1 164 38.4
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 6.6e-20 101.7 158 39.2
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.5e-19 100.5 192 34.9
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 1.5e-19 100.5 152 35.5
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 1.5e-19 100.5 110 54.5
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 2.1e-18 96.7 169 42.0
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 3.6e-18 95.9 76 67.1
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 4.7e-18 95.5 172 39.0
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 4.7e-18 95.5 153 34.0
PGSC0003DMG401013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 6.2e-18 95.1 153 33.3
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 8.1e-18 94.7 196 35.7
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 8.1e-18 94.7 196 35.7
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 8.1e-18 94.7 196 35.7
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 1.8e-17 93.6 172 38.4
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 2.3e-17 93.2 185 32.4
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 3.1e-17 92.8 172 38.4
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 5.8e-16 88.6 168 36.9
Glyma.09G101400 Glycine max HOM05D004411 ORTHO05D005569 2.2e-15 86.7 118 40.7
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 2.9e-15 86.3 102 50.0
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 1.1e-14 84.3 202 30.2
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 1.4e-14 84.0 117 46.2
VMungo0540G0671 Vigna mungo HOM05D004411 ORTHO05D005569 2.4e-14 83.2 113 37.2
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 7.1e-14 81.6 77 59.7
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 4.6e-13 79.0 142 39.4
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 4.6e-13 79.0 142 39.4
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 6.0e-13 78.6 187 34.8
VMungo1383G3213 Vigna mungo HOM05D004411 ORTHO05D005569 7.8e-13 78.2 113 37.2
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 2.5e-11 73.2 111 32.4
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 1.6e-10 70.5 151 29.1
MD03G1208200 Malus domestica HOM05D004411 ORTHO05D005569 3.6e-10 69.3 153 29.4
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 1.5e-08 63.9 222 28.4
Pp3c25_11530 Physcomitrium patens HOM05D004411 ORTHO05D005569 1.7e-07 60.5 101 37.6
Haze_07158 Corylus avellana HOM05D004411 ORTHO05D005569 1.9e-06 57.0 64 40.6
EL10Ac9g22233 Beta vulgaris HOM05D004411 ORTHO05D005569 4.1e-06 55.8 117 30.8
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 7.1e-06 55.1 36 69.4


User provided reference genes

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