Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G6572 Papaver somniferum HOM05D005215 ORTHO05D006382 9.4e-121 436.8 211 100.0
PSO801G0072 Papaver somniferum HOM05D005215 ORTHO05D006382 2.8e-117 425.2 211 97.2
Dinv11822 Davidia involucrata HOM05D005215 ORTHO05D006382 4.1e-92 341.7 209 75.1
ClCG08G008310 Citrullus lanatus HOM05D005215 ORTHO05D006382 7.1e-92 340.9 211 75.8
TWI15G0816 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 9.2e-92 340.5 209 76.1
MD07G1058400 Malus domestica HOM05D005215 ORTHO05D006382 1.2e-91 340.1 208 75.5
arahy.Tifrunner.gnm1.ann1.E5H8ET Arachis hypogaea HOM05D005215 ORTHO05D006382 1.7e-90 336.3 209 73.2
PGR044G2198 Punica granatum HOM05D005215 ORTHO05D006382 1.7e-90 336.3 209 74.6
Cc02_g09580 Coffea canephora HOM05D005215 ORTHO05D006382 2.3e-90 335.9 207 74.4
Atru.chr12.1046 Acer truncatum HOM05D005215 ORTHO05D006382 3.0e-90 335.5 209 73.2
TWI63G0161 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 3.9e-90 335.1 210 74.8
MBI01_g04055_MAGBIO Magnolia biondii HOM05D005215 ORTHO05D006382 8.6e-90 334.0 209 73.7
PSO384G1677 Papaver somniferum HOM05D005215 ORTHO05D006382 1.9e-89 332.8 210 72.4
SalBow3G3150 Salvia bowleyana HOM05D005215 ORTHO05D006382 1.9e-89 332.8 209 72.7
Manes.18G138580 Manihot esculenta HOM05D005215 ORTHO05D006382 2.5e-89 332.4 207 74.4
TAR623G0377 Trochodendron aralioides HOM05D005215 ORTHO05D006382 2.5e-89 332.4 207 74.9
vmacro07260 Vaccinium macrocarpon HOM05D005215 ORTHO05D006382 2.5e-89 332.4 208 73.6
Hund06789 Selenicereus undatus HOM05D005215 ORTHO05D006382 3.3e-89 332.0 207 74.9
Thecc.10G114600 Theobroma cacao HOM05D005215 ORTHO05D006382 3.3e-89 332.0 209 74.2
Ciclev10016681m.g Citrus clementina HOM05D005215 ORTHO05D006382 4.3e-89 331.6 209 72.2
Nn6g34863 Nelumbo nucifera HOM05D005215 ORTHO05D006382 5.6e-89 331.3 207 74.9
PSO339G4522 Papaver somniferum HOM05D005215 ORTHO05D006382 5.6e-89 331.3 210 72.4
Aqoxy4G02757 Aquilegia oxysepala HOM05D005215 ORTHO05D006382 7.3e-89 330.9 209 72.7
Actinidia18624 Actinidia chinensis HOM05D005215 ORTHO05D006382 1.2e-88 330.1 199 76.4
Sed0008445 Sechium edule HOM05D005215 ORTHO05D006382 1.2e-88 330.1 207 73.9
SGA_v2.0_scaffold329G48861 Striga asiatica HOM05D005215 ORTHO05D006382 1.2e-88 330.1 209 72.7
CiPaw.14G033600 Carya illinoinensis HOM05D005215 ORTHO05D006382 1.6e-88 329.7 209 73.7
EL10Ac4g07754 Beta vulgaris HOM05D005215 ORTHO05D006382 2.8e-88 328.9 207 72.9
CSS0033765 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 3.6e-88 328.6 209 73.2
Lj5g0024589 Lotus japonicus HOM05D005215 ORTHO05D006382 3.6e-88 328.6 209 71.8
TPR.G2443 Trifolium pratense HOM05D005215 ORTHO05D006382 3.6e-88 328.6 209 71.8
Hma1.2p1_0756F.1_g213190 Hydrangea macrophylla HOM05D005215 ORTHO05D006382 4.7e-88 328.2 209 72.2
MD02G1262000 Malus domestica HOM05D005215 ORTHO05D006382 6.2e-88 327.8 210 70.5
RcHm_v2.0_Chr7g0197741 Rosa chinensis HOM05D005215 ORTHO05D006382 6.2e-88 327.8 204 74.0
Medtr1g111860 Medicago truncatula HOM05D005215 ORTHO05D006382 8.1e-88 327.4 207 72.9
TAR369G1081 Trochodendron aralioides HOM05D005215 ORTHO05D006382 1.1e-87 327.0 209 73.2
CiPaw.13G040900 Carya illinoinensis HOM05D005215 ORTHO05D006382 1.8e-87 326.2 209 72.2
QL04p046761 Quercus lobata HOM05D005215 ORTHO05D006382 1.8e-87 326.2 209 70.8
Actinidia34727 Actinidia chinensis HOM05D005215 ORTHO05D006382 2.3e-87 325.9 209 71.8
CAN.G1417.3 Capsicum annuum HOM05D005215 ORTHO05D006382 2.3e-87 325.9 207 72.0
ECA232G3141 Erigeron canadensis HOM05D005215 ORTHO05D006382 2.3e-87 325.9 207 70.5
Lsat_1_v5_gn_2_104201 Lactuca sativa HOM05D005215 ORTHO05D006382 2.3e-87 325.9 207 72.0
Potri.010G240000 Populus trichocarpa HOM05D005215 ORTHO05D006382 3.1e-87 325.5 207 72.0
AUR62042083 Chenopodium quinoa HOM05D005215 ORTHO05D006382 4.0e-87 325.1 207 71.5
Sed0014754 Sechium edule HOM05D005215 ORTHO05D006382 4.0e-87 325.1 207 72.9
CSS0044679 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 6.8e-87 324.3 199 74.9
Migut.F00868 Erythranthe guttata HOM05D005215 ORTHO05D006382 1.2e-86 323.6 209 71.8
Gorai.009G303500 Gossypium raimondii HOM05D005215 ORTHO05D006382 1.2e-86 323.6 209 72.7
Sc06g0002380 Simmondsia chinensis HOM05D005215 ORTHO05D006382 1.2e-86 323.6 209 69.9
Gohir.D05G288400 Gossypium hirsutum HOM05D005215 ORTHO05D006382 1.5e-86 323.2 209 72.7
arahy.Tifrunner.gnm1.ann1.KL5LPC Arachis hypogaea HOM05D005215 ORTHO05D006382 2.6e-86 322.4 232 65.5
ATR0776G030 Amborella trichopoda HOM05D005215 ORTHO05D006382 3.4e-86 322.0 209 71.8
MSTRG.27562 Avicennia marina HOM05D005215 ORTHO05D006382 3.4e-86 322.0 208 70.7
Psat0s1904g0160 Pisum sativum HOM05D005215 ORTHO05D006382 3.4e-86 322.0 209 71.3
BraA04t18418Z Brassica rapa HOM05D005215 ORTHO05D006382 4.4e-86 321.6 208 70.7
Migut.C00229 Erythranthe guttata HOM05D005215 ORTHO05D006382 4.4e-86 321.6 209 71.3
Eucgr.J00268 Eucalyptus grandis HOM05D005215 ORTHO05D006382 4.4e-86 321.6 207 72.9
Gohir.A05G287300 Gossypium hirsutum HOM05D005215 ORTHO05D006382 4.4e-86 321.6 209 72.7
Lsat_1_v5_gn_0_8140 Lactuca sativa HOM05D005215 ORTHO05D006382 4.4e-86 321.6 207 70.0
Nitab4.5_0009484g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 4.4e-86 321.6 207 70.5
THA.LOC104801304 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 4.4e-86 321.6 209 71.8
Duzib114G0243 Durio zibethinus HOM05D005215 ORTHO05D006382 5.8e-86 321.2 210 71.4
Thhalv10017213m.g Eutrema salsugineum HOM05D005215 ORTHO05D006382 5.8e-86 321.2 208 70.7
CDE06G1220 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 7.6e-86 320.9 207 69.6
BcaC02g07452 Brassica carinata HOM05D005215 ORTHO05D006382 9.9e-86 320.5 208 70.7
Prupe.2G069900 Prunus persica HOM05D005215 ORTHO05D006382 1.3e-85 320.1 209 70.3
FvH4_5g02370 Fragaria vesca HOM05D005215 ORTHO05D006382 2.9e-85 318.9 204 72.5
HanXRQChr07g0194041 Helianthus annuus HOM05D005215 ORTHO05D006382 2.9e-85 318.9 207 70.5
CARHR133400 Cardamine hirsuta HOM05D005215 ORTHO05D006382 3.7e-85 318.5 200 72.5
FAN13G0513 Fragaria x ananassa HOM05D005215 ORTHO05D006382 3.7e-85 318.5 204 72.1
Glyma.20G074500 Glycine max HOM05D005215 ORTHO05D006382 3.7e-85 318.5 203 73.4
Sabra08G0012600 Salix brachista HOM05D005215 ORTHO05D006382 4.9e-85 318.2 207 70.5
Solyc11g006770.3 Solanum lycopersicum HOM05D005215 ORTHO05D006382 4.9e-85 318.2 207 69.6
Sopen11g002700 Solanum pennellii HOM05D005215 ORTHO05D006382 4.9e-85 318.2 207 69.6
PGSC0003DMG400023967 Solanum tuberosum HOM05D005215 ORTHO05D006382 4.9e-85 318.2 207 69.6
Sp4g21070 Schrenkiella parvula HOM05D005215 ORTHO05D006382 6.4e-85 317.8 208 69.7
C04p66830 Brassica napus HOM05D005215 ORTHO05D006382 8.3e-85 317.4 208 69.2
FAN18G1091 Fragaria x ananassa HOM05D005215 ORTHO05D006382 8.3e-85 317.4 204 72.1
HanXRQChr11g0321671 Helianthus annuus HOM05D005215 ORTHO05D006382 8.3e-85 317.4 207 69.1
HPP92_020962 Vanilla planifolia HOM05D005215 ORTHO05D006382 8.3e-85 317.4 200 70.5
GSVIVG01010684001 Vitis vinifera HOM05D005215 ORTHO05D006382 8.3e-85 317.4 200 72.5
BolC4t28184H Brassica oleracea HOM05D005215 ORTHO05D006382 1.1e-84 317.0 208 69.2
Migut.B01734 Erythranthe guttata HOM05D005215 ORTHO05D006382 1.1e-84 317.0 209 69.9
Nitab4.5_0002586g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 1.1e-84 317.0 207 69.6
THA.LOC104811337 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 1.1e-84 317.0 209 69.9
FAN04G2904 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.4e-84 316.6 204 71.6
CANSAT56G3442 Cannabis sativa HOM05D005215 ORTHO05D006382 2.4e-84 315.8 209 70.3
Potri.008G019200 Populus trichocarpa HOM05D005215 ORTHO05D006382 2.4e-84 315.8 207 70.0
AL4G36010 Arabidopsis lyrata HOM05D005215 ORTHO05D006382 3.2e-84 315.5 207 70.0
Glyma.10G123100 Glycine max HOM05D005215 ORTHO05D006382 4.1e-84 315.1 203 72.9
DCAR_006336 Daucus carota HOM05D005215 ORTHO05D006382 5.4e-84 314.7 202 72.8
CDE08G0922 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 7.1e-84 314.3 207 67.6
Cpa.g.sc704.2 Carica papaya HOM05D005215 ORTHO05D006382 1.2e-83 313.5 194 75.3
Aa31LG5G21000 Aethionema arabicum HOM05D005215 ORTHO05D006382 2.7e-83 312.4 209 67.5
AT2G38710 Arabidopsis thaliana HOM05D005215 ORTHO05D006382 2.7e-83 312.4 200 71.0
Carub.0004s2071 Capsella rubella HOM05D005215 ORTHO05D006382 4.6e-83 311.6 208 68.3
C03p25540 Brassica napus HOM05D005215 ORTHO05D006382 1.3e-82 310.1 203 70.0
Peaxi162Scf00125g00233 Petunia axillaris HOM05D005215 ORTHO05D006382 1.7e-82 309.7 207 67.6
VMungo0720G2906 Vigna mungo HOM05D005215 ORTHO05D006382 2.3e-82 309.3 203 70.0
A03p21550 Brassica napus HOM05D005215 ORTHO05D006382 3.9e-82 308.5 203 69.5
Phvul.007G235600 Phaseolus vulgaris HOM05D005215 ORTHO05D006382 3.9e-82 308.5 203 70.0
BolC3t14941H Brassica oleracea HOM05D005215 ORTHO05D006382 5.1e-82 308.1 203 69.5
BraA03t11391Z Brassica rapa HOM05D005215 ORTHO05D006382 8.6e-82 307.4 203 69.0
Oeu030225.2 Olea europaea HOM05D005215 ORTHO05D006382 9.6e-81 303.9 218 66.1
Os10g0573100 Oryza sativa ssp. japonica HOM05D005215 ORTHO05D006382 3.1e-79 298.9 208 64.4
SEGI_01358 Sequoiadendron giganteum HOM05D005215 ORTHO05D006382 5.2e-79 298.1 203 67.5
AUR62041518 Chenopodium quinoa HOM05D005215 ORTHO05D006382 6.8e-79 297.7 227 62.1
SMO331G0011 Selaginella moellendorffii HOM05D005215 ORTHO05D006382 1.2e-78 297.0 203 66.0
Zm00001eb390460 Zea mays HOM05D005215 ORTHO05D006382 2.0e-78 296.2 208 65.9
Mapoly0059s0056 Marchantia polymorpha HOM05D005215 ORTHO05D006382 3.4e-78 295.4 203 66.5
Ah.11g047220 Amaranthus hybridus HOM05D005215 ORTHO05D006382 5.8e-78 294.7 207 66.2
Haze_03299 Corylus avellana HOM05D005215 ORTHO05D006382 7.6e-78 294.3 249 60.2
Pp3c3_21710 Physcomitrium patens HOM05D005215 ORTHO05D006382 6.4e-77 291.2 203 65.0
Oeu026607.3 Olea europaea HOM05D005215 ORTHO05D006382 2.7e-75 285.8 295 50.2
FAN08G2650 Fragaria x ananassa HOM05D005215 ORTHO05D006382 3.5e-75 285.4 205 65.9
AagrBONN_evm.TU.Sc2ySwM_117.3510 Anthoceros agrestis HOM05D005215 ORTHO05D006382 4.6e-75 285.0 200 65.0
MELO3C019899.2 Cucumis melo HOM05D005215 ORTHO05D006382 1.9e-73 279.6 175 74.3
Lj3A925G70 Lonicera japonica HOM05D005215 ORTHO05D006382 2.8e-72 275.8 173 73.4
Dinv10934 Davidia involucrata HOM05D005215 ORTHO05D006382 3.6e-72 275.4 167 76.0
Lalb_Chr06g0166341 Lupinus albus HOM05D005215 ORTHO05D006382 1.5e-62 243.4 146 76.0
Lalb_Chr02g0146211 Lupinus albus HOM05D005215 ORTHO05D006382 9.9e-62 240.7 146 76.0
A04p29510 Brassica napus HOM05D005215 ORTHO05D006382 3.2e-60 235.7 146 73.3
COL.COLO4_05151 Corchorus olitorius HOM05D005215 ORTHO05D006382 2.7e-59 232.6 425 36.9
Nn2g14190 Nelumbo nucifera HOM05D005215 ORTHO05D006382 6.0e-59 231.5 204 58.3
Pp3c4_19060 Physcomitrium patens HOM05D005215 ORTHO05D006382 3.9e-58 228.8 172 64.0
CBR_g39962 Chara braunii HOM05D005215 ORTHO05D006382 9.6e-49 197.6 138 64.5
CsaV3_6G004280 Cucumis sativus L. HOM05D005215 ORTHO05D006382 9.6e-49 197.6 114 78.9
Haze_26289 Corylus avellana HOM05D005215 ORTHO05D006382 4.8e-48 195.3 200 48.0
Cre03.g146687 Chlamydomonas reinhardtii HOM05D005215 ORTHO05D006382 1.1e-47 194.1 196 49.0
Ca_25655_v3 Cicer arietinum L. HOM05D000113 ORTHO05D001798 3.0e-42 176.0 126 66.7
MCO01G395 Micromonas commoda HOM05D005215 ORTHO05D006382 6.3e-40 168.3 195 44.1
Potri.008G019325 Populus trichocarpa HOM05D005215 ORTHO05D006382 1.2e-38 164.1 136 64.0
PRCOL_00005793 Prasinoderma coloniale HOM05D005215 ORTHO05D006382 7.2e-36 154.8 199 45.7
unitig_88.g27810 Utricularia gibba HOM05D005215 ORTHO05D006382 1.5e-33 147.1 89 74.2
Sc06g0000010 Simmondsia chinensis HOM05D005215 ORTHO05D006382 1.5e-30 137.1 96 62.5
Dinv02216 Davidia involucrata HOM05D005215 ORTHO05D006382 1.9e-28 130.2 75 78.7
Cfa010328 Carpinus fangiana HOM05D005215 ORTHO05D006382 2.6e-25 119.8 89 65.2
BcaNung04832 Brassica carinata HOM05D005215 ORTHO05D006382 9.7e-25 117.9 93 57.0
unitig_88.g27811 Utricularia gibba HOM05D005215 ORTHO05D006382 3.0e-18 96.3 62 67.7
Lalb_Chr06g0166351 Lupinus albus HOM05D005215 ORTHO05D006382 2.0e-17 93.6 72 58.3
Lalb_Chr02g0146221 Lupinus albus HOM05D005215 ORTHO05D006382 2.2e-16 90.1 63 61.9
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 4.8e-16 89.0 59 67.8
Sabra16G0322800 Salix brachista HOM05D005215 ORTHO05D006382 1.2e-14 84.3 59 66.1
Peaxi162Scf00959g00416 Petunia axillaris HOM05D005215 ORTHO05D006382 4.4e-09 65.9 40 77.5
Peaxi162Scf00959g00417 Petunia axillaris HOM05D005215 ORTHO05D306904 6.3e-08 62.0 58 56.9


User provided reference genes

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